SNP Profiles of "EET 45 [ECU]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-03-017-2-06
CGGTAAAGCCTTACCTCCGTCTATGGCC
2. _GC-03-017-2-06
CGGTATAGCCTTCCCTACGT___ATGGAC
3. _GC-03-017-2-06
CGGTATGGCCTTCCCTCCGTCTATGGAC
4. _GC-04-057-4-08
CGGTAAAGCCTTACCTCCGTCTATGGCC
5. _GC-04-057-4-08
CGGTAAAGCCTTACCTCCGTCTATGGCC
6. _GC-04-057-4-08
CGGTAAAGCCTTACCTCCGT___ATGGCC
7. _GC-04-057-4-08
CGGTAAAGCCTTACCTCCGTCTATGGCC
8. _GC-04-057-4-08
CGGTAAAGCCTTACCTCCGTCTATGGCC
9. _GC-04-058-4-09
GGGGATAGCTCTACCTACGGCTATAGAC
10. _GC-04-058-4-09
CGGTAAAGCCTTACCTCCGTCTATGGCC
11. _GC-04-058-4-09
CGGTAAAGCCTTACCTCCGTCTATGGCC
12. _3206_1_>_FP
CG___AA_______________CCGTCT______CC
13. _4408_1
CG___AA_______________CCGTCT______CC
14. _4408_2
CG___AA_______________CCGTCT______CC
15. _4408_5
CG___AA_______________CCGT_________CC
16. _4408_7
CG___AA_______________CCGTCT______CC
17. _4408_8
CG___AA_______________CCGTCT______CC
18. _4409_6
CG___AA_______________CCGTCT______CC
19. _4409_8
CG___AA_______________CCGTCT______CC
20. _3206_3_>_FP
CG___AT_______________CCGTCT______AC
21. _3206_2_>_FP
CG___AT_______________ACGT_________AC
22. _4409_1
GG___AT_______________ACGGCT______AC
23. _La_Montaña_Lot_6_Row_33_34_36
CG___AA_______________CCGTCT______CC
24. _Cabiria
CG___AA_______________CCGT_________CC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-03-017-2-06
CCAGAGCCATAGGGAACCAAAAAACGGG
2. _GC-03-017-2-06
CCAAGGCCATAGGGAACCAGAGATCGAG
3. _GC-03-017-2-06
CCAAGGCCATAGGGAACTAGAGATCGAG
4. _GC-04-057-4-08
CCAGAGCCATAGGGAACCAAAAAACGGG
5. _GC-04-057-4-08
CCAGAGCCATAGGGAACCAAAAAACGGG
6. _GC-04-057-4-08
CCAG___CCATAGGGAACCAAAAAACGGG
7. _GC-04-057-4-08
CCAGAGCCATAGGGAACCAAAAAACGGG
8. _GC-04-057-4-08
CCAGAGCCATAGGGAACCAAAAAACGGG
9. _GC-04-058-4-09
CGGGGGCTATAGAGATCTAGGGATCGAG
10. _GC-04-058-4-09
CCAGAGCCATAGGGAACCAAAAAACGGG
11. _GC-04-058-4-09
CCAGAGCCATAGGGAACCAAAAAACGGG
12. _3206_1_>_FP
CCAG___CC_________AA______AA______GG
13. _4408_1
CCAG___CC_________AA______AA______GG
14. _4408_2
CCAG___CC_________AA______AA______GG
15. _4408_5
CCAG___CC_________AA______AA______GG
16. _4408_7
CCAG___CC_________AA______AA______GG
17. _4408_8
CCAG___CC_________AA______AA______GG
18. _4409_6
CCAG___CC_________AA______AA______GG
19. _4409_8
CCAG___CC_________AA______AA______GG
20. _3206_3_>_FP
CCAA___CC_________AA______AG______AG
21. _3206_2_>_FP
CCAA___CC_________AA______AG______AG
22. _4409_1
CGGG___CT_________AT______GG______AG
23. _La_Montaña_Lot_6_Row_33_34_36
CCAG___CC_________AA_______________GG
24. _Cabiria
___AG___CC_________AA_______________GG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-03-017-2-06
ACAACTAAGGGGCGCCCTAGTTAAAGAA
