SNP Profiles of "ICS 48"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-078-2-29
GGGGATAGCTCTACCTACGTCTATAGAC
2. _GC-05-120-3-22
GGGGATAGCTCTACCTACGTCTATAGAC
3. _5229_3
GG___AT_______________ACGTCT______AC
4. _5322_4
GG___AT_______________ACGTCT______AC
5. _GC-05-078-2-29
GGGGTTGGCCTTCCCCCCTTCCAAGGAA
6. _GC-05-120-3-22
GGGGATAGCTCTACCTACGTCTATAGAC
7. _5229_1_>_FP
GG___AT_______________ACGTCT______AC
8. _5229_2_>_FP
GG___TT_______________CCTTCC______AA
9. _GC-05-078-2-29
GGGGATAGCTCTACCTACGTCTATAGAC
10. _5229_4
GG___AT_______________ACGTCT______AC
11. _5322_2_>_FP
GG___AT_______________ACGTCT______AC
12. _GC-05-078-2-29
GGGGATAGCTCTACCTACGTCTATAGAC
13. _GC-05-120-3-22
GGGGATAGCTCTACCTACGTCTATAGAC
14. _5322_1
GG___AT_______________ACGTCT______AC
15. _GC-05-078-2-29
GGGGATAGCTCTACCTACGTCTATAGAC
16. _GC-05-120-3-22
GGGGATAGCTCTACCTACGTCTATAGAC
17. _5229_5
GG___AT_______________ACGTCT______AC
18. _5322_3_>_FP
GG___AT_______________ACGTCT______AC
19. _RUQ_146
GGCCATAGAGAGACAGACACAGATAGAC
20. _RUQ_146
_______________CTAC___ACGTCT___AGAC
21. _RUQ_146
GG___AT_______________ACGTCT______AC
22. _6B_E318_T6
GG___AT_______________ACGTCT______AC
23. _San_Juan_Block3
GG___AT_______________ACGTCT______AC
24. _ICS_48_Fld#_105_Plt#_2
GGACATAGGGAACCAGCCACAGTTGGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-078-2-29
CGAGGGCTATAGAGATCTAGGGATCGAG
2. _GC-05-120-3-22
CGAGGGCTATAGAGATCTAGGGATCGAG
3. _5229_3
CGAG___CT_________AT______GG______AG
4. _5322_4
CGAG___CT_________AT______GG______AG
5. _GC-05-078-2-29
CCAGGGCTATGGGGAATTGGGGATCCAA
6. _GC-05-120-3-22
CGAGGGCTATAGAGATCTAGGGATCGAG
7. _5229_1_>_FP
CGAG___CT_________AT______GG______AG
8. _5229_2_>_FP
CCAG___CT_________AA______GG______AA
9. _GC-05-078-2-29
CGAGGGCTATAGAGATCTAGGGATCGAG
10. _5229_4
CGAG___CT_________AT______GG______AG
11. _5322_2_>_FP
CGAG___CT_________AT______GG______AG
12. _GC-05-078-2-29
CGAGGGCTATAGAGATCTAGGGATCGAG
13. _GC-05-120-3-22
CGAGGGCTATAGAGATCTAGGGATCGAG
14. _5322_1
CGAG___CT_________AT______GG______AG
15. _GC-05-078-2-29
CGAGGGCTATAGAGATCTAGGGATCGAG
16. _GC-05-120-3-22
CGAGGGCTATAGAGATCTAGGGATCGAG
17. _5229_5
CGAG___CT_________AT______GG______AG
18. _5322_3_>_FP
CGAG___CT_________AT______GG______AG
19. _RUQ_146
CGAGGGAGATAGAGATAGAGGGATCG___
20. _RUQ_146
CGAG___CT___AGAGAT____________CGAG
21. _RUQ_146
CGAG___CT_________AT______GG______AG
22. _6B_E318_T6
___AG___CT_________AT______GG______AG
23. _San_Juan_Block3
GGAG___CT_________AT______GG______AG
24. _ICS_48_Fld#_105_Plt#_2
GGAAGGAGTTGGGGATAGAGGGATGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-078-2-29
___CCCCCTGGGTAACGACCCAGCT___AG
2. _GC-05-120-3-22
___CCCCCTGGGTAACGACCCAGCT___AG
3. _5229_3
______CCCT___GT___CGAC______CT______
4. _5322_4
______CCCT___GT___CGAC______CT______
5. _GC-05-078-2-29
___CCCCTTGGTTAACGCCTTAATTGGAA
6. _GC-05-120-3-22
___CCCCCTGGGTAACGACCCAGCT___AG
7. _5229_1_>_FP
______CCCT___GT___CGAC______CT______
8. _5229_2_>_FP
______CCTT___TT___CGCC______TTGG___
9. _GC-05-078-2-29
___CCCCCTGGGTAACGACCCAGCT___AG
10. _5229_4
______CCCT___GT___CGAC______CT______
11. _5322_2_>_FP
______CCCT___GT___CGAC______CT______
12. _GC-05-078-2-29
___CCCCCTGGGTAACGACCCAGCT___AG
13. _GC-05-120-3-22
___CCCCCTGGGTAACGACCCAGCTAGAG
14. _5322_1
______CCCT___GT___CGAC______CT______
15. _GC-05-078-2-29
___CCCCCTGGGT___CGACCCAGCT___AG
16. _GC-05-120-3-22
___CCCCCTGGGTAACGACCCAGCT___AG
17. _5229_5
______CCCT___GT___CGAC______CT______
18. _5322_3_>_FP
______CCCT___GT___CGAC______CTAG___
19. _RUQ_146
AGCCCC___GGACAACGACGG___AG___AA
20. _RUQ_146
______CCCT___GT___GGAACC___CT______
21. _RUQ_146
______CCCT___GT___CGAC______CTAG___
22. _6B_E318_T6
______CCCT___GT___CGAC______CTAG___
23. _San_Juan_Block3
______CCCT___GT___CGAC______CTAG___
24. _ICS_48_Fld#_105_Plt#_2
AGCCAC___AGACAGCCACAG___AA___AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-078-2-29
AGCCCTTTAGGTGGGTACGGAACGCGCC
2. _GC-05-120-3-22
AGCCCTTTAGGTGGGTACGGAACGCGCC
3. _5229_3
_________TT_____________________CG___CC
4. _5322_4
_________TT_____________________CG___CC
5. _GC-05-078-2-29
AATTCCGTGGTTTTTTCCGG___GGCCCC
6. _GC-05-120-3-22
AGCCCTTTAGGTGGGTACGGAACGCGCC
7. _5229_1_>_FP
_________TT_____________________CG___CC
8. _5229_2_>_FP
_________GT_____________________GG___CC
9. _GC-05-078-2-29
AGCCCTTTAGGTGGGTACGGAACGCGCC
10. _5229_4
_________TT_____________________CG___CC
11. _5322_2_>_FP
_________TT_____________________CG___CC
12. _GC-05-078-2-29
AGCCCTTTAGGTGGGTACGGAACGCGCC
13. _GC-05-120-3-22
AGCCCTTTAGGTGGGTACGGAACGCGCC
14. _5322_1
_________TT_____________________CG___CC
15. _GC-05-078-2-29
AGCCCTTTAGGTGGGTACGGAACGCGCC
16. _GC-05-120-3-22
AGCCCTTTAGGTGGGTACGGAACGCGCC
17. _5229_5
_________TT_____________________CG___CC
18. _5322_3_>_FP
_________TT_____________________CG___CC
19. _RUQ_146
AG______AAAGACCCACACCCAGCG___GG
20. _RUQ_146
______CCTTAG______GTAC______CGCGCC
21. _RUQ_146
_________TT_____________________CG___CC
22. _6B_E318_T6
_________TT_____________________CG___CC
23. _San_Juan_Block3
_________TT_____________________CG___CC
24. _ICS_48_Fld#_105_Plt#_2
AA______CCAGAAACAAACCGAGCC___GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-078-2-29
CCGGTTGGCTAACTAACCCTCCCTAAGT
2. _GC-05-120-3-22
CCGGTTGGCTAACTAACCCTCCCTAAGT
3. _5229_3
______TTGG___AACTAA_________CTAA___
4. _5322_4
______TTGG___AACTAA_________CTAA___
5. _GC-05-078-2-29
