SNP Profiles of EET-45   View Data

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 Key

 1234567891011121314
_Input profile
ATACCTACAGAGCTCTCTCTAGTTCTCT
1._EET_45_[ECU]
ATACCTAC____CTCTAG_CT_
2._GC-03-017-2-06
AACCCTACGGAGCTCTCCCTAGTTCTCT
3._EET_45_[ECU]
AACCCTAC____CCCTAG_CT_
4._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
5._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
6._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
7._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
8._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
9._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
10._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
11._GC-03-017-2-06
AAACCTCCAGAACTCTCCTTAATTCTCT
12._EET_45_[ECU]
AACCCTAA____CCTT__CT_
13._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
14._EET_45_[ECU]
AACCCTCC____CCTT__CT_
15._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
16._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
17._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
18._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
19._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
20._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
21._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
22._EET_45_[ECU]
AAAACTAC____CTTTGG_CC_
23._GC-04-058-4-09
AAAACTACAGAGCTCCCTTTGGCTCCCT
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGCGCCAACTGGATAACG
1._EET_45_[ECU]
___AG__CG____ATAA_
2._GC-03-017-2-06
ATACAAAGCGCCCGCTAACTGGATAACG
3._EET_45_[ECU]
___AG__CG____ATAA_
4._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
5._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
6._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
7._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
8._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
9._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
10._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
11._GC-03-017-2-06
ATACAAAGCCCGCGCCAGCTGGAAAACG
12._EET_45_[ECU]
___AG__CG____AAAA_
13._EET_45_[ECU]
___AG__CG____AAAA_
14._EET_45_[ECU]
___AG__CG____AAAA_
15._EET_45_[ECU]
___AG__CG____AAAA_
16._EET_45_[ECU]
___AG__CG____AAAA_
17._EET_45_[ECU]
___AG__CG____AAAA_
18._EET_45_[ECU]
___AG__CG____AAAA_
19._EET_45_[ECU]
___AG__CG____AAAA_
20._EET_45_[ECU]
___AG__CG____AAAA_
21._EET_45_[ECU]
___AG__CG____AAAA_
22._EET_45_[ECU]
___AA__GG____ATAT_
23._GC-04-058-4-09
ATCCAAAAGGCGGGCTAGTTAGATATCG
 2930313233343536373839404142
_Input profile
CGATTTGTAGGGCCAGGTGTTTAGCTAG
1._EET_45_[ECU]
CGAT___GG_AGGT__AG__
2._GC-03-017-2-06
CGATTTGTAGCGCCAGGTGTTTAGCTAG
3._EET_45_[ECU]
CGAT___CG_AGGT__AG__
4._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
5._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
6._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
7._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
8._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
9._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
10._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
11._GC-03-017-2-06
CGTTCTTTAGCGACAAGTGTTTAACTGG
12._EET_45_[ECU]
CGTT___CG_AAGT__AA__
13._EET_45_[ECU]
CGTT___CG_AAGT__AA__
14._EET_45_[ECU]
CGTT___CG_AAGT__AA__
15._EET_45_[ECU]
CGTT___CG_AAGT__AA__
16._EET_45_[ECU]
CGTT___CG_AAGT__AA__
17._EET_45_[ECU]
CGTT___CG_AAGT__AA__
18._EET_45_[ECU]
CGTT___CG_AAGT__AA__
19._EET_45_[ECU]
CGTT___CG_AAGT__AA__
20._EET_45_[ECU]
CGTT___CG_AAGT__AA__
21._EET_45_[ECU]
CGTT___CG_AAGT__AA__
22._EET_45_[ECU]
CGAA___CG_AAGG__AG__
23._GC-04-058-4-09
CGAACTGTGGCGACAAGGGGGTAGCCAA
 4344454647484950515253545556
_Input profile
CGGGTTCTAGAGAACCACAGAGGTTTCT
1._EET_45_[ECU]
___CT_________CT
2._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGTTTCT
3._EET_45_[ECU]
___CT_________CT
4._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT__
5._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CC
6._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGT_CC
7._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGT_CC
8._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CC
9._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CC
10._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CC
11._GC-03-017-2-06
CCGGTTCTAGAGAACTAAAGAAGT_CC
12._EET_45_[ECU]
___CT_________CC
13._EET_45_[ECU]
___CT__________
14._EET_45_[ECU]
___CT_________CC
15._EET_45_[ECU]
___CT_________CC
16._EET_45_[ECU]
___CT_________CC
17._EET_45_[ECU]
___CT_________CC
18._EET_45_[ECU]
___CT_________CC
19._EET_45_[ECU]
___CT_________CC
20._EET_45_[ECU]
___CT_________CC
21._EET_45_[ECU]
___CT_________CC
22._EET_45_[ECU]
___CC_________CT
23._GC-04-058-4-09
CCTTAACCAGAGGGTTCCGGGGGGTTCT
 5758596061626364656667686970
_Input profile
TTAGCCCTCTACCGGGACAAGTGGAGTT
1._EET_45_[ECU]
__CC_CTACCG_ACAAGTGG__
2._GC-03-017-2-06
TTAGCCCTCCACCGGGCCAAGTGGAGTT
3._EET_45_[ECU]
__CC_CCACCG_CCAAGTGG__
4._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
5._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
6._GC-04-058-4-09
GTAGCCCCCCCCCGGGCCAGGGGTAACC
7._GC-04-058-4-09
GTAGCCCCCCCCCGGGCCAGGGGTAACC
8._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
9._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
10._GC-04-057-4-08
GTAGCCCCCCCCCGGGCCAGGGGTAACC
11._GC-03-017-2-06
GTAGCCCCCCCCCGGGCCAGGGGTAACC
12._EET_45_[ECU]
__CC_CTCCCG_CCAGGGGT__
13._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
14._EET_45_[ECU]
____CTCCCG_CCAGGGGT__
15._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
16._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
17._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
18._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
19._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
20._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
21._EET_45_[ECU]
__CC_CCCCCG_CCAGGGGT__
22._EET_45_[ECU]
__CG_CTACGG_ACGGGTTT__
23._GC-04-058-4-09
GTAGCGCTCTACGGAGACGGGTTTAGCT
 7172737475767778798081828384
_Input profile
CCAGCTCCAGCCACAAACCGCCATACTT
1._EET_45_[ECU]
_AGCT_____ACCG___TT
2._GC-03-017-2-06
CGAGCTCCAGCCACAAACCGCCATACTT
3._EET_45_[ECU]
_AGCT_____ACCG___TT
4._GC-04-057-4-08
CGAACTCC_ACACAAAACGCCAACCTT
5._GC-04-057-4-08
CGAACTCCGGACACAAAACGCCAACCTT
6._GC-04-058-4-09
CGAACTCCGGACACAAAACGCCAACCTT
7._GC-04-058-4-09
CGAACTCCGGACACAAAACGCCAACCTT
8._GC-04-057-4-08
CGAACTCCGGACACAAAACGCCAACCTT
9._GC-04-057-4-08
CGAACTCCGGACACAAAACGCCAACCTT
10._GC-04-057-4-08
CGAACTCCGGACACAAAACGCCAACCTT
11._GC-03-017-2-06
CGAACTCCGGACACAAAACGCCAACCTT
12._EET_45_[ECU]
_AGCT_____AACG___TT
13._EET_45_[ECU]
_AACT_____AACG___TT
14._EET_45_[ECU]
_AGCT_____AACG___TT
15._EET_45_[ECU]
_AACT_____AACG___TT
16._EET_45_[ECU]
_AACT_____AACG___TT
17._EET_45_[ECU]
_AACT_____AACG___TT
18._EET_45_[ECU]
_AACT_____AACG___TT
19._EET_45_[ECU]
_AACT_____AACG___TT
20._EET_45_[ECU]
_AACT_____AACG___TT
21._EET_45_[ECU]
_AACT_____AACG___TT
22._EET_45_[ECU]
_GGTT_____CCCG___CT
23._GC-04-058-4-09
CCGGTTCCAGACAAGGCCCGCTATACCT
 85868788899091929394    
_Input profile
CTCTCTAGCTCCGTCTATGGX_XX_XX_XX_X
1._EET_45_[ECU]
CTCT_AG_CCGTCT__X_XX_XX_XX_X
2._GC-03-017-2-06
CTCTCTAGCTCCGTCTATGGX_XX_XX_XX_X
3._EET_45_[ECU]
CTCT_AG_CCGTCT__X_XX_XX_XX_X
4._GC-04-057-4-08
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
5._GC-04-057-4-08
CTCTCTGGCCCCGGCTAT_X_XX_XX_XX_X
6._GC-04-058-4-09
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
7._GC-04-058-4-09
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
8._GC-04-057-4-08
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
9._GC-04-057-4-08
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
10._GC-04-057-4-08
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
11._GC-03-017-2-06
CTCTCTGGCCCCGGCTATAGX_XX_XX_XX_X
12._EET_45_[ECU]
CT__GG_CCGGCT__X_XX_XX_XX_X
13._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
14._EET_45_[ECU]
CT__GG_CCGGCT__X_XX_XX_XX_X
15._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
16._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
17._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
18._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
19._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
20._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
21._EET_45_[ECU]
CTCT_GG_CCGGCT__X_XX_XX_XX_X
22._EET_45_[ECU]
CTCT_AG_CTGGTT__X_XX_XX_XX_X
23._GC-04-058-4-09
CTCTTTAGCCCTGGTTATGGX_XX_XX_XX_X

