SNP Profiles of EET-45   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCAGAACTCTCCTTAATTCTCT
1._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
2._GC-04-058-4-09
AAACCTCCAGAACTCTCCTTAATTCTCT
3._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
4._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
5._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
6._GC-03-017-2-06
AAACCTCCAGAACTCTCCTTAATTCTCT
7._GC-04-057-4-08
AAACCTCCAGAACTCTCCTTAATTCTCT
8._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
9._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
10._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
11._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
12._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
13._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
14._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
15._EET_45_[ECU]
AAACCTCC____CCTTAA_CT_
16._EET_45_[ECU]
AACCCTCC____CCTT__CT_
17._EET_45_[ECU]
AACCCTAA____CCTT__CT_
18._EET_45_[ECU]
AACCCTAC____CCCTAG_CT_
19._GC-03-017-2-06
AACCCTACGGAGCTCTCCCTAGTTCTCT
20._GC-03-017-2-06
ATACCTACAGAGCTCTCTCTAGTTCTCT
21._EET_45_[ECU]
ATACCTAC____CTCTAG_CT_
22._GC-04-058-4-09
AAAACTACAGAGCTCCCTTTGGCTCCCT
23._EET_45_[ECU]
AAAACTAC____CTTTGG_CC_
 1516171819202122232425262728
_Input profile
ATACAAAGCCCGCGCCAGCTGGAAAACG
1._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
2._GC-04-058-4-09
ATACAAAGCCCGCGCCAGCTGGAAAACG
3._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
4._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
5._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
6._GC-03-017-2-06
ATACAAAGCCCGCGCCAGCTGGAAAACG
7._GC-04-057-4-08
ATACAAAGCCCGCGCCAGCTGGAAAACG
8._EET_45_[ECU]
___AG__CG____AAAA_
9._EET_45_[ECU]
___AG__CG____AAAA_
10._EET_45_[ECU]
___AG__CG____AAAA_
11._EET_45_[ECU]
___AG__CG____AAAA_
12._EET_45_[ECU]
___AG__CG____AAAA_
13._EET_45_[ECU]
___AG__CG____AAAA_
14._EET_45_[ECU]
___AG__CG____AAAA_
15._EET_45_[ECU]
___AG__CG____AAAA_
16._EET_45_[ECU]
___AG__CG____AAAA_
17._EET_45_[ECU]
___AG__CG____AAAA_
18._EET_45_[ECU]
___AG__CG____ATAA_
19._GC-03-017-2-06
ATACAAAGCGCCCGCTAACTGGATAACG
20._GC-03-017-2-06
ATACAAAGCGCGCGCCAACTGGATAACG
21._EET_45_[ECU]
___AG__CG____ATAA_
22._GC-04-058-4-09
ATCCAAAAGGCGGGCTAGTTAGATATCG
23._EET_45_[ECU]
___AA__GG____ATAT_
 2930313233343536373839404142
_Input profile
CGTTCTTTAGCGACAAGTGTTTAACTGG
1._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
2._GC-04-058-4-09
CGTTCTTTAGCGACAAGTGTTTAACTGG
3._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
4._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
5._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
6._GC-03-017-2-06
CGTTCTTTAGCGACAAGTGTTTAACTGG
7._GC-04-057-4-08
CGTTCTTTAGCGACAAGTGTTTAACTGG
8._EET_45_[ECU]
CGTT___CG_AAGT__AA__
9._EET_45_[ECU]
CGTT___CG_AAGT__AA__
10._EET_45_[ECU]
CGTT___CG_AAGT__AA__
11._EET_45_[ECU]
CGTT___CG_AAGT__AA__
12._EET_45_[ECU]
CGTT___CG_AAGT__AA__
13._EET_45_[ECU]
CGTT___CG_AAGT__AA__
14._EET_45_[ECU]
CGTT___CG_AAGT__AA__
15._EET_45_[ECU]
CGTT___CG_AAGT__AA__
16._EET_45_[ECU]
CGTT___CG_AAGT__AA__
17._EET_45_[ECU]
CGTT___CG_AAGT__AA__
18._EET_45_[ECU]
CGAT___CG_AGGT__AG__
19._GC-03-017-2-06
CGATTTGTAGCGCCAGGTGTTTAGCTAG
20._GC-03-017-2-06
CGATTTGTAGGGCCAGGTGTTTAGCTAG
21._EET_45_[ECU]
CGAT___GG_AGGT__AG__
22._GC-04-058-4-09
CGAACTGTGGCGACAAGGGGGTAGCCAA
23._EET_45_[ECU]
CGAA___CG_AAGG__AG__
 4344454647484950515253545556
_Input profile
CCGGTTCTAGAGAACTAAAGAAGTCCGT
1._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGTCCGT
2._GC-04-058-4-09
CCGGTTCTAGAGAACTAAAGAAGTCCGT
3._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGTCCGT
4._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGTCCGT
5._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGTCCGT
6._GC-03-017-2-06
CCGGTTCTAGAGAACTAAAGAAGTCCGT
7._GC-04-057-4-08
CCGGTTCTAGAGAACTAAAGAAGT_GT
8._EET_45_[ECU]
___CT________CC_
9._EET_45_[ECU]
___CT________CC_
10._EET_45_[ECU]
___CT________CC_
11._EET_45_[ECU]
___CT________CC_
12._EET_45_[ECU]
___CT________CC_
13._EET_45_[ECU]
___CT________CC_
14._EET_45_[ECU]
