SNP Profiles of EET-45   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTTTGGCTCCCT
1._EET_45_[ECU]
AAAACTAC____CTTTGG_CC_
2._EET_45_[ECU]
ATACCTAC____CTCTAG_CT_
3._GC-03-017-2-06
ATACCTACAGAGCTCTCTCTAGTTCTCT
4._EET_45_[ECU]
AACCCTAC____CCCTAG_CT_
5._GC-03-017-2-06
AACCCTACGGAGCTCTCCCTAGTTCTCT
6._EET_45_[ECU]
AACCCTAA____CCTT__CT_
7._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
8._EET_45_[ECU]
AACCCTCC____CCTT__CT_
9._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
10._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
11._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
12._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
13._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
14._GC-03-017-2-06
AAACCTCCAGAACTCTCCTTAATTCTCT
15._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
16._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
17._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
18._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
19._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
20._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
21._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
22._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
23._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._EET_45_[ECU]
___AA__GG____ATAT_
2._EET_45_[ECU]
___AG__CG____ATAA_
3._GC-03-017-2-06
ATACAAAGCGCGCGCCAACTGGATAACG
4._EET_45_[ECU]
___AG__CG____ATAA_
5._GC-03-017-2-06
ATACAAAGCGCCCGCTAACTGGATAACG
6._EET_45_[ECU]
___AG__CG____AAAA_
7._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
8._EET_45_[ECU]
___AG__CG____AAAA_
9._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
10._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
11._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
12._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
13._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
14._GC-03-017-2-06
ATACAAAGCCCGCGCCAGCTGGAAAACG
15._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
16._EET_45_[ECU]
___AG__CG____AAAA_
17._EET_45_[ECU]
___AG__CG____AAAA_
18._EET_45_[ECU]
___AG__CG____AAAA_
19._EET_45_[ECU]
___AG__CG____AAAA_
20._EET_45_[ECU]
___AG__CG____AAAA_
21._EET_45_[ECU]
___AG__CG____AAAA_
22._EET_45_[ECU]
___AG__CG____AAAA_
23._EET_45_[ECU]
___AG__CG____AAAA_
 2930313233343536373839404142
_Input profile
CGAACTGTGGCGACAAGGGGGTAGCCAA
1._EET_45_[ECU]
CGAA___CG_AAGG__AG__
2._EET_45_[ECU]
CGAT___GG_AGGT__AG__
3._GC-03-017-2-06
CGATTTGTAGGGCCAGGTGTTTAGCTAG
4._EET_45_[ECU]
CGAT___CG_AGGT__AG__
5._GC-03-017-2-06
CGATTTGTAGCGCCAGGTGTTTAGCTAG
6._EET_45_[ECU]
CGTT___CG_AAGT__AA__
7._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
8._EET_45_[ECU]
CGTT___CG_AAGT__AA__
9._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
10._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
11._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
12._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
13._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
14._GC-03-017-2-06
CGTTCTTTAGCGACAAGTGTTTAACTGG
15._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
16._EET_45_[ECU]
CGTT___CG_AAGT__AA__
17._EET_45_[ECU]
CGTT___CG_AAGT__AA__
18._EET_45_[ECU]
CGTT___CG_AAGT__AA__
19._EET_45_[ECU]
CGTT___CG_AAGT__AA__
20._EET_45_[ECU]
CGTT___CG_AAGT__AA__
21._EET_45_[ECU]
CGTT___CG_AAGT__AA__
22._EET_45_[ECU]
CGTT___CG_AAGT__AA__
23._EET_45_[ECU]
CGTT___CG_AAGT__AA__
 4344454647484950515253545556
_Input profile
CCTTAACCAGAGGGTTCCGGGGGGTTCT
1._EET_45_[ECU]
___CC_________CT
2._EET_45_[ECU]
___CT__________
3._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGTTT_
4._EET_45_[ECU]
___CT_________CT
5._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGTTTCT
6._EET_45_[ECU]
___CT_________CT
7._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
8._EET_45_[ECU]
___CT__________
9._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGT_CT
10._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGT_CT
11._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
12._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
13._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_CT
14._GC-03-017-2-06
CCGGTTCTAGAGAACTAAAGAAGT_CT
15._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT__
16._EET_45_[ECU]
___CT_________CT
17._EET_45_[ECU]
___CT_________CT
18._EET_45_[ECU]
___CT_________CT
19._EET_45_[ECU]
___CT_________CT
20._EET_45_[ECU]
___CT_________CT
21._EET_45_[ECU]
___CT_________CT
22._EET_45_[ECU]
___CT_________CT
23._EET_45_[ECU]
___CT__________
 5758596061626364656667686970
_Input profile
CTGTAGCGCTCTACGGAGACGGGTTTAG
1._EET_45_[ECU]
CT__CG_CTACGG_ACGGGTTT_
2._EET_45_[ECU]
CT__CC_CTACCG_ACAAGTGG_
3._GC-03-017-2-06
CTTTAGCCCTCTACCGGGACAAGTGGAG
4._EET_45_[ECU]
CT__CC_CCACCG_CCAAGTGG_
5._GC-03-017-2-06
CTTTAGCCCTCCACCGGGCCAAGTGGAG
6._EET_45_[ECU]
CC__CC_CTCCCG_CCAGGGGT_
7._GC-04-057-4-08
_GTAGCCCCCCCCCGGGCCAGGGGTAA
8._EET_45_[ECU]
CC____CTCCCG_CCAGGGGT_
9._GC-04-058-4-09
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
10._GC-04-058-4-09
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
11._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
12._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
13._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
14._GC-03-017-2-06
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
15._GC-04-057-4-08
CCGTAGCCCCCCCCCGGGCCAGGGGTAA
16._EET_45_[ECU]
___CC_CCCCCG_CCAGGGGT_
17._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
18._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
19._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
20._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
21._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
22._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
23._EET_45_[ECU]
CC__CC_CCCCCG_CCAGGGGT_
 7172737475767778798081828384
_Input profile
CTCCGGTTCCAGACAAGGCCCGCTATAC
1._EET_45_[ECU]
__GGTT_____CCCG___
2._EET_45_[ECU]
__AGCT_____ACCG___
3._GC-03-017-2-06
TTCCAGCTCCAGCCACAAACCGCCATAC
4._EET_45_[ECU]
__AGCT_____ACCG___
5._GC-03-017-2-06
TTCGAGCTCCAGCCACAAACCGCCATAC
6._EET_45_[ECU]
__AGCT_____AACG___
7._GC-04-057-4-08
CCCGAACTCC_ACACAAAACGCCAACC
8._EET_45_[ECU]
__AGCT_____AACG___
9._GC-04-058-4-09
CCCGAACTCCGGACACAAAACGCCAACC
10._GC-04-058-4-09
CCCGAACTCCGGACACAAAACGCCAACC
11._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
12._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
13._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
14._GC-03-017-2-06
CCCGAACTCCGGACACAAAACGCCAACC
15._GC-04-057-4-08
CCCGAACTCCGGACACAAAACGCCAACC
16._EET_45_[ECU]
__AACT_____AACG___
17._EET_45_[ECU]
__AACT_____AACG___
18._EET_45_[ECU]
__AACT_____AACG___
19._EET_45_[ECU]
__AACT_____AACG___
20._EET_45_[ECU]
__AACT_____AACG___
21._EET_45_[ECU]
__AACT_____AACG___
22._EET_45_[ECU]
__AACT_____AACG___
23._EET_45_[ECU]
__AACT_____AACG___
 8586878889909192939495   
_Input profile
CTCTCTTTAGCCCTGGTTATGGX_XX_XX_X
1._EET_45_[ECU]
CTCTCT_AG_CTGGTT__X_XX_XX_X
2._EET_45_[ECU]
TTCTCT_AG_CCGTCT__X_XX_XX_X
3._GC-03-017-2-06
TTCTCTCTAGCTCCGTCTATGGX_XX_XX_X
4._EET_45_[ECU]
TTCTCT_AG_CCGTCT__X_XX_XX_X
5._GC-03-017-2-06
TTCTCTCTAGCTCCGTCTATGGX_XX_XX_X
6._EET_45_[ECU]
TTCT__GG_CCGGCT__X_XX_XX_X
7._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
8._EET_45_[ECU]
TTCT__GG_CCGGCT__X_XX_XX_X
9._GC-04-058-4-09
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
10._GC-04-058-4-09
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
11._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
12._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
13._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
14._GC-03-017-2-06
TTCTCTCTGGCCCCGGCTATAGX_XX_XX_X
15._GC-04-057-4-08
TTCTCTCTGGCCCCGGCTAT_X_XX_XX_X
16._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
17._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
18._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
19._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
20._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
21._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
22._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X
23._EET_45_[ECU]
TTCTCT_GG_CCGGCT__X_XX_XX_X

