SNP Profiles of EET-45   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCAGAACTCTCCTTAATTCTCT
1._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
2._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
3._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
4._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
5._GC-03-017-2-06
AAACCTCCAGAACTCTCCTTAATTCTCT
6._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
7._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
8._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
9._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
10._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
11._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
12._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
13._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
14._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
15._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
16._EET_45_[ECU]
AACCCTCC____CCTT__CT_
17._EET_45_[ECU]
AACCCTAA____CCTT__CT_
18._EET_45_[ECU]
AACCCTAC____CCCTAG_CT_
19._GC-03-017-2-06
AACCCTACGGAGCTCTCCCTAGTTCTCT
20._GC-03-017-2-06
ATACCTACAGAGCTCTCTCTAGTTCTCT
21._EET_45_[ECU]
ATACCTAC____CTCTAG_CT_
22._GC-04-058-4-09
AAAACTACAGAGCTCCCTTTGGCTCCCT
23._EET_45_[ECU]
AAAACTAC____CTTTGG_CC_
 1516171819202122232425262728
_Input profile
ATACAAAGCCCGCGCCAGCTGGAAAACG
1._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
2._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
3._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
4._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
5._GC-03-017-2-06
ATACAAAGCCCGCGCCAGCTGGAAAACG
6._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
7._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
8._EET_45_[ECU]
___AG__CG____AAAA_
9._EET_45_[ECU]
___AG__CG____AAAA_
10._EET_45_[ECU]
___AG__CG____AAAA_
11._EET_45_[ECU]
___AG__CG____AAAA_
12._EET_45_[ECU]
___AG__CG____AAAA_
13._EET_45_[ECU]
___AG__CG____AAAA_
14._EET_45_[ECU]
___AG__CG____AAAA_
15._EET_45_[ECU]
___AG__CG____AAAA_
16._EET_45_[ECU]
___AG__CG____AAAA_
17._EET_45_[ECU]
___AG__CG____AAAA_
18._EET_45_[ECU]
___AG__CG____ATAA_
19._GC-03-017-2-06
ATACAAAGCGCCCGCTAACTGGATAACG
20._GC-03-017-2-06
ATACAAAGCGCGCGCCAACTGGATAACG
21._EET_45_[ECU]
___AG__CG____ATAA_
22._GC-04-058-4-09
ATCCAAAAGGCGGGCTAGTTAGATATCG
23._EET_45_[ECU]
___AA__GG____ATAT_
 2930313233343536373839404142
_Input profile
CGTTCTTTAGCGACAAGTGTTTAACTGG
1._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
2._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
3._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
4._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
5._GC-03-017-2-06
CGTTCTTTAGCGACAAGTGTTTAACTGG
6._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
7._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
8._EET_45_[ECU]
CGTT___CG_AAGT__AA__
9._EET_45_[ECU]
CGTT___CG_AAGT__AA__
10._EET_45_[ECU]
CGTT___CG_AAGT__AA__
11._EET_45_[ECU]
CGTT___CG_AAGT__AA__
12._EET_45_[ECU]
CGTT___CG_AAGT__AA__
13._EET_45_[ECU]
CGTT___CG_AAGT__AA__
14._EET_45_[ECU]
CGTT___CG_AAGT__AA__
15._EET_45_[ECU]
CGTT___CG_AAGT__AA__
16._EET_45_[ECU]
CGTT___CG_AAGT__AA__
17._EET_45_[ECU]
CGTT___CG_AAGT__AA__
18._EET_45_[ECU]
CGAT___CG_AGGT__AG__
19._GC-03-017-2-06
CGATTTGTAGCGCCAGGTGTTTAGCTAG
20._GC-03-017-2-06
CGATTTGTAGGGCCAGGTGTTTAGCTAG
21._EET_45_[ECU]
CGAT___GG_AGGT__AG__
22._GC-04-058-4-09
CGAACTGTGGCGACAAGGGGGTAGCCAA
23._EET_45_[ECU]
CGAA___CG_AAGG__AG__
 4344454647484950515253545556
_Input profile
CCGGTTCTAGAGAACTAAAGAAGTCTCC
1._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGTCTCC
2._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGTCTCC
3._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGTCTCC
4._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGTCTCC
5._GC-03-017-2-06
CCGGTTCTAGAGAACTAAAGAAGTCTCC
6._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGTCT_
7._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CC
8._EET_45_[ECU]
___CT________CTCC
9._EET_45_[ECU]
___CT________CTCC
10._EET_45_[ECU]
___CT________CTCC
11._EET_45_[ECU]
___CT________CTCC
12._EET_45_[ECU]
___CT________CTCC
13._EET_45_[ECU]
___CT________CTCC
14._EET_45_[ECU]
___CT_________CC
15._EET_45_[ECU]
___CT________CT_
16._EET_45_[ECU]
___CT_________CC
17._EET_45_[ECU]
___CT________CTCC
18._EET_45_[ECU]
___CT________CTCT
19._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGTCTCT
20._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGT_CT
21._EET_45_[ECU]
___CT_________CT
22._GC-04-058-4-09
CCTTAACCAGAGGGTTCCGGGGGGCTCT
23._EET_45_[ECU]
___CC________CTCT
 5758596061626364656667686970
_Input profile
GTAGCCCCCCCCCGGGCCAGGGGTAACC
1._GC-04-058-4-09
GTAGCCCCCCCCCGGGCCAGGGGTAACC
2._GC-04-058-4-09
GTAGCCCCCCCCCGGGCCAGGGGTAACC
3._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
4._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
5._GC-03-017-2-06
GTAGCCCCCCCCCGGGCCAGGGGTAACC
6._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
7._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