___CT________CC_
15._EET_45_[ECU]
___CT__________
16._EET_45_[ECU]
___CT________CC_
17._EET_45_[ECU]
___CT________CC_
18._EET_45_[ECU]
___CT________CT_
19._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGTCTTT
20._GC-03-017-2-06
CGGGTTCTAGAGAACCACAGAGGTCTTT
21._EET_45_[ECU]
___CT________CT_
22._GC-04-058-4-09
CCTTAACCAGAGGGTTCCGGGGGGCTGT
23._EET_45_[ECU]
___CC________CT_
 5758596061626364656667686970
_Input profile
AGCCCCCCCCCGGGCCAGGGGTAACCCG
1._GC-04-058-4-09
AGCCCCCCCCCGGGCCAGGGGTAACCCG
2._GC-04-058-4-09
AGCCCCCCCCCGGGCCAGGGGTAACCCG
3._GC-04-057-4-08
AGCCCCCCCCCGGGCCAGGGGTAACCCG
4._GC-04-057-4-08
AGCCCCCCCCCGGGCCAGGGGTAACCCG
5._GC-04-057-4-08
AGCCCCCCCCCGGGCCAGGGGTAACCCG
6._GC-03-017-2-06
AGCCCCCCCCCGGGCCAGGGGTAACCCG
7._GC-04-057-4-08
AGCCCCCCCCCGGGCCAGGGGTAACCCG
8._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
9._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
10._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
11._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
12._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
13._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
14._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
15._EET_45_[ECU]
_CC_CCCCCG_CCAGGGGT___
16._EET_45_[ECU]
___CTCCCG_CCAGGGGT___
17._EET_45_[ECU]
_CC_CTCCCG_CCAGGGGT___
18._EET_45_[ECU]
_CC_CCACCG_CCAAGTGG___
19._GC-03-017-2-06
AGCCCTCCACCGGGCCAAGTGGAGTTCG
20._GC-03-017-2-06
AGCCCTCTACCGGGACAAGTGGAGTTCC
21._EET_45_[ECU]
_CC_CTACCG_ACAAGTGG___
22._GC-04-058-4-09
AGCGCTCTACGGAGACGGGTTTAGCTCC
23._EET_45_[ECU]
_CG_CTACGG_ACGGGTTT___
 7172737475767778798081828384
_Input profile
AACTCCGGACACAAAACGCCAACCTTCT
1._GC-04-058-4-09
AACTCCGGACACAAAACGCCAACCTTCT
2._GC-04-058-4-09
AACTCCGGACACAAAACGCCAACCTTCT
3._GC-04-057-4-08
AACTCCGGACACAAAACGCCAACCTTCT
4._GC-04-057-4-08
AACTCCGGACACAAAACGCCAACCTTCT
5._GC-04-057-4-08
AACTCCGGACACAAAACGCCAACCTTCT
6._GC-03-017-2-06
AACTCCGGACACAAAACGCCAACCTTCT
7._GC-04-057-4-08
AACTCC_ACACAAAACGCCAACCTTCT
8._EET_45_[ECU]
AACT_____AACG___TTCT
9._EET_45_[ECU]
AACT_____AACG___TTCT
10._EET_45_[ECU]
AACT_____AACG___TTCT
11._EET_45_[ECU]
AACT_____AACG___TTCT
12._EET_45_[ECU]
AACT_____AACG___TTCT
13._EET_45_[ECU]
AACT_____AACG___TTCT
14._EET_45_[ECU]
AACT_____AACG___TTCT
15._EET_45_[ECU]
AACT_____AACG___TTCT
16._EET_45_[ECU]
AGCT_____AACG___TTCT
17._EET_45_[ECU]
AGCT_____AACG___TTCT
18._EET_45_[ECU]
AGCT_____ACCG___TTCT
19._GC-03-017-2-06
AGCTCCAGCCACAAACCGCCATACTTCT
20._GC-03-017-2-06
AGCTCCAGCCACAAACCGCCATACTTCT
21._EET_45_[ECU]
AGCT_____ACCG___TTCT
22._GC-04-058-4-09
GGTTCCAGACAAGGCCCGCTATACCTCT
23._EET_45_[ECU]
GGTT_____CCCG___CTCT
 8586878889909192      
_Input profile
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
1._GC-04-058-4-09
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
2._GC-04-058-4-09
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
3._GC-04-057-4-08
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
4._GC-04-057-4-08
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
5._GC-04-057-4-08
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
6._GC-03-017-2-06
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
7._GC-04-057-4-08
CTCTGGCCCCGGCTATX_XX_XX_XX_XX_XX_X
8._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
9._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
10._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
11._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
12._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
13._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
14._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
15._EET_45_[ECU]
CT_GG_CCGGCT_X_XX_XX_XX_XX_XX_X
16._EET_45_[ECU]
__GG_CCGGCT_X_XX_XX_XX_XX_XX_X
17._EET_45_[ECU]
__GG_CCGGCT_X_XX_XX_XX_XX_XX_X
18._EET_45_[ECU]
CT_AG_CCGTCT_X_XX_XX_XX_XX_XX_X
19._GC-03-017-2-06
CTCTAGCTCCGTCTATX_XX_XX_XX_XX_XX_X
20._GC-03-017-2-06
CTCTAGCTCCGTCTATX_XX_XX_XX_XX_XX_X
21._EET_45_[ECU]
CT_AG_CCGTCT_X_XX_XX_XX_XX_XX_X
22._GC-04-058-4-09
CTTTAGCCCTGGTTATX_XX_XX_XX_XX_XX_X
23._EET_45_[ECU]
CT_AG_CTGGTT_X_XX_XX_XX_XX_XX_X

