SNP Profiles of EET-45   View Data

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 Key

 1234567891011121314
_Input profile
AACCCTACGGAGCTCTCCCTAGTTCTCT
1._EET_45_[ECU]
AACCCTAC____CCCTAG_CT_
2._GC-03-017-2-06
ATACCTACAGAGCTCTCTCTAGTTCTCT
3._EET_45_[ECU]
ATACCTAC____CTCTAG_CT_
4._EET_45_[ECU]
AACCCTAA____CCTT__CT_
5._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
6._EET_45_[ECU]
AACCCTCC____CCTT__CT_
7._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
8._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
9._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
10._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
11._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
12._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
13._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
14._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
15._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
16._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
17._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
18._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
19._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
20._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
21._GC-03-017-2-06
AAACCTCCAGAACTCTCCTTAATTCTCT
22._EET_45_[ECU]
AAAACTAC____CTTTGG_CC_
23._GC-04-058-4-09
AAAACTACAGAGCTCCCTTTGGCTCCCT
 1516171819202122232425262728
_Input profile
ATACAAAGCGCCCGCTAACTGGATAACG
1._EET_45_[ECU]
___AG__CG____ATAA_
2._GC-03-017-2-06
ATACAAAGCGCGCGCCAACTGGATAACG
3._EET_45_[ECU]
___AG__CG____ATAA_
4._EET_45_[ECU]
___AG__CG____AAAA_
5._EET_45_[ECU]
___AG__CG____AAAA_
6._EET_45_[ECU]
___AG__CG____AAAA_
7._EET_45_[ECU]
___AG__CG____AAAA_
8._EET_45_[ECU]
___AG__CG____AAAA_
9._EET_45_[ECU]
___AG__CG____AAAA_
10._EET_45_[ECU]
___AG__CG____AAAA_
11._EET_45_[ECU]
___AG__CG____AAAA_
12._EET_45_[ECU]
___AG__CG____AAAA_
13._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
14._EET_45_[ECU]
___AG__CG____AAAA_
15._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
16._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
17._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
18._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
19._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
20._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
21._GC-03-017-2-06
ATACAAAGCCCGCGCCAGCTGGAAAACG
22._EET_45_[ECU]
___AA__GG____ATAT_
23._GC-04-058-4-09
ATCCAAAAGGCGGGCTAGTTAGATATCG
 2930313233343536373839404142
_Input profile
CGATTTGTAGCGCCAGGTGTTTAGCTAG
1._EET_45_[ECU]
CGAT___CG_AGGT__AG__
2._GC-03-017-2-06
CGATTTGTAGGGCCAGGTGTTTAGCTAG
3._EET_45_[ECU]
CGAT___GG_AGGT__AG__
4._EET_45_[ECU]
CGTT___CG_AAGT__AA__
5._EET_45_[ECU]
CGTT___CG_AAGT__AA__
6._EET_45_[ECU]
CGTT___CG_AAGT__AA__
7._EET_45_[ECU]
CGTT___CG_AAGT__AA__
8._EET_45_[ECU]
CGTT___CG_AAGT__AA__
9._EET_45_[ECU]
CGTT___CG_AAGT__AA__
10._EET_45_[ECU]
CGTT___CG_AAGT__AA__
11._EET_45_[ECU]
CGTT___CG_AAGT__AA__
12._EET_45_[ECU]
CGTT___CG_AAGT__AA__
13._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
14._EET_45_[ECU]
CGTT___CG_AAGT__AA__
15._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
16._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
17._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
18._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
19._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
20._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
21._GC-03-017-2-06
CGTTCTTTAGCGACAAGTGTTTAACTGG
22._EET_45_[ECU]
CGAA___CG_AAGG__AG__
23._GC-04-058-4-09
CGAACTGTGGCGACAAGGGGGTAGCCAA
 4344454647484950515253545556
_Input profile
CGGGTTCTAGAGAACCACAGAGGTTTCT
1._EET_45_[ECU]
___CT_________CT
2._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGTTT_
3._EET_45_[ECU]
___CT__________
4._EET_45_[ECU]
___CT_________CT
5._EET_45_[ECU]
___CT_________CT
6._EET_45_[ECU]
___CT__________
7._EET_45_[ECU]
___CT_________CT
8._EET_45_[ECU]
___CT_________CT
9._EET_45_[ECU]
___CT_________CT
10._EET_45_[ECU]
___CT_________CT
11._EET_45_[ECU]
___CT_________CT
12._EET_45_[ECU]
___CT_________CT
13._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
14._EET_45_[ECU]
___CT__________
15._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT__
16._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGT_CT
17._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGT_CT
18._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
19._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
20._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
21._GC-03-017-2-06
CCGGTTCTAGAGAACTAAAGAAGT_CT
22._EET_45_[ECU]
___CC_________CT
23._GC-04-058-4-09
CCTTAACCAGAGGGTTCCGGGGGGTTCT
 5758596061626364656667686970
_Input profile
CTTTAGCCCTCCACCGGGCCAAGTGGAG
1._EET_45_[ECU]
CT__CC_CCACCG_CCAAGTGG_
2._GC-03-017-2-06
CTTTAGCCCTCTACCGGGACAAGTGGAG
3._EET_45_[ECU]
CT__CC_CTACCG_ACAAGTGG_
4._EET_45_[ECU]
CC__CC_CTCCCG_CCAGGGGT_
5._EET_45_[ECU]
___CC_CCCCCG_CCAGGGGT_
6._EET_45_[ECU]
CC____CTCCCG_CCAGGGGT_
7._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
8._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
9._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
10._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
11._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
12._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
13._GC-04-057-4-08
_GTAGCCCCCCCCCGGGCCAGGGGTAA
14._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
15._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
16._GC-04-058-4-09
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
17._GC-04-058-4-09
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
18._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
19._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
20._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
21._GC-03-017-2-06
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
22._EET_45_[ECU]
CT__CG_CTACGG_ACGGGTTT_
23._GC-04-058-4-09
CTGTAGCGCTCTACGGAGACGGGTTTAG
 7172737475767778798081828384
_Input profile
TTCGAGCTCCAGCCACAAACCGCCATAC
1._EET_45_[ECU]
__AGCT_____ACCG___
2._GC-03-017-2-06
TTCCAGCTCCAGCCACAAACCGCCATAC
3._EET_45_[ECU]
__AGCT_____ACCG___
4._EET_45_[ECU]
__AGCT_____AACG___
5._EET_45_[ECU]
__AACT_____AACG___
6._EET_45_[ECU]
__AGCT_____AACG___
7._EET_45_[ECU]
__AACT_____AACG___
8._EET_45_[ECU]
__AACT_____AACG___
9._EET_45_[ECU]
__AACT_____AACG___
10._EET_45_[ECU]
__AACT_____AACG___
11._EET_45_[ECU]
__AACT_____AACG___
12._EET_45_[ECU]
__AACT_____AACG___
13._GC-04-057-4-08
CCCGAACTCC_ACACAAAACGCCAACC
14._EET_45_[ECU]
__AACT_____AACG___
15._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
16._GC-04-058-4-09
CCCGAACTCCGGACACAAAACGCCAACC
17._GC-04-058-4-09
CCCGAACTCCGGACACAAAACGCCAACC
18._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
19._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
20._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
21._GC-03-017-2-06
CCCGAACTCCGGACACAAAACGCCAACC
22._EET_45_[ECU]
__GGTT_____CCCG___
23._GC-04-058-4-09
CTCCGGTTCCAGACAAGGCCCGCTATAC
 8586878889909192939495   
_Input profile
TTCTCTCTAGCTCCGTCTATGGX_XX_XX_X
1._EET_45_[ECU]
TTCTCT_AG_CCGTCT__X_XX_XX_X
2._GC-03-017-2-06
TTCTCTCTAGCTCCGTCTATGGX_XX_XX_X
3._EET_45_[ECU]
TTCTCT_AG_CCGTCT__X_XX_XX_X
4._EET_45_[ECU]
TTCT__GG_CCGGCT__X_XX_XX_X
5._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
6._EET_45_[ECU]
TTCT__GG_CCGGCT__X_XX_XX_X
7._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
8._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
9._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
10._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
11._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
12._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
13._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
14._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
15._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTAT_X_XX_XX_X
16._GC-04-058-4-09
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
17._GC-04-058-4-09
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
18._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
19._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
20._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
21._GC-03-017-2-06
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
22._EET_45_[ECU]
CTCTCT_AG_CTGGTT__X_XX_XX_X
23._GC-04-058-4-09
CTCTCTTTAGCCCTGGTTATGGX_XX_XX_X

