SNP Profiles of ICS-48   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
6._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
7._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
8._ICS_48
AAAACTAC____CTCTGG_CC_
9._ICS_48
AAAACTAC____CTCTGG_CC_
10._ICS_48
AAAACTAC____CTCTGG_CC_
11._ICS_48
AAAACTAC____CTCTGG_CC_
12._ICS_48
AAAACTAC____CTCTGG_CC_
13._ICS_48
AAAACTAC____CTCTGG_CC_
14._ICS_48
AAAACTAC____CTCTGG_CC_
15._ICS_48
AAAACTAC____CTCTGG_CC_
16._RUQ_146
AAAACTAC____CTCTGG_CC_
17._ICS_48
ATAACTAC____CTCTGG_CC_
18._ICS_48
AAAACTAC____CTCTGG_CC_
19._RUQ_146
__CTAA__CC_CT__CTCC_
20._RUQ_146
___AC__CC_______
21._ICS_48
AAAATTCC____CCCCGG_CC_
22._GC-05-078-2-29
AAAATTCCGGGGCCCCCCCCGGTTCCCC
23._RUQ_146
AAAA_ACAGAG_GGAG_GGAGGGAG
24._ICS_48_Fld#_105_Plt#_2
ATAC_ACAGAG_AGGG_GGAAGGAG
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._GC-05-078-2-29
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._GC-05-078-2-29
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._GC-05-078-2-29
ATCCAAAAGGCGGGCTAGTTAGATATCG
8._ICS_48
___AA__GG____ATAT_
9._ICS_48
___AA__GG____ATAT_
10._ICS_48
___AA__GG____ATAT_
11._ICS_48
___AA__GG____ATAT_
12._ICS_48
___AA__GG____ATAT_
13._ICS_48
___AA__GG____ATAT_
14._ICS_48
___AA__GG____ATAT_
15._ICS_48
___AA__GG____ATAT_
16._RUQ_146
___AA__GG____ATAT_
17._ICS_48
___AA__GG____ATAT_
18._ICS_48
___AA__CG____ATAT_
19._RUQ_146
_____CG____AG_ATCG
20._RUQ_146
___AATT_________
21._ICS_48
___AA__GG____TTAA_
22._GC-05-078-2-29
ATCC_AAGGCCGGTTAATTGGTTAACC
23._RUQ_146
ATCCAGAACC_GGAGAAAAAGATATCG
24._ICS_48_Fld#_105_Plt#_2
TTCCAGAGCG_GGAGAGAGGGATATGG
 2930313233343536373839404142
_Input profile
CGAACTGTAGCGACAAGTGGGTAGCCAA
1._GC-05-078-2-29
CGAACTGTAGCGACAAGTGGGTAGCCAA
2._GC-05-078-2-29
CGAACTGTAGCGACAAGTGGGTAGCCAA
3._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCAA
4._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCAA
5._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCAA
6._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCAA
7._GC-05-078-2-29
CGAACTGTAGCGACAAGTGGGTAGCC_
8._ICS_48
CGAA___CG_AAGT__AG__
9._ICS_48
CGAA___CG_AAGT__AG__
10._ICS_48
CGAA___CG_AAGT__AG__
11._ICS_48
CGAA___CG_AAGT__AG__
12._ICS_48
CGAA___CG_AAGT__AG__
13._ICS_48
CGAA___CG_AAGT__AG__
14._ICS_48
CGAA___CG_AAGT__AG__
15._ICS_48
CGAA___CG_AAGT__AG__
16._RUQ_146
CGAA___CG_AAGT__AG__
17._ICS_48
CGAA___CG_AAGT__AG__
18._ICS_48
CGAA___CG_AAGT__AG__
19._RUQ_146
CG___AGGGACAAGT__AGCC_
20._RUQ_146
CG____CG_AA____CC_
21._ICS_48
GGAA___CG_AATT__AA__
22._GC-05-078-2-29
GGAATTGGAGCGCCAATTGGTTAATTAA
23._RUQ_146
CGAAAGACAGCGACAAACCCACAGGGAA
24._ICS_48_Fld#_105_Plt#_2
CCATAAACGGCCCCAGACACAAAGAGAG
 4344454647484950515253545556
_Input profile
CCGTATCCAGAGAGCTCCGGGGGGTTCT
1._GC-05-078-2-29
CCGTATCCAGAGAGCTCCGGGGGGTTCT
2._GC-05-078-2-29
CCGTATCCAGAGAGCTCCGGGGGGTTCT
3._GC-05-120-3-22
CCGTATCCAGAGAGCTCCGGGGGGTTCT
4._GC-05-120-3-22
CCGTATCCAGAGAGCTCCGGGGGGTTCT
5._GC-05-120-3-22