8._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
9._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
10._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
11._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
12._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
13._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
14._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
15._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
16._EET_45_[ECU]
____CTCCCG_CCAGGGGT__
17._EET_45_[ECU]
__CC_CTCCCG_CCAGGGGT__
18._EET_45_[ECU]
__CC_CCACCG_CCAAGTGG__
19._GC-03-017-2-06
TTAGCCCTCCACCGGGCCAAGTGGAGTT
20._GC-03-017-2-06
TTAGCCCTCTACCGGGACAAGTGGAGTT
21._EET_45_[ECU]
__CC_CTACCG_ACAAGTGG__
22._GC-04-058-4-09
GTAGCGCTCTACGGAGACGGGTTTAGCT
23._EET_45_[ECU]
__CG_CTACGG_ACGGGTTT__
 7172737475767778798081828384
_Input profile
CGAACTCCGGACACAAAACGCCAACCTT
1._GC-04-058-4-09
CGAACTCCGGACACAAAACGCCAACCTT
2._GC-04-058-4-09
CGAACTCCGGACACAAAACGCCAACCTT
3._GC-04-057-4-08
CGAACTCCGGACACAAAACGCCAACCTT
4._GC-04-057-4-08
CGAACTCCGGACACAAAACGCCAACCTT
5._GC-03-017-2-06
CGAACTCCGGACACAAAACGCCAACCTT
6._GC-04-057-4-08
CGAACTCC_ACACAAAACGCCAACCTT
7._GC-04-057-4-08
CGAACTCCGGACACAAAACGCCAACCTT
8._EET_45_[ECU]
_AACT_____AACG___TT
9._EET_45_[ECU]
_AACT_____AACG___TT
10._EET_45_[ECU]
_AACT_____AACG___TT
11._EET_45_[ECU]
_AACT_____AACG___TT
12._EET_45_[ECU]
_AACT_____AACG___TT
13._EET_45_[ECU]
_AACT_____AACG___TT
14._EET_45_[ECU]
_AACT_____AACG___TT
15._EET_45_[ECU]
_AACT_____AACG___TT
16._EET_45_[ECU]
_AGCT_____AACG___TT
17._EET_45_[ECU]
_AGCT_____AACG___TT
18._EET_45_[ECU]
_AGCT_____ACCG___TT
19._GC-03-017-2-06
CGAGCTCCAGCCACAAACCGCCATACTT
20._GC-03-017-2-06
CCAGCTCCAGCCACAAACCGCCATACTT
21._EET_45_[ECU]
_AGCT_____ACCG___TT
22._GC-04-058-4-09
CCGGTTCCAGACAAGGCCCGCTATACCT
23._EET_45_[ECU]
_GGTT_____CCCG___CT
 85868788899091929394    
_Input profile
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
1._GC-04-058-4-09
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
2._GC-04-058-4-09
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
3._GC-04-057-4-08
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
4._GC-04-057-4-08
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
5._GC-03-017-2-06
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
6._GC-04-057-4-08
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
7._GC-04-057-4-08
CTCTCTGGCCCCGGCTAT_X_XX_XX_XX_X
8._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
9._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
10._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
11._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
12._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
13._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
14._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
15._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
16._EET_45_[ECU]
CT__GG_CCGGCT__X_XX_XX_XX_X
17._EET_45_[ECU]
CT__GG_CCGGCT__X_XX_XX_XX_X
18._EET_45_[ECU]
CTCT_AG_CCGTCT__X_XX_XX_XX_X
19._GC-03-017-2-06
CTCTCTAGCTCCGTCTATGGX_XX_XX_XX_X
20._GC-03-017-2-06
CTCTCTAGCTCCGTCTATGGX_XX_XX_XX_X
21._EET_45_[ECU]
CTCT_AG_CCGTCT__X_XX_XX_XX_X
22._GC-04-058-4-09
CTCTTTAGCCCTGGTTATGGX_XX_XX_XX_X
23._EET_45_[ECU]
CTCT_AG_CTGGTT__X_XX_XX_XX_X

Input profile: EET_45_[ECU] GC-04-057-4-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._EET_45_[ECU] GC-04-058-4-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_45_[ECU] GC-04-058-4-09

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._EET_45_[ECU] GC-04-057-4-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._EET_45_[ECU] GC-04-057-4-08

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_45_[ECU] GC-03-017-2-06

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._EET_45_[ECU] GC-04-057-4-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._EET_45_[ECU] GC-04-057-4-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 1
 Dapeng Zhang, 2016

10._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 2
 Dapeng Zhang, 2016

11._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 7
 Dapeng Zhang, 2016

12._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 6
 Dapeng Zhang, 2016

13._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 8
 Dapeng Zhang, 2016

14._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 5
 Dapeng Zhang, 2016

15._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 8
 Dapeng Zhang, 2016

16._EET_45_[ECU]

95.8 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_45_[ECU]

93.4 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016

18._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

19._EET_45_[ECU] GC-03-017-2-06

77.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

20._EET_45_[ECU] GC-03-017-2-06

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

21._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

22._EET_45_[ECU] GC-04-058-4-09

59.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._EET_45_[ECU]

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240