2. _GC-03-017-2-06
ACACCTAGGTAGGGACCTAGTTAGAAAA
3. _GC-03-017-2-06
ACACCTAGGTAGCGACCTAGTTAGAAAA
4. _GC-04-057-4-08
ACAACTAAGGGGCGCCCTAGTTAAAGAA
5. _GC-04-057-4-08
ACAACTAAGGGGCGCCCTAGTTAAAGAA
6. _GC-04-057-4-08
ACAACTAAGGGGCGCCCTAGTTAAAGAA
7. _GC-04-057-4-08
ACAACTAAGGGGCGCCCTAGTTAAAGAA
8. _GC-04-057-4-08
ACAACTAAGGGGCGCCCTAGTTAAAGAA
9. _GC-04-058-4-09
CCCCCTGGGTAACGACCCAGCTGGAGGG
10. _GC-04-058-4-09
ACAACTAAGGGGCGCCCTAGTTAAAGAA
11. _GC-04-058-4-09
ACAACTAAGGGGCGCCCTAGTTAAAGAA
12. _3206_1_>_FP
___AACT___GG___CGCC______TTAA______
13. _4408_1
___AACT___GG___CGCC______TTAA______
14. _4408_2
___AACT___GG___CGCC______TTAA______
15. _4408_5
___AACT___GG___CGCC______TTAA______
16. _4408_7
___AACT___GG___CGCC______TTAA______
17. _4408_8
___AACT___GG___CGCC______TTAA______
18. _4409_6
___AACT___GG___CGCC______TTAA______
19. _4409_8
___AACT___GG___CGCC______TTAA______
20. _3206_3_>_FP
___ACCT___GT___CGAC______TTAG______
21. _3206_2_>_FP
___ACCT___GT___GGAC______TTAG______
22. _4409_1
___CCCT___GT___CGAC______CTGG______
23. _La_Montaña_Lot_6_Row_33_34_36
___AACT___GG___CGAA______TTAG______
24. _Cabiria
___AACT___GG___CGCC______TTAG______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-03-017-2-06
CCCTGTAATTGTGTCCCCAACGCGCTCC
2. _GC-03-017-2-06
TTCTGGAGTTGTTTACCGAACGCGCTCG
3. _GC-03-017-2-06
TTCTGGAGTTGTTTACCGAACGCCCTCG
4. _GC-04-057-4-08
CCCTGTAATTGTGTCCCCAACGCGCTCC
5. _GC-04-057-4-08
CCCTGTAATTGTGTCCCCAACGCGCTCC
6. _GC-04-057-4-08
CCCTGTAATTGTGTCCCCAACGCGCTCC
7. _GC-04-057-4-08
CCCTGTAATTGTGTCCCCAACGCGCTCC
8. _GC-04-057-4-08
CCCTGTAATTGTGTCCCCAACGCGCTCC
9. _GC-04-058-4-09
CTCTTTAGGTGGGTACGGAACGCGCCCC
10. _GC-04-058-4-09
CCCTGTAATTGTGTCCCCAACGCGCTCC
11. _GC-04-058-4-09
CCCTGTAATTGTGTCCCCAACGCGCTCC
12. _3206_1_>_FP
______GT_____________________CG___CT___
13. _4408_1
______GT_____________________CG___CT___
14. _4408_2
______GT_____________________CG___CT___
15. _4408_5
______GT_____________________CG___CT___
16. _4408_7
______GT_____________________CG___CT___
17. _4408_8
______GT_____________________CG___CT___
18. _4409_6
______GT_____________________CG___CT___
19. _4409_8
______GT_____________________CG___CT___
20. _3206_3_>_FP
______GG_____________________CG___CT___
21. _3206_2_>_FP
______GG_____________________CG___CT___
22. _4409_1
______TT_____________________CG___CC___
23. _La_Montaña_Lot_6_Row_33_34_36
______GT_____________________CG___CT___
24. _Cabiria
______GT_____________________CG___CT___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-03-017-2-06
AGCTCGCTTTCTAACCCTCGCCAGGGAA
2. _GC-03-017-2-06
AGCTCGCCATCTAGCTTTCCCTAGGGAT
3. _GC-03-017-2-06
AGCTCGCCATCTAGCTTTCGCCAGGGAA