CCGTATCCAGAGAGCTCCGGGGGGTTCT
6._GC-05-120-3-22
CCGTATCCAGAGAGCTCCGGGGGGTTCT
7._GC-05-078-2-29
CCGTATCCAGAGAGCTCCGGGGGGTTCT
8._ICS_48
___CC_________CT
9._ICS_48
___CC_________CT
10._ICS_48
___CC_________CT
11._ICS_48
___CC_________CT
12._ICS_48
___CC_________CT
13._ICS_48
___CC_________CT
14._ICS_48
___CC_________CT
15._ICS_48
___CC_________CT
16._RUQ_146
___CC_________CT
17._ICS_48
___CC_________CT
18._ICS_48
___CC_________CT
19._RUQ_146
_GTAT__AG______CTCT
20._RUQ_146
_____AG________
21._ICS_48
___CC_________CC
22._GC-05-078-2-29
CCGGTTCCAAGGAACCCCGGGGTTTTCC
23._RUQ_146
GGAC_GG_AGAGAG_GGGGCCAGAG
24._ICS_48_Fld#_105_Plt#_2
GGCC_AG_GGAAAG_GGAGACAAAG
 5758596061626364656667686970
_Input profile
CTGTGGCGCTCTACGGAGACAGGTTTAG
1._GC-05-078-2-29
CTGTGGCGCTCTACGGAGACAGGTTTAG
2._GC-05-078-2-29
CTGTGGCGCTCTACGGAGACAGGTTTAG
3._GC-05-120-3-22
CTGTGGCGCTCTACGGAGACAGGTTTAG
4._GC-05-120-3-22
CTGTGGCGCTCTACGGAGACAGGTTTAG
5._GC-05-120-3-22
CTGTGGCGCTCTACGGAGACAGGTTTAG
6._GC-05-120-3-22
CTGTGGCGCTCTACGGAGACAGGTTTAG
7._GC-05-078-2-29
CTGTGGCGCTCTACGGAGACAGGTTTAG
8._ICS_48
CT__CG_CTACGG_ACAGGTTT_
9._ICS_48
CT__CG_CTACGG_ACAGGTTT_
10._ICS_48
CT__CG_CTACGG_ACAGGTTT_
11._ICS_48
CT__CG_CTACGG_ACAGGTTT_
12._ICS_48
CT__CG_CTACGG_ACAGGTTT_
13._ICS_48
CT__CG_CTACGG_ACAGGTTT_
14._ICS_48
CT__CG_CTACGG_ACAGGTTT_
15._ICS_48
CT__CG_CTACGG_ACAGGTTT_
16._RUQ_146
CT__CG_CTACGG_ACAGGTTT_
17._ICS_48
CT____CTACGG_ACAGGTTT_
18._ICS_48
CT__GG_CTACGG_ACAGGTTT_
19._RUQ_146
_GTGGCGCTCTAC_AGACAGGTTTAG
20._RUQ_146
__GG______ACAG_TTAG
21._ICS_48
TT__CC_CTAAGG_CCAGTTGT_
22._GC-05-078-2-29
TTTTAGCCTTCTAAGGGGCCAGTTGTGG
23._RUQ_146
AGACGGCGAGAGACGGAGACAGACAAAG
24._ICS_48_Fld#_105_Plt#_2
AGAAAAGGAGAGACGGGGCCAAACCCAG
 7172737475767778798081828384
_Input profile
CCCCTTACAGACAAAGCCCGCTATACCT
1._GC-05-078-2-29
CCCCTTACAGACAAAGCCCGCTATACCT
2._GC-05-078-2-29
CCCCTTACAGACAAAGCCCGCTATACCT
3._GC-05-120-3-22
CCCCTTACAGACAAAGCCCGCTATACCT
4._GC-05-120-3-22
CCCCTTACAGACAAAGCCCGCTATACCT
5._GC-05-120-3-22
CCCCTTACAGACAAAGCCCGCTATACCT
6._GC-05-120-3-22
CCCCTTACAGACAAAGCCCGCTATACCT
7._GC-05-078-2-29
CCCCTTACAGACAAAGCCCGCTATACCT
8._ICS_48
__TT_____CCCG___CT
9._ICS_48
__TT_____CCCG___CT
10._ICS_48
__TT_____CCCG___CT
11._ICS_48
__TT_____CCCG___CT
12._ICS_48
__TT_____CCCG___CT
13._ICS_48
__TT_____CCCG___CT
14._ICS_48
__TT_____CCCG___CT
15._ICS_48
__TT_____CCCG___CT
16._RUQ_146
__TT_____CCCG___CT
17._ICS_48
__TT_____CCGG___CT
18._ICS_48
__TT_____CCGG___CT
19._RUQ_146
________CCCG__ACCT
20._RUQ_146
________CCCG__AC_
21._ICS_48
__TT_____CCGG___TT
22._GC-05-078-2-29
TTCCTTACAACCAAAACCGGCCATCCTT
23._RUQ_146
__AAACAGACAA_CCCCAGATACAG
24._ICS_48_Fld#_105_Plt#_2
__AGCCAGACAC_ACCGGGATACAA
 85868788899091929394    
_Input profile
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
1._GC-05-078-2-29
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
2._GC-05-078-2-29
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
3._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
4._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
5._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
6._GC-05-120-3-22
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
7._GC-05-078-2-29
CTCTTTAGCCCTGTTTATGGX_XX_XX_XX_X
8._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
9._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
10._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
11._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
12._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
13._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
14._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
15._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
16._RUQ_146
CTCT_AG_CTGTTT__X_XX_XX_XX_X
17._ICS_48
CT__AG_CTGTTT__X_XX_XX_XX_X
18._ICS_48
CTCT_AG_CTGTTT__X_XX_XX_XX_X
19._RUQ_146
___AGCCCTGT___X_XX_XX_XX_X
20._RUQ_146
_CT__CC_GT___X_XX_XX_XX_X
21._ICS_48
TTTT_AA_CTTTTT__X_XX_XX_XX_X
22._GC-05-078-2-29
TTTTTTAATTCTTTTTAAGGX_XX_XX_XX_X
23._RUQ_146
AG_AA__AGAAAAATGGX_XX_XX_XX_X
24._ICS_48_Fld#_105_Plt#_2
AG_AG__AGACAGTTGGX_XX_XX_XX_X

Input profile: ICS_48 GC-05-078-2-29

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._ICS_48 GC-05-078-2-29

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._ICS_48 GC-05-078-2-29

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._ICS_48 GC-05-120-3-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_48 GC-05-120-3-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._ICS_48 GC-05-120-3-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

6._ICS_48 GC-05-120-3-22

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

7._ICS_48 GC-05-078-2-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 4
 Dapeng Zhang, 2016

9._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 5
 Dapeng Zhang, 2016

11._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 1 > FP
 Dapeng Zhang, 2016

12._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 1
 Dapeng Zhang, 2016

13._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 4
 Dapeng Zhang, 2016

14._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 2 > FP
 Dapeng Zhang, 2016

15._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 3 > FP
 Dapeng Zhang, 2016

16._ICS_48 RUQ_146

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_48

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

18._ICS_48

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

19._ICS_48 RUQ_146

95.3 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._ICS_48 RUQ_146

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 2 > FP
 Dapeng Zhang, 2016

22._ICS_48 GC-05-078-2-29

67.2 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._ICS_48 RUQ_146

54.9 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._ICS_48 ICS_48_Fld#_105_Plt#_2

40.7 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 105, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240