CCAGTTGGCCAATTAATTTTCCCCAAGG
6. _GC-05-120-3-22
CCGGTTGGCTAACTAACCCTCCCTAAGT
7. _5229_1_>_FP
______TTGG___AACTAA_________CTAA___
8. _5229_2_>_FP
______TTGG___AATTAA_________CCAA___
9. _GC-05-078-2-29
CCGGTTGGCTAACTAACCCTCCCTAAGT
10. _5229_4
______TTGG___AACTAA_________CTAA___
11. _5322_2_>_FP
______TTGG___AACTAA_________CTAA___
12. _GC-05-078-2-29
CCGGTTGGCTAACTAACCCTCCCTAAGT
13. _GC-05-120-3-22
CCGGTTGGCTAACTAACCCTCCCTAAGT
14. _5322_1
______TTGG___AACTAA_________CTAA___
15. _GC-05-078-2-29
CCGGTTGGCTAACTAACCCTCCCTAAGT
16. _GC-05-120-3-22
CCGGTTGGCTAACTAACCCTCCCTAAGT
17. _5229_5
______TTGG___AACTAA_________CTAA___
18. _5322_3_>_FP
______TTGG___AACTAA_________CTAA___
19. _RUQ_146
GGGGAAGGAGAAAGAA___AG___AGAAAC
20. _RUQ_146
___GG_______________AACC______CT___GT
21. _RUQ_146
______TTGG___AACTAA_________CTAA___
22. _6B_E318_T6
______TTGG___AACTAA_________CTAA___
23. _San_Juan_Block3
______TTCG___AACTAA_________CTAA___
24. _ICS_48_Fld#_105_Plt#_2
GGAAAGGGAGATAGAG___AA___GGAGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-078-2-29
AACCAGATCTTTTTCTGTCCGTCCTTAA
2. _GC-05-120-3-22
AACCAGATCTTTTTCTGTCCGTCCTTAA
3. _5229_3
AA_________CT______CT______GTCC___AA
4. _5322_4
AA_________CT______CT______GTCC___AA
5. _GC-05-078-2-29
AACCAGTTTTTTTTCCGGCCTTCCTTAA
6. _GC-05-120-3-22
AACCAGATCTTTTTCTGTCCGTCCTTAA
7. _5229_1_>_FP
AA_________CT______CT______GTCC___AA
8. _5229_2_>_FP
AA_________TT______CC______TTCC___AA
9. _GC-05-078-2-29
AACCAGATCTTTTTCTGTCCGTCCTTAA
10. _5229_4
AA_________CT______CT______GTCC___AA
11. _5322_2_>_FP
AA_________CT______CT______GTCC___AA
12. _GC-05-078-2-29
AACCAGATCTTTTTCTGTCCGTCCTTAA
13. _GC-05-120-3-22
AACCAGATCTTTTTCTGTCCGTCCTTAA
14. _5322_1
AA_________CT______CT______GTCC___AA
15. _GC-05-078-2-29
AACCAGATCTTTTTCTGTCCGTCCTTAA
16. _GC-05-120-3-22
AACCAGATCTTTTTCTGTCCGTCCTTAA
17. _5229_5
AA_________CT______CT______GTCC___AA
18. _5322_3_>_FP
AA_________CT______CT______GTCC___AA
19. _RUQ_146
AAGGAG______AAAA___AC___AAGGAGAA
20. _RUQ_146
______AGAT__________________GT___CT___
21. _RUQ_146
AA_________CT______CT______GTCC___AA
22. _6B_E318_T6
AT__________________CT______GTCC___AA
23. _San_Juan_Block3
AA_________CT______CT______GTCC___AA
24. _ICS_48_Fld#_105_Plt#_2
ATAGGG______AGAG___AC___ACAGAAAC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-05-078-2-29
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
2. _GC-05-120-3-22
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
3. _5229_3
___TT___CTCGAGCT_______________X_XX_X
4. _5322_4
___TT___CTCGAGCT_______________X_XX_X
5. _GC-05-078-2-29
GGTTTTCTGGAATTCCAAACAAAAX_XX_X
6. _GC-05-120-3-22
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