Input profile: EET_45_[ECU] GC-04-058-4-09

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._EET_45_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._EET_45_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

3._EET_45_[ECU] GC-03-017-2-06

66 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

4._EET_45_[ECU]

65 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

5._EET_45_[ECU] GC-03-017-2-06

64.2 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

6._EET_45_[ECU]

60.5 %
38 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016

7._EET_45_[ECU] GC-04-057-4-08

59.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._EET_45_[ECU]

59.7 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

9._EET_45_[ECU] GC-04-058-4-09

59.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._EET_45_[ECU] GC-04-058-4-09

59.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

11._EET_45_[ECU] GC-04-057-4-08

59.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._EET_45_[ECU] GC-04-057-4-08

59.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._EET_45_[ECU] GC-04-057-4-08

59.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._EET_45_[ECU] GC-03-017-2-06

59.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._EET_45_[ECU] GC-04-057-4-08

59.2 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._EET_45_[ECU]

59 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 8
 Dapeng Zhang, 2016

17._EET_45_[ECU]

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

18._EET_45_[ECU]

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 1
 Dapeng Zhang, 2016

19._EET_45_[ECU]

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 2
 Dapeng Zhang, 2016

20._EET_45_[ECU]

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 7
 Dapeng Zhang, 2016

21._EET_45_[ECU]

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 6
 Dapeng Zhang, 2016

22._EET_45_[ECU]

58.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 8
 Dapeng Zhang, 2016

23._EET_45_[ECU]

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 5
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240