4. _GC-04-057-4-08
AGCTCGCTTTCTAACCCTCGCCAGGGAA
5. _GC-04-057-4-08
AGCTCGCTTTCTAACCCTCGCCAGGGAA
6. _GC-04-057-4-08
AGCTCGCTTTCTAACCCTCGCCAGGGAA
7. _GC-04-057-4-08
AGCTCGCTTTCTAACCCTCGCCAGGGAA
8. _GC-04-057-4-08
AGCTCGCTTTCTAACCCTCGCCAGGGAA
9. _GC-04-058-4-09
AGTTGGTTAACTAACCCTCCCTAATTAA
10. _GC-04-058-4-09
AGCTCGCTTTCTAACCCTCGCCAGGGAA
11. _GC-04-058-4-09
AGCTCGCTTTCTAACCCTCGCCAGGGAA
12. _3206_1_>_FP
___CTCG___TTCTAA_________CCAG___AA
13. _4408_1
___CTCG___TTCTAA_________CCAG___AA
14. _4408_2
___CTCG___TTCTAA_________CCAG___AA
15. _4408_5
___CTCG___TTCTAA_________CCAG___AA
16. _4408_7
___CTCG___TTCTAA_________CCAG___AA
17. _4408_8
___CTCG___TTCTAA_________CCAG___AA
18. _4409_6
___CTCG___TTCTAA_________CCAG___AA
19. _4409_8
___CTCG___TTCTAA_________CCAG___AA
20. _3206_3_>_FP
___CTCG___ATCTAG_________CCAG___AA
21. _3206_2_>_FP
___CTCG___ATCTAG_________CTAG___AT
22. _4409_1
___TTGG___AACTAA_________CTAA___AA
23. _La_Montaña_Lot_6_Row_33_34_36
___CTCG___TTCTAA_________CCAG___AA
24. _Cabiria
___CTCG___TTCTAA_________CCAG___AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-03-017-2-06
CTAGTTCTCTCTTTTTAAGGCT___ACAG
2. _GC-03-017-2-06
CTAGTTCTCTCTCTGTACGTCTTTACAG
3. _GC-03-017-2-06
CTAGTTCTCTCTCTGTACGTCTTTCCAG
4. _GC-04-057-4-08
CTAGTTCTCTCTTTTTAAGGCT___ACAG
5. _GC-04-057-4-08
CTAGTTCTCTCTTTTTAAGGCT___ACAG
6. _GC-04-057-4-08
CTAGTTCTCTCTTTTTAAGGCT___ACAG
7. _GC-04-057-4-08
CTAGTTCTCTCTTTTTAAGGCT___ACAG
8. _GC-04-057-4-08
CTAGTTCTCTCTTTTTAAGGCT___ACAG
9. _GC-04-058-4-09
CCGGAACTTTTTTTGTCCGGCCTTAAGG
10. _GC-04-058-4-09
CTAGTTCTCTCTTTTTAAGGCT___ACAG
11. _GC-04-058-4-09
CTAGTTCTCTCTTTTTAAGGCT___ACAG
12. _3206_1_>_FP
_________CT______TT______GGCT___AC___
13. _4408_1
_________CT______TT______GGCT___AC___
14. _4408_2
_________CT______TT______GGCT___AC___
15. _4408_5
_________CT______TT______GGCT___AC___
16. _4408_7
_________CT______TT______GGCT___AC___
17. _4408_8
_________CT______TT______GGCT___AC___
18. _4409_6
_________CT______TT______GGCT___AC___
19. _4409_8
_________CT______TT______GGCT___AC___
20. _3206_3_>_FP
_________CT______CT______GTCT___CC___
21. _3206_2_>_FP
_________CT______CT______GTCT___AC___
22. _4409_1
_________CT______TT______GGCC___AA___
23. _La_Montaña_Lot_6_Row_33_34_36
__________________TT______GGCT___CC___
24. _Cabiria
__________________TT______GGCT___CC___
 85 86 87 88 89 90 91 92 93 94 95    
1. _GC-03-017-2-06
CTCCCCCGAACCACAACCGGACX_XX_XX_X
2. _GC-03-017-2-06
CTCTCTCGAGCTCCAACCAGACX_XX_XX_X
3. _GC-03-017-2-06
CTCTCCCGAGCTCCAACCAGACX_XX_XX_X
4. _GC-04-057-4-08
CTCCCCCGAACCACAACCGGACX_XX_XX_X
5. _GC-04-057-4-08
CTCCCCCGAACCACAACCGGACX_XX_XX_X
6. _GC-04-057-4-08