7. _5229_1_>_FP
___TT___CTCGAGCT_______________X_XX_X
8. _5229_2_>_FP
___TT___CTGGAATT_______________X_XX_X
9. _GC-05-078-2-29
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
10. _5229_4
___TT___CTCGAGCT_______________X_XX_X
11. _5322_2_>_FP
___TT___CTCGAGCT_______________X_XX_X
12. _GC-05-078-2-29
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
13. _GC-05-120-3-22
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
14. _5322_1
___TT___CTCGAGCT_______________X_XX_X
15. _GC-05-078-2-29
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
16. _GC-05-120-3-22
GGTTCTCTCGAGCTACAGACAGAAX_XX_X
17. _5229_5
___TT___CTCGAGCT_______________X_XX_X
18. _5322_3_>_FP
___TT___CTCGAGCT_______________X_XX_X
19. _RUQ_146
GGAAAGAGCCAGAGAC___ACAGAAX_XX_X
20. _RUQ_146
______CTCTCGAG__________________X_XX_X
21. _RUQ_146
___TT___CTCGAGCT_______________X_XX_X
22. _6B_E318_T6
___TT___CTGGAGCT_______________X_XX_X
23. _San_Juan_Block3
___TT___CTGGAGCT_______________X_XX_X
24. _ICS_48_Fld#_105_Plt#_2
GGAGAGAGCGAGAGAC___CCAGACX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_48 GC-05-078-2-29
Location: Tree: 4
Notes: 4
 Mars, 2018
2._ICS_48 GC-05-120-3-22
Location: Tree: 4
Notes: 4
 Mars, 2018
3._ICS_48
Location: 5229 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
4._ICS_48
Location: 5322 4
 Dapeng Zhang, 2016
5._ICS_48 GC-05-078-2-29
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
6._ICS_48 GC-05-120-3-22
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018
7._ICS_48
Location: 5229 1 > FP
 Dapeng Zhang, 2016
8._ICS_48
Location: 5229 2 > FP
 Dapeng Zhang, 2016
9._ICS_48 GC-05-078-2-29
Location: Tree: 5
Notes: 5
 Mars, 2018
10._ICS_48
Location: 5229 4
 Dapeng Zhang, 2016
11._ICS_48
Location: 5322 2 > FP
 Dapeng Zhang, 2016
12._ICS_48 GC-05-078-2-29
Location: Tree: 3
Notes: 3
 Mars, 2018
13._ICS_48 GC-05-120-3-22
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018
14._ICS_48
Location: 5322 1
 Dapeng Zhang, 2016
15._ICS_48 GC-05-078-2-29
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
16._ICS_48 GC-05-120-3-22
Location: Tree: 1
Notes: 1
 Mars, 2018
17._ICS_48
Location: 5229 5
 Dapeng Zhang, 2016
18._ICS_48
Location: 5322 3 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._ICS_48 RUQ 146
Notes: Reading_Collection
 Mars, 2018
20._ICS_48 RUQ 146
 Dapeng Zhang, 2014
21._ICS_48 RUQ 146
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

22._ICS_48
Location: 6B E318 T6
 Dapeng Zhang, 2016
23._ICS_48
Location: San Juan Block3
 Dapeng Zhang, 2016

USDA-TARS United States of America

24._ICS_48 ICS 48_Fld#_105_Plt#_2
Location: Field: 105, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133