Input profile: EET_45_[ECU] GC-04-057-4-08

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._EET_45_[ECU] GC-04-058-4-09

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_45_[ECU] GC-04-058-4-09

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._EET_45_[ECU] GC-04-057-4-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._EET_45_[ECU] GC-04-057-4-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._EET_45_[ECU] GC-04-057-4-08

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._EET_45_[ECU] GC-03-017-2-06

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._EET_45_[ECU] GC-04-057-4-08

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

8._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

9._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 1
 Dapeng Zhang, 2016

10._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 2
 Dapeng Zhang, 2016

11._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 5
 Dapeng Zhang, 2016

12._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 7
 Dapeng Zhang, 2016

13._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 6
 Dapeng Zhang, 2016

14._EET_45_[ECU]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 8
 Dapeng Zhang, 2016

15._EET_45_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4408 8
 Dapeng Zhang, 2016

16._EET_45_[ECU]

95.8 %
36 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

17._EET_45_[ECU]

93.2 %
37 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 6 Row 33 34_36
 Dapeng Zhang, 2016

18._EET_45_[ECU]

78.2 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 3 > FP
 Dapeng Zhang, 2016

19._EET_45_[ECU] GC-03-017-2-06

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

20._EET_45_[ECU] GC-03-017-2-06

76.6 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

21._EET_45_[ECU]

73.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3206 2 > FP
 Dapeng Zhang, 2016

22._EET_45_[ECU] GC-04-058-4-09

59.2 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._EET_45_[ECU]

57.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4409 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154