Input profile: EET_45_[ECU] GC-03-017-2-06

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

1._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

2._EET_45_[ECU] GC-03-017-2-06

94.7 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

3._EET_45_[ECU]

92.3 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

4._EET_45_[ECU] GC-04-057-4-08

76.9 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._EET_45_[ECU] GC-04-057-4-08

76.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._EET_45_[ECU] GC-04-058-4-09

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

7._EET_45_[ECU] GC-04-058-4-09

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._EET_45_[ECU] GC-04-057-4-08

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._EET_45_[ECU] GC-04-057-4-08

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._EET_45_[ECU] GC-04-057-4-08

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._EET_45_[ECU] GC-03-017-2-06

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._EET_45_[ECU]

74.3 %
37 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016

13._EET_45_[ECU]

73.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 8
 Dapeng Zhang, 2016

14._EET_45_[ECU]

73.6 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

15._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

16._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 1
 Dapeng Zhang, 2016

17._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 2
 Dapeng Zhang, 2016

18._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 5
 Dapeng Zhang, 2016

19._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 7
 Dapeng Zhang, 2016

20._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 6
 Dapeng Zhang, 2016

21._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 8
 Dapeng Zhang, 2016

22._EET_45_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

23._EET_45_[ECU] GC-04-058-4-09

66 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240