SNP Profiles of ICS-48   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._GC-05-078-2-29
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
5._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
6._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
7._GC-05-120-3-22
AAAACTACAGAGCTCCCTCTGGCTCCCT
8._ICS_48
AAAACTAC____CTCTGG_CC_
9._ICS_48
AAAACTAC____CTCTGG_CC_
10._ICS_48
AAAACTAC____CTCTGG_CC_
11._ICS_48
AAAACTAC____CTCTGG_CC_
12._ICS_48
AAAACTAC____CTCTGG_CC_
13._ICS_48
AAAACTAC____CTCTGG_CC_
14._ICS_48
AAAACTAC____CTCTGG_CC_
15._ICS_48
AAAACTAC____CTCTGG_CC_
16._RUQ_146
AAAACTAC____CTCTGG_CC_
17._ICS_48
ATAACTAC____CTCTGG_CC_
18._ICS_48
AAAACTAC____CTCTGG_CC_
19._RUQ_146
__CTAA__CC_CT__CTCC_
20._RUQ_146
___AC__CC_______
21._ICS_48
AAAATTCC____CCCCGG_CC_
22._GC-05-078-2-29
AAAATTCCGGGGCCCCCCCCGGTTCCCC
23._RUQ_146
AAAA_ACAGAG_GGAG_GGAGGGAG
24._ICS_48_Fld#_105_Plt#_2
ATAC_ACAGAG_AGGG_GGAAGGAG
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._GC-05-078-2-29
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._GC-05-078-2-29
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._GC-05-078-2-29
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
7._GC-05-120-3-22
ATCCAAAAGGCGGGCTAGTTAGATATCG
8._ICS_48
___AA__GG____ATAT_
9._ICS_48
___AA__GG____ATAT_
10._ICS_48
___AA__GG____ATAT_
11._ICS_48
___AA__GG____ATAT_
12._ICS_48
___AA__GG____ATAT_
13._ICS_48
___AA__GG____ATAT_
14._ICS_48
___AA__GG____ATAT_
15._ICS_48
___AA__GG____ATAT_
16._RUQ_146
___AA__GG____ATAT_
17._ICS_48
___AA__GG____ATAT_
18._ICS_48
___AA__CG____ATAT_
19._RUQ_146
_____CG____AG_ATCG
20._RUQ_146
___AATT_________
21._ICS_48
___AA__GG____TTAA_
22._GC-05-078-2-29
ATCC_AAGGCCGGTTAATTGGTTAACC
23._RUQ_146
ATCCAGAACC_GGAGAAAAAGATATCG
24._ICS_48_Fld#_105_Plt#_2
TTCCAGAGCG_GGAGAGAGGGATATGG
 2930313233343536373839404142
_Input profile
CGAACTGTAGCGACAAGTGGGTAGCCCC
1._GC-05-078-2-29
CGAACTGTAGCGACAAGTGGGTAGCCCC
2._GC-05-078-2-29
CGAACTGTAGCGACAAGTGGGTAGCCCC
3._GC-05-078-2-29
CGAACTGTAGCGACAAGTGGGTAGCCCC
4._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCCC
5._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCCC
6._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCCC
7._GC-05-120-3-22
CGAACTGTAGCGACAAGTGGGTAGCCCC
8._ICS_48
CGAA___CG_AAGT__AG__
9._ICS_48
CGAA___CG_AAGT__AG__
10._ICS_48
CGAA___CG_AAGT__AG__
11._ICS_48
CGAA___CG_AAGT__AG__
12._ICS_48
CGAA___CG_AAGT__AG__
13._ICS_48
CGAA___CG_AAGT__AG__
14._ICS_48
CGAA___CG_AAGT__AG__
15._ICS_48
CGAA___CG_AAGT__AG__
16._RUQ_146
CGAA___CG_AAGT__AG__
17._ICS_48
CGAA___CG_AAGT__AG__
18._ICS_48
CGAA___CG_AAGT__AG__
19._RUQ_146
CG___AGGGACAAGT__AGCC_
20._RUQ_146
CG____CG_AA____CC_
21._ICS_48
GGAA___CG_AATT__AA__
22._GC-05-078-2-29
GGAATTGGAGCGCCAATTGGTTAATTCC
23._RUQ_146
CGAAAGACAGCGACAAACCCACAGGGGG
24._ICS_48_Fld#_105_Plt#_2
CCATAAACGGCCCCAGACACAAAGAGGG
 4344454647484950515253545556
_Input profile
GTATCCAGAGAGCTCCGGGGGGTTCTCT
1._GC-05-078-2-29
GTATCCAGAGAGCTCCGGGGGGTTCTCT
2._GC-05-078-2-29
GTATCCAGAGAGCTCCGGGGGGTTCTCT
3._GC-05-078-2-29
GTATCCAGAGAGCTCCGGGGGGTTCTCT
4._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
5._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
6._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
7._GC-05-120-3-22
GTATCCAGAGAGCTCCGGGGGGTTCTCT
8._ICS_48
__CC_________CTCT
9._ICS_48
__CC_________CTCT
10._ICS_48
__CC_________CTCT
11._ICS_48
__CC_________CTCT
12._ICS_48
__CC_________CTCT
13._ICS_48
__CC_________CTCT
14._ICS_48
__CC_________CTCT
15._ICS_48
__CC_________CTCT
16._RUQ_146
__CC_________CTCT
17._ICS_48
__CC_________CTCT
18._ICS_48
__CC_________CTCT
19._RUQ_146
GTAT__AG______CTCT_
20._RUQ_146
____AG_________
21._ICS_48
__CC_________CCTT
22._GC-05-078-2-29
GGTTCCAAGGAACCCCGGGGTTTTCCTT
23._RUQ_146
AC_GG_AGAGAG_GGGGCCAGAGAG
24._ICS_48_Fld#_105_Plt#_2
CC_AG_GGAAAG_GGAGACAAAGAG
 5758596061626364656667686970
_Input profile
GTGGCGCTCTACGGAGACAGGTTTAGCC
1._GC-05-078-2-29
GTGGCGCTCTACGGAGACAGGTTTAGCC
2._GC-05-078-2-29
GTGGCGCTCTACGGAGACAGGTTTAGCC
3._GC-05-078-2-29
GTGGCGCTCTACGGAGACAGGTTTAGCC
4._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
5._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
6._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
7._GC-05-120-3-22
GTGGCGCTCTACGGAGACAGGTTTAGCC
8._ICS_48
__CG_CTACGG_ACAGGTTT__
9._ICS_48
__CG_CTACGG_ACAGGTTT__
10._ICS_48
__CG_CTACGG_ACAGGTTT__
11._ICS_48
__CG_CTACGG_ACAGGTTT__
12._ICS_48
__CG_CTACGG_ACAGGTTT__
13._ICS_48
__CG_CTACGG_ACAGGTTT__
14._ICS_48
__CG_CTACGG_ACAGGTTT__
15._ICS_48
__CG_CTACGG_ACAGGTTT__
16._RUQ_146
__CG_CTACGG_ACAGGTTT__
17._ICS_48
____CTACGG_ACAGGTTT__
18._ICS_48
__GG_CTACGG_ACAGGTTT__
19._RUQ_146
GTGGCGCTCTAC_AGACAGGTTTAG_
20._RUQ_146
_GG______ACAG_TTAG_
21._ICS_48
__CC_CTAAGG_CCAGTTGT__
22._GC-05-078-2-29
TTAGCCTTCTAAGGGGCCAGTTGTGGTT
23._RUQ_146
ACGGCGAGAGACGGAGACAGACAAAG_
24._ICS_48_Fld#_105_Plt#_2
AAAAGGAGAGACGGGGCCAAACCCAG_
 7172737475767778798081828384
_Input profile
CCTTACAGACAAAGCCCGCTATACCTCT
1._GC-05-078-2-29
CCTTACAGACAAAGCCCGCTATACCTCT
2._GC-05-078-2-29
CCTTACAGACAAAGCCCGCTATACCTCT
3._GC-05-078-2-29
CCTTACAGACAAAGCCCGCTATACCTCT
4._GC-05-120-3-22
CCTTACAGACAAAGCCCGCTATACCTCT
5._GC-05-120-3-22
CCTTACAGACAAAGCCCGCTATACCTCT
6._GC-05-120-3-22
CCTTACAGACAAAGCCCGCTATACCTCT
7._GC-05-120-3-22
CCTTACAGACAAAGCCCGCTATACCTCT
8._ICS_48
_TT_____CCCG___CTCT
9._ICS_48
_TT_____CCCG___CTCT
10._ICS_48
_TT_____CCCG___CTCT
11._ICS_48
_TT_____CCCG___CTCT
12._ICS_48
_TT_____CCCG___CTCT
13._ICS_48
_TT_____CCCG___CTCT
14._ICS_48
_TT_____CCCG___CTCT
15._ICS_48
_TT_____CCCG___CTCT
16._RUQ_146
_TT_____CCCG___CTCT
17._ICS_48
_TT_____CCGG___CTCT
18._ICS_48
_TT_____CCGG___CTCT
19._RUQ_146
_______CCCG__ACCT_
20._RUQ_146
_______CCCG__AC__
21._ICS_48
_TT_____CCGG___TTTT
22._GC-05-078-2-29
CCTTACAACCAAAACCGGCCATCCTTTT
23._RUQ_146
_AAACAGACAA_CCCCAGATACAGAG
24._ICS_48_Fld#_105_Plt#_2
_AGCCAGACAC_ACCGGGATACAAAG
 858687888990919293     
_Input profile
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
1._GC-05-078-2-29
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
2._GC-05-078-2-29
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
3._GC-05-078-2-29
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
4._GC-05-120-3-22
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
5._GC-05-120-3-22
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
6._GC-05-120-3-22
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
7._GC-05-120-3-22
CTTTAGCCCTGTTTATGGX_XX_XX_XX_XX_X
8._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
9._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
10._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
11._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
12._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
13._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
14._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
15._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
16._RUQ_146
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
17._ICS_48
__AG_CTGTTT__X_XX_XX_XX_XX_X
18._ICS_48
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
19._RUQ_146
__AGCCCTGT___X_XX_XX_XX_XX_X
20._RUQ_146
CT__CC_GT___X_XX_XX_XX_XX_X
21._ICS_48
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
22._GC-05-078-2-29
TTTTAATTCTTTTTAAGGX_XX_XX_XX_XX_X
23._RUQ_146
_AA__AGAAAAATGGX_XX_XX_XX_XX_X
24._ICS_48_Fld#_105_Plt#_2
_AG__AGACAGTTGGX_XX_XX_XX_XX_X

Input profile: ICS_48 GC-05-078-2-29

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._ICS_48 GC-05-078-2-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._ICS_48 GC-05-078-2-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._ICS_48 GC-05-078-2-29

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._ICS_48 GC-05-120-3-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._ICS_48 GC-05-120-3-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._ICS_48 GC-05-120-3-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

7._ICS_48 GC-05-120-3-22

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

8._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 4
 Dapeng Zhang, 2016

9._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 5
 Dapeng Zhang, 2016

11._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 1 > FP
 Dapeng Zhang, 2016

12._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 1
 Dapeng Zhang, 2016

13._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 4
 Dapeng Zhang, 2016

14._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 2 > FP
 Dapeng Zhang, 2016

15._ICS_48

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5322 3 > FP
 Dapeng Zhang, 2016

16._ICS_48 RUQ_146

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_48

97.3 %
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E318 T6
 Dapeng Zhang, 2016

18._ICS_48

96.2 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

19._ICS_48 RUQ_146

95.3 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

20._ICS_48 RUQ_146

92.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._ICS_48

71.8 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5229 2 > FP
 Dapeng Zhang, 2016

22._ICS_48 GC-05-078-2-29

66.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

23._ICS_48 RUQ_146

54.4 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

24._ICS_48 ICS_48_Fld#_105_Plt#_2

40.6 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 105, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240