CTCCCCCGAACCACAACCGGACX_XX_XX_X
7. _GC-04-057-4-08
CTCCCCCGAACCACAACCGGACX_XX_XX_X
8. _GC-04-057-4-08
CTCCCCCGAA___ACAACC___ACX_XX_XX_X
9. _GC-04-058-4-09
TTCTCTCGAGCTACGGCCAGAAX_XX_XX_X
10. _GC-04-058-4-09
CTCCCCCGAACCACAACCGGACX_XX_XX_X
11. _GC-04-058-4-09
CTCCCCCGAACCACAACCGGACX_XX_XX_X
12. _3206_1_>_FP
CT___CCCGAACC_______________X_XX_XX_X
13. _4408_1
CT___CCCGAACC_______________X_XX_XX_X
14. _4408_2
CT___CCCGAACC_______________X_XX_XX_X
15. _4408_5
CT___CCCGAACC_______________X_XX_XX_X
16. _4408_7
CT___CCCGAACC_______________X_XX_XX_X
17. _4408_8
CT___CCCGAA__________________X_XX_XX_X
18. _4409_6
CT___CCCGAACC_______________X_XX_XX_X
19. _4409_8
CT___CCCGAACC_______________X_XX_XX_X
20. _3206_3_>_FP
CT___CCCGAGCT_______________X_XX_XX_X
21. _3206_2_>_FP
CT___CTCGAGCT_______________X_XX_XX_X
22. _4409_1
TT___CTCGAGCT_______________X_XX_XX_X
23. _La_Montaña_Lot_6_Row_33_34_36
CT___CTCGAACC_______________X_XX_XX_X
24. _Cabiria
CT___CTCGAACC_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._EET_45_[ECU] GC-03-017-2-06
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._EET_45_[ECU] GC-03-017-2-06
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018
3._EET_45_[ECU] GC-03-017-2-06
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018
4._EET_45_[ECU] GC-04-057-4-08
Location: Tree: 1
Notes: 1
 Mars, 2018
5._EET_45_[ECU] GC-04-057-4-08
Location: Tree: 2
Notes: 2
 Mars, 2018
6._EET_45_[ECU] GC-04-057-4-08
Location: Tree: 5
Notes: 5
 Mars, 2018
7._EET_45_[ECU] GC-04-057-4-08
Location: Tree: 7
Notes: 7
 Mars, 2018
8._EET_45_[ECU] GC-04-057-4-08
Location: Tree: 8
Notes: 8
 Mars, 2018
9._EET_45_[ECU] GC-04-058-4-09
Location: Tree: 1
Notes: 1
 Mars, 2018
10._EET_45_[ECU] GC-04-058-4-09
Location: Tree: 6
Notes: 6
 Mars, 2018
11._EET_45_[ECU] GC-04-058-4-09
Location: Tree: 8
Notes: 8
 Mars, 2018
12._EET_45_[ECU]
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
13._EET_45_[ECU]
Location: 4408 1
 Dapeng Zhang, 2016
14._EET_45_[ECU]
Location: 4408 2
 Dapeng Zhang, 2016
15._EET_45_[ECU]
Location: 4408 5
 Dapeng Zhang, 2016
16._EET_45_[ECU]
Location: 4408 7
 Dapeng Zhang, 2016
17._EET_45_[ECU]
Location: 4408 8
 Dapeng Zhang, 2016
18._EET_45_[ECU]
Location: 4409 6
 Dapeng Zhang, 2016
19._EET_45_[ECU]
Location: 4409 8
 Dapeng Zhang, 2016
20._EET_45_[ECU]
Location: 3206 3 > FP
 Dapeng Zhang, 2016
21._EET_45_[ECU]
Location: 3206 2 > FP
 Dapeng Zhang, 2016
22._EET_45_[ECU]
Location: 4409 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

23._EET_45_[ECU]
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016
24._EET_45_[ECU]
Location: Cabiria
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133