SNP Profiles of ICS-48   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAAATTCCGGGGCCCCCCCCGGTTCCCC
1._ICS_48
AAAATTCC____CCCCGG_CC_
2._ICS_48
ATAACTAC____CTCTGG_CC_
3._ICS_48
AAAACTAC____CTCTGG_CC_
4._ICS_48
AAAACTAC____CTCTGG_CC_
5._ICS_48
AAAACTAC____CTCTGG_CC_
6._ICS_48
AAAACTAC____CTCTGG_CC_
7._ICS_48
AAAACTAC____CTCTGG_CC_
8._ICS_48
AAAACTAC____CTCTGG_CC_
9._ICS_48
AAAACTAC____CTCTGG_CC_
10._ICS_48
AAAACTAC____CTCTGG_CC_
11._RUQ_146
AAAACTAC____CTCTGG_CC_
12._ICS_48
AAAACTAC____CTCTGG_CC_
13._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
14._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
15._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
16._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
17._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
18._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
19._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
20._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
21._RUQ_146
___AC__CC_______
22._RUQ_146
__CTAA__CC_CT__CTCC_
23._RUQ_146
AAAA_ACAGAG_GGAG_GGAGGGAG
24._ICS_48_Fld#_105_Plt#_2
ATAC_ACAGAG_AGGG_GGAAGGAG
 1516171819202122232425262728
_Input profile
ATCCAAGGCCGGTTAATTGGTTAACCGG
1._ICS_48
__AA__GG____TTAA_GG
2._ICS_48
__AA__GG____ATAT_CG
3._ICS_48
__AA__GG____ATAT_CG
4._ICS_48
__AA__GG____ATAT_CG
5._ICS_48
__AA__GG____ATAT_CG
6._ICS_48
__AA__GG____ATAT_CG
7._ICS_48
__AA__GG____ATAT_CG
8._ICS_48
__AA__GG____ATAT_CG
9._ICS_48
__AA__GG____ATAT_CG
10._ICS_48
__AA__GG____ATAT_CG
11._RUQ_146
__AA__GG____ATAT_CG
12._ICS_48
__AA__CG____ATAT_CG
13._GC-05-078-2-29
ATCCAAGGCGGGCTAGTTAGATATCGCG
14._GC-05-078-2-29
ATCCAAGGCGGGCTAGTTAGATATCGCG
15._GC-05-078-2-29
ATCCAAGGCGGGCTAGTTAGATATCGCG
16._GC-05-120-3-22
ATCCAAGGCGGGCTAGTTAGATATCGCG
17._GC-05-120-3-22
ATCCAAGGCGGGCTAGTTAGATATCGCG
18._GC-05-120-3-22
ATCCAAGGCGGGCTAGTTAGATATCGCG
19._GC-05-120-3-22
ATCCAAGGCGGGCTAGTTAGATATCGCG
20._GC-05-078-2-29
ATCCAAGGCGGGCTAGTTAGATATCGCG
21._RUQ_146
__AATT_________CG
22._RUQ_146
____CG____AG_ATCGCG
23._RUQ_146
ATCCAACC_GGAGAAAAAGATATCGCG
24._ICS_48_Fld#_105_Plt#_2
TTCCAGCG_GGAGAGAGGGATATGGCC
 2930313233343536373839404142
_Input profile
AATTGGAGCGCCAATTGGTTAATTAACC
1._ICS_48
AA___CG_AATT__AA___
2._ICS_48
AA___CG_AAGT__AG___
3._ICS_48
AA___CG_AAGT__AG___
4._ICS_48
AA___CG_AAGT__AG___
5._ICS_48
AA___CG_AAGT__AG___
6._ICS_48
AA___CG_AAGT__AG___
7._ICS_48
AA___CG_AAGT__AG___
8._ICS_48
AA___CG_AAGT__AG___
9._ICS_48
AA___CG_AAGT__AG___
10._ICS_48
AA___CG_AAGT__AG___
11._RUQ_146
AA___CG_AAGT__AG___
12._ICS_48
AA___CG_AAGT__AG___
13._GC-05-078-2-29
AACTGTAGCGACAAGTGGGTAGCCAACC
14._GC-05-078-2-29
AACTGTAGCGACAAGTGGGTAGCCAACC
15._GC-05-078-2-29
AACTGTAGCGACAAGTGGGTAGCCAACC
16._GC-05-120-3-22
AACTGTAGCGACAAGTGGGTAGCCAACC
17._GC-05-120-3-22
AACTGTAGCGACAAGTGGGTAGCCAACC
18._GC-05-120-3-22
AACTGTAGCGACAAGTGGGTAGCCAACC
19._GC-05-120-3-22
AACTGTAGCGACAAGTGGGTAGCCAACC
20._GC-05-078-2-29
AACTGTAGCGACAAGTGGGTAGCC_CC
21._RUQ_146
____CG_AA____CC__
22._RUQ_146
___AGGGACAAGT__AGCC__
23._RUQ_146
AAAGACAGCGACAAACCCACAGGGAAGG
24._ICS_48_Fld#_105_Plt#_2
ATAAACGGCCCCAGACACAAAGAGAGGG
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._ICS_48
__CC_________CCTT
2._ICS_48
__CC_________CTCT
3._ICS_48
__CC_________CTCT
4._ICS_48
__CC_________CTCT
5._ICS_48
__CC_________CTCT
6._ICS_48
__CC_________CTCT
7._ICS_48
__CC_________CTCT
8._ICS_48
__CC_________CTCT
9._ICS_48
__CC_________CTCT
10._ICS_48
__CC_________CTCT
11._RUQ_146
__CC_________CTCT
12._ICS_48
__CC_________CTCT
13._GC-05-078-2-29
GTATCCAGAGAGCTCCGGGGGGTTCTCT
14._GC-05-078-2-29
GTATCCAGAGAGCTCCGGGGGGTTCTCT
15._GC-05-078-2-29
GTATCCAGAGAGCTCCGGGGGGTTCTCT
16._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
17._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
18._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
19._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
20._GC-05-078-2-29
GTATCCAGAGAGCTCCGGGGGGTTCTCT
21._RUQ_146
____AG_________
22._RUQ_146
GTAT__AG______CTCT_
23._RUQ_146
AC_GG_AGAGAG_GGGGCCAGAGAG
24._ICS_48_Fld#_105_Plt#_2
CC_AG_GGAAAG_GGAGACAAAGAG
 5758596061626364656667686970
_Input profile
TTAGCCTTCTAAGGGGCCAGTTGTGGTT
1._ICS_48
__CC_CTAAGG_CCAGTTGT__
2._ICS_48
____CTACGG_ACAGGTTT__
3._ICS_48
__CG_CTACGG_ACAGGTTT__
4._ICS_48
__CG_CTACGG_ACAGGTTT__
5._ICS_48
__CG_CTACGG_ACAGGTTT__
6._ICS_48
__CG_CTACGG_ACAGGTTT__
7._ICS_48
__CG_CTACGG_ACAGGTTT__
8._ICS_48
__CG_CTACGG_ACAGGTTT__
9._ICS_48
__CG_CTACGG_ACAGGTTT__
10._ICS_48
__CG_CTACGG_ACAGGTTT__
11._RUQ_146
__CG_CTACGG_ACAGGTTT__
12._ICS_48
__GG_CTACGG_ACAGGTTT__
13._GC-05-078-2-29
GTGGCGCTCTACGGAGACAGGTTTAGCC
14._GC-05-078-2-29
GTGGCGCTCTACGGAGACAGGTTTAGCC
15._GC-05-078-2-29
GTGGCGCTCTACGGAGACAGGTTTAGCC
16._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
17._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
18._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
19._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
20._GC-05-078-2-29
GTGGCGCTCTACGGAGACAGGTTTAGCC
21._RUQ_146
_GG______ACAG_TTAG_
22._RUQ_146
GTGGCGCTCTAC_AGACAGGTTTAG_
23._RUQ_146
ACGGCGAGAGACGGAGACAGACAAAG_
24._ICS_48_Fld#_105_Plt#_2
AAAAGGAGAGACGGGGCCAAACCCAG_
 7172737475767778798081828384
_Input profile
CCGGTTACAACCAAAACCGGCCATCCTT
1._ICS_48
_GGTT_____CCGG___TT
2._ICS_48
_AGTT_____CCGG___CT
3._ICS_48
__TT_____CCCG___CT
4._ICS_48
__TT_____CCCG___CT
5._ICS_48
__TT_____CCCG___CT
6._ICS_48
__TT_____CCCG___CT
7._ICS_48
__TT_____CCCG___CT
8._ICS_48
__TT_____CCCG___CT
9._ICS_48
__TT_____CCCG___CT
10._ICS_48
_AGTT_____CCCG___CT
11._RUQ_146
_AGTT_____CCCG___CT
12._ICS_48
_AGTT_____CCGG___CT
13._GC-05-078-2-29
CC_TTACAGACAAAGCCCGCTATACCT
14._GC-05-078-2-29
CC_TTACAGACAAAGCCCGCTATACCT
15._GC-05-078-2-29
CC_TTACAGACAAAGCCCGCTATACCT
16._GC-05-120-3-22
CC_TTACAGACAAAGCCCGCTATACCT
17._GC-05-120-3-22
CC_TTACAGACAAAGCCCGCTATACCT
18._GC-05-120-3-22
CC_TTACAGACAAAGCCCGCTATACCT
19._GC-05-120-3-22
CCAGTTACAGACAAAGCCCGCTATACCT
20._GC-05-078-2-29
CC_TTACAGACAAAGCCCGCTATACCT
21._RUQ_146
_AG______CCCG__AC_
22._RUQ_146
________CCCG__ACCT
23._RUQ_146
__AAACAGACAA_CCCCAGATACAG
24._ICS_48_Fld#_105_Plt#_2
__AGCCAGACAC_ACCGGGATACAA
 85868788899091929394    
_Input profile
TTTTTTAATTCTTTTTAAGGX_XX_XX_XX_X
1._ICS_48
TTTT_AA_CTTTTT__X_XX_XX_XX_X
2._ICS_48
CT__AG_CTGTTT__X_XX_XX_XX_X
3._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
4._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
5._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
6._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
7._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
8._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
9._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
10._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
11._RUQ_146
CTCT_AG_CTGTTT__X_XX_XX_XX_X
12._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
13._GC-05-078-2-29
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
14._GC-05-078-2-29
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
15._GC-05-078-2-29
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
16._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
17._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
18._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
19._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
20._GC-05-078-2-29
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
21._RUQ_146
_CT__CC_GT___X_XX_XX_XX_X
22._RUQ_146
___AGCCCTGT___X_XX_XX_XX_X
23._RUQ_146
AG_AA__AGAAAAATGGX_XX_XX_XX_X
24._ICS_48_Fld#_105_Plt#_2
AG_AG__AGACAGTTGGX_XX_XX_XX_X

