SNP Profiles of EET-400   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTACAGGGCTCCCCCTGGCTCTTT
1._GC-01-066-4-02
AAAACTACAGGGCTCCCCCTGGCTCTTT
2._GC-01-066-4-02
AAAACTACAGGGCTCCCCCTGGCTCTTT
3._EET_400_[ECU]
AAAACTAC____CCCTGG_CT_
4._EET_400_[ECU]
AAAACTAC____CCCTGG_CT_
5._EET_400_[ECU]
AAAACTAC____CCCTGG_CT_
6._EET_400_[ECU]
AAACCTAC____CCCTGG_CT_
7._RUQ_760
AAACCTAC____CCCTGG_CT_
8._EET_400_[ECU]
_ACCTAC____CCCTGG_CT_
9._RUQ_760
__CTAC__TT_CC__CTTT_
10._GC-01-066-4-02
AA_CCAAGGGGCCCCCCCCGGTTTTTT
11._GC-01-066-4-02
AA_CCAAGGGGCCCCCCCCGGTTTTTT
12._GC-01-066-4-02
AA_CCAAGGGGCCCCCCCCGGTTTTTT
13._GC-01-066-4-02
AA_CCAAGGGGCCCCCCCCGGTTTTTT
14._GC-01-066-4-02
AA_CCAAGGGGCCCCCCCCGGTTTTTT
15._EET_400_[ECU]
AACCCCCC____CCCCGG_CC_
16._EET_400_[ECU]
AA_CCAA____CCCCGG_TT_
17._EET_400_[ECU]
AA_CCAA____CCCCGG_TT_
18._EET_400_[ECU]
AA_CCAA____CCCCGG_TT_
19._EET_400_[ECU]
AA_CCAA____CCCCGG_TT_
20._EET_400_[ECU]
AA_CCAA____CCCCGG_TT_
21._MITC-000396
AAAA_ACAAAG_GGGG_AGAGAGAA
22._EET_400_[ECU]_Fld#_153_Plt#_2
AACC_ACAGAG_AGGG_AGAGAGAG
 1516171819202122232425262728
_Input profile
ATAAGGCGCGCGCCAATTAGATAACGCG
1._GC-01-066-4-02
ATAAGGCGCGCGCCAATTAGATAACGCG
2._GC-01-066-4-02
ATAAGGCGCGCGCCAATTAGATAACGCG
3._EET_400_[ECU]
__GG__CG____ATAA_CG
4._EET_400_[ECU]
__GG__CG____ATAA_CG
5._EET_400_[ECU]
__GG__CG____ATAA_CG
6._EET_400_[ECU]
__GG__CG____ATAA_CG
7._RUQ_760
__GG__CG____ATAA_CG
8._EET_400_[ECU]
__GG__CG____ATAA_CG
9._RUQ_760
____CC____-_AACCCG
10._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
11._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
12._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
13._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
14._GC-01-066-4-02
AAAAGGGGCCGGTTAATTGGTTAACCCG
15._EET_400_[ECU]
__GG__CG____ATAA_GG
16._EET_400_[ECU]
__GG__GG____TTAA_CG
17._EET_400_[ECU]
__GG__GG____TTAA_CG
18._EET_400_[ECU]
__GG__GG____TTAA_CG
19._EET_400_[ECU]
__GG__GG____TTAA_CG
20._EET_400_[ECU]
__GG__GG____TTAA_CG
21._MITC-000396
ATAAGGGG_CCGGAAAGGGATAACGCC
22._EET_400_[ECU]_Fld#_153_Plt#_2
ATACGGGG_GGGGAAAAGGAAAACCGG
 2930313233343536373839404142
_Input profile
AATTGTGGGGCCAAGTGGTTAGCCGGCC
1._GC-01-066-4-02
AATTGTGGGGCCAAGTGGTTAGCCGGCC
2._GC-01-066-4-02
AATTGTGGGGCCAAGTGGTTAGCCGGCC
3._EET_400_[ECU]
AA___GG_AAGT__AG___
4._EET_400_[ECU]
AA___GG_AAGT__AG___
5._EET_400_[ECU]
AA___GