SNP Profiles of "EET 400 [ECU]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-066-4-02
GGGGTTGGCCTTCCTTAAGGCCTTGGAA
2. _GC-01-066-4-02
GGGGTTGGCCTTCCTTAAGGCCTTGGAA
3. _GC-01-066-4-02
GGGGATAGCCCTCCTTACGTCTTTAGCC
4. _GC-01-066-4-02
GGGGTTGGCCTTCCTTAAGGCTTTGGAA
5. _GC-01-066-4-02
GGGGTTGGCCTTCCTTAAGGCCTTGGAA
6. _GC-01-066-4-02
GGGGATAGCCCTCCTTACGTCTTTAGCC
7. _GC-01-066-4-02
GGGGTTGGCCTTCCTTAAGG___TTGGAA
8. _GC-01-066-4-02
GGGGATAGCCCTCCTTACGTCTTTAGCC
9. _1402_3
GG___AT_______________ACGTCT______CC
10. _1402_9
GG___AT_______________ACGTCT______CC
11. _1402_13_>_F
GG___AT_______________ACGTCT______CC
12. _1402_2
GG___TT_______________AAGGCC______AA
13. _1402_5
GG___TT_______________AAGGCT______AA
14. _1402_7
GG___TT_______________AAGGCC______AA
15. _1402_1_>_FP
GG___TT_______________AAGGCC______AA
16. _1402_10_>_F
GG___TT_______________AAGG_________AA
17. _Cabiria
GG___AT_______________ACGTCT______CC
18. _OCHO_CASAS_#1
GG___AT_______________ACGTCT______CC
19. _RUQ_760
_______________CTCC___ACGTCT___-CC
20. _RUQ_760
GG___AT_______________ACGTCT______CC
21. _Plot85/Trial_II_2B
GG___AT_______________ACGGCT______AC
22. _MITC-000396
CGCCATAAGGAGACAACCAAAAATGGCC
23. _EET_400_[ECU]_Fld#_153_Plt#_2
CGCCAAAGGGAGACAGACACAAATGGCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-066-4-02
CCGGGGCCAAGGGGAATTGGGGAACCAA
2. _GC-01-066-4-02
CCGGGGCCAAGGGGAATTGGGGAACCAA
3. _GC-01-066-4-02
CCAGGGCTATAGGGAACCGGGGATCGAG
4. _GC-01-066-4-02
CCGGGGCCAAGGGGAATTGGGGAACCAA
5. _GC-01-066-4-02
CCGGGGCCAAGGGGAATTGGGGAACCAA
6. _GC-01-066-4-02
CCAGGGCTATAGGGAACCGGGGATCGAG
7. _GC-01-066-4-02
CCGGGGCCAAGGGGAATTGGGGAACCAA
8. _GC-01-066-4-02
CCAGGGCTATAGGGAACCGGGGATCGAG
9. _1402_3
CCAG___CT_________AA______GG______AG
10. _1402_9
CCAG___CT_________AA______GG______AG
11. _1402_13_>_F
CCAG___CT_________AA______GG______AG
12. _1402_2
CCGG___CC_________AA______GG______AA
13. _1402_5
CCGG___CC_________AA______GG______AA
14. _1402_7
CCGG___CC_________AA______GG______AA
15. _1402_1_>_FP
CCGG___CC_________AA______GG______AA
16. _1402_10_>_F
CCGG___CC_________AA______GG______AA
17. _Cabiria
___AG___CC_________AA______GG______AG
18. _OCHO_CASAS_#1
CCAG___CT_________AA______GG______AG
19. _RUQ_760
CCAG___CT___AGGGAA____________CCAG
20. _RUQ_760
CCAG___CT_________AA______GG______AG
21. _Plot85/Trial_II_2B
CCAA___CC_________AA______GG______AA
22. _MITC-000396
GGAGGGAGATAAGGAAGGAGAGATCG___
23. _EET_400_[ECU]_Fld#_153_Plt#_2
GGAGGGAGATGGGGAAGGAGAGATCC___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-066-4-02
___AACCCCAATTGGGGAACCAACCAAAA
2. _GC-01-066-4-02
___AACCCCAATTGGGGAACCAACCAAAA
3. _GC-01-066-4-02
___AAACCTGGGGGGGGACCCAGCTAAAA
4. _GC-01-066-4-02
___AACCCCAATTGGGGAACCAACCAAAA
5. _GC-01-066-4-02
___AACCCCAATTGGGGAACCAACCAAAA
6. _GC-01-066-4-02
___AAACCTGGGGGGGGACCCAGCTAAAA
7. _GC-01-066-4-02
___AACCCCAATTGGGGAACCAACCAAAA
8. _GC-01-066-4-02
___AAACCTGGGGGGGGACCCAGCTAAAA
9. _1402_3
______ACCT___GG___GGAC______CTAA___
10. _1402_9
______ACCT___GG___GGAC______CTAA___
11. _1402_13_>_F
______ACCT___GG___GGAC______CTAA___
12. _1402_2
______CCCC___TT___GGAA______CCAA___
13. _1402_5
______CCCC___TT___GGAA______CCAA___
14. _1402_7
______CCCC___TT___GGAA______CCAA___
15. _1402_1_>_FP
______CCCC___TT___GGAA______CCAA___
16. _1402_10_>_F
______CCCC___TT___GGAA______CCAA___
17. _Cabiria
______ACCT___GG___GGAC______CTAA___
18. _OCHO_CASAS_#1
______ACCT___GG___GGAC______CTAA___
19. _RUQ_760
______ACCT___GG___CGACCC___CT______
20. _RUQ_760
______ACCT___GG___GGAC______CTAA___
21. _Plot85/Trial_II_2B
______ACCC___TT___GGCC______TTAA___
22. _MITC-000396
AAAAAC___AGCCGGCGACGG___AA___AA
23. _EET_400_[ECU]_Fld#_153_Plt#_2
AAACAC___AGCCGGCGACGG___AG___AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-066-4-02
AATTCCGGGGTTGGTTCCGG___CGCCTT
2. _GC-01-066-4-02
AATTCCGGGGTTGGTTCCGG___CGCCTT
3. _GC-01-066-4-02
AATTCTGGAGTTGTTTACCG___CGCGCT
4. _GC-01-066-4-02
AATTCCGGGGTTGGTTCCGG___CGCCTT
5. _GC-01-066-4-02
AATTCCGGGGTTGGTTCCGG___CGCCTT
6. _GC-01-066-4-02
AATTCTGGAGTTGTTTACCG___CGCGCT
7. _GC-01-066-4-02
AATTCCGGGGTTGGTTCCGG___CGCCTT
8. _GC-01-066-4-02
AATTCTGGAGTTGTTTACCG___CGCGCT
9. _1402_3
_________GG_____________________CG___CT
10. _1402_9
_________GG_____________________CG___CT
11. _1402_13_>_F
_________GG_____________________CG___CT
12. _1402_2
_________GG_____________________CG___TT
13. _1402_5
_________GG_____________________CG___TT
14. _1402_7
_________GG_____________________CG___TT
15. _1402_1_>_FP
_________GG_____________________CG___TT
16. _1402_10_>_F
_________GG_____________________CG___TT
17. _Cabiria
_________GG_____________________CG___CT
18. _OCHO_CASAS_#1
_________GG_____________________CG___CT
19. _RUQ_760
______TTGGAG______TTAC______CGCCTT
20. _RUQ_760
_________GG_____________________CG___CT
21. _Plot85/Trial_II_2B
_________GG_____________________GG___CC
22. _MITC-000396
AA______CCAGAACCAACCGGAGCC___AG
23. _EET_400_[ECU]_Fld#_153_Plt#_2
AG______ACAAAACCAACCGGAGGG___AG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-066-4-02
CCGGTTGGCCAATTGGCCTTCCCCGGGG
2. _GC-01-066-4-02
CCGGTTGGCCAATTGGCCTTCCCCGGGG
3. _GC-01-066-4-02
CCGGCTCGCCAATTAACCTTCCCCGGGG
4. _GC-01-066-4-02
CCGGTTGGCCAATTGGCCTTCCCCGGGG
5. _GC-01-066-4-02
CCGGTTGGCCAATTGGCCTTCCCCGGGG
6. _GC-01-066-4-02
CCGGCTCGCCAATTAACCTTCCCCGGGG
7. _GC-01-066-4-02
CCGGTTGGCCAATTGGCCTTCCCCGGGG
8. _GC-01-066-4-02
CCGGCTCGCCAATTAACCTTCCCCGGGG
9. _1402_3
______CTCG___AATTAA_________CCGG___
10. _1402_9
______CTCG___AATTAA_________CCGG___
11. _1402_13_>_F
______CTCG___AATTAA_________CCGG___
12. _1402_2
______TTGG___AATTGG_________CCGG___
13. _1402_5
______TTGG___AATTGG_________CCGG___
14. _1402_7
______TTGG___AATTGG_________CCGG___
15. _1402_1_>_FP
______TTGG___AATTGG_________CCGG___
16. _1402_10_>_F
______TTGG___AATTGG_________CCGG___
17. _Cabiria
______CTCG___AATTAA_________CCGG___
18. _OCHO_CASAS_#1
______CTCG___AATTAA_________CCGG___
19. _RUQ_760
___-_______________AACC______CC___GG
20. _RUQ_760
______CTCG___AATTAG_________CCGG___
21. _Plot85/Trial_II_2B
______TTCG___AACTAG_________CCGG___
22. _MITC-000396
GGGGGGCCGGATAAAA___AA___GGGGCC
23. _EET_400_[ECU]_Fld#_153_Plt#_2
GGGGAGGGAGATAGAA___AA___GGGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-066-4-02
AACCGGTTCCTTTTCCGGCCTTTTTT___
2. _GC-01-066-4-02
AACCGGTTCCTTTTCCGGCCTTTTTT___
3. _GC-01-066-4-02
AACCGGTTCCTTTTCTGTACGTTT___AA
4. _GC-01-066-4-02
AACCGGTTCCTTTTCCGGCCTTTTTT___
5. _GC-01-066-4-02
AACCGGTTCCTTTTCCGGCCTTTTTT___
6. _GC-01-066-4-02
AACCGGTTCCTTTTCTGTACGTTT___AA
7. _GC-01-066-4-02
AACCGGTTCCTTTTCCGGCCTTTTTT___
8. _GC-01-066-4-02
AACCGGTTCCTTTTCTGTACGTTT___AA
9. _1402_3
AA_________CC______CT______GTTT___AA
10. _1402_9
AA_________CC______CT______GTTT___AA
11. _1402_13_>_F
AA_________CC______CT______GTTT___AA
12. _1402_2
AA_________CC______CC______TTTT______
13. _1402_5
AA_________CC______CC______TTTT______
14. _1402_7
AA_________CC______CC______TTTT______
15. _1402_1_>_FP
AA_________CC______CC______TTTT______
16. _1402_10_>_F
AA_________CC______CC______TTTT______
17. _Cabiria
_____________________CT______GTTT___AC
18. _OCHO_CASAS_#1
AA_________CC______CT______GTTT___AC
19. _RUQ_760
______GGTT__________________GT___CC___
20. _RUQ_760
AA_________CC______CT______GTTT___AC
21. _Plot85/Trial_II_2B
AA_________CC______CC______TTTT___CC
22. _MITC-000396
AAGGAG______AGAG___AC___ACAGGGAA
23. _EET_400_[ECU]_Fld#_153_Plt#_2
AAAGAG______AAAG___AA___ACAAGGCC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-01-066-4-02
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
2. _GC-01-066-4-02
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
3. _GC-01-066-4-02
GGCTCCTTCCAGCCACAGACAGCCX_XX_X
4. _GC-01-066-4-02
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
5. _GC-01-066-4-02
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
6. _GC-01-066-4-02
GGCTCCTTCCAGCCACAGACAGCCX_XX_X
7. _GC-01-066-4-02
GGTTCCTTGGAACCCCAAAAAACCX_XX_X
8. _GC-01-066-4-02
GGCTCCTTCCAGCCACAGACAGCCX_XX_X
9. _1402_3
___CT___TTCCAGCC_______________X_XX_X
10. _1402_9
___CT___TTCCAGCC_______________X_XX_X
11. _1402_13_>_F
___CT___TTCCAGCC_______________X_XX_X
12. _1402_2
___TT___TTGGAACC_______________X_XX_X
13. _1402_5
___TT___TTGGAACC_______________X_XX_X
14. _1402_7
___TT___TTGGAACC_______________X_XX_X
15. _1402_1_>_FP
___TT___TTGGAACC_______________X_XX_X
16. _1402_10_>_F
___TT___TTGGAACC_______________X_XX_X
17. _Cabiria
_________TTCCAG__________________X_XX_X
18. _OCHO_CASAS_#1
___CT___TTCCAGCC_______________X_XX_X
19. _RUQ_760
______CCTTCCAG__________________X_XX_X
20. _RUQ_760
___CT___TTCCAGCC_______________X_XX_X
21. _Plot85/Trial_II_2B
___TT___CCGGAGCC_______________X_XX_X
22. _MITC-000396
AGAGGGAGCGAAGGAC___CCGGACX_XX_X
23. _EET_400_[ECU]_Fld#_153_Plt#_2
GGAGGGAGCGAAGGAC___ACAGACX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 2
Notes: 2
 Mars, 2018
3._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 3
Notes: 3
 Mars, 2018
4._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 5
Notes: 5
 Mars, 2018
5._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 7
Notes: 7
 Mars, 2018
6._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 9
Notes: 9
 Mars, 2018
7._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018
8._EET_400_[ECU] GC-01-066-4-02
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018
9._EET_400_[ECU]
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
10._EET_400_[ECU]
Location: 1402 9
 Dapeng Zhang, 2016
11._EET_400_[ECU]
Location: 1402 13 > F
 Dapeng Zhang, 2016
12._EET_400_[ECU]
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
13._EET_400_[ECU]
Location: 1402 5
 Dapeng Zhang, 2016
14._EET_400_[ECU]
Location: 1402 7
 Dapeng Zhang, 2016
15._EET_400_[ECU]
Location: 1402 1 > FP
 Dapeng Zhang, 2016
16._EET_400_[ECU]
Location: 1402 10 > F
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

17._EET_400_[ECU]
Location: Cabiria
 Dapeng Zhang, 2016

Estation Experimental Tropical Pichilingue Ecuador

18._EET_400_[ECU]
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._EET_400_[ECU] RUQ 760
 Dapeng Zhang, 2014
20._EET_400_[ECU] RUQ 760
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

21._EET_400_[ECU]
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

USDA-SHRS United States of America

22._EET_400_[ECU] MITC-000396
 Mars, 2018

USDA-TARS United States of America

23._EET_400_[ECU] EET 400 [ECU]_Fld#_153_Plt#_2
Location: Field: 153, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133