Input profile: ICS_48 GC-05-078-2-29

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

1._ICS_48

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 2 > FP
 Dapeng Zhang, 2016

2._ICS_48

72.4 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

3._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 4
 Dapeng Zhang, 2016

4._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 5
 Dapeng Zhang, 2016

6._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 1 > FP
 Dapeng Zhang, 2016

7._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 1
 Dapeng Zhang, 2016

8._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 4
 Dapeng Zhang, 2016

9._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 2 > FP
 Dapeng Zhang, 2016

10._ICS_48

71.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 3 > FP
 Dapeng Zhang, 2016

11._ICS_48 RUQ_146

71.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._ICS_48

70 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

13._ICS_48 GC-05-078-2-29

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._ICS_48 GC-05-078-2-29

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._ICS_48 GC-05-078-2-29

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

16._ICS_48 GC-05-120-3-22

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

17._ICS_48 GC-05-120-3-22

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._ICS_48 GC-05-120-3-22

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

19._ICS_48 GC-05-120-3-22

67 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

20._ICS_48 GC-05-078-2-29

66.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

21._ICS_48 RUQ_146

57.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._ICS_48 RUQ_146

55.8 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._ICS_48 RUQ_146

41.3 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._ICS_48 ICS_48_Fld#_105_Plt#_2

34.4 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 105, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240