Input profile: EET_45_[ECU] GC-03-017-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

1._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

2._EET_45_[ECU] GC-03-017-2-06

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

3._EET_45_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

4._EET_45_[ECU]

80.3 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016

5._EET_45_[ECU]

79.5 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 8
 Dapeng Zhang, 2016

6._EET_45_[ECU]

79.2 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

7._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

8._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 1
 Dapeng Zhang, 2016

9._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 2
 Dapeng Zhang, 2016

10._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 7
 Dapeng Zhang, 2016

11._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 6
 Dapeng Zhang, 2016

12._EET_45_[ECU]

78.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 8
 Dapeng Zhang, 2016

13._EET_45_[ECU] GC-04-057-4-08

78.3 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

14._EET_45_[ECU]

78.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 5
 Dapeng Zhang, 2016

15._EET_45_[ECU] GC-04-057-4-08

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._EET_45_[ECU] GC-04-058-4-09

77.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

17._EET_45_[ECU] GC-04-058-4-09

77.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

18._EET_45_[ECU] GC-04-057-4-08

77.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

19._EET_45_[ECU] GC-04-057-4-08

77.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

20._EET_45_[ECU] GC-04-057-4-08

77.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._EET_45_[ECU] GC-03-017-2-06

77.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

22._EET_45_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._EET_45_[ECU] GC-04-058-4-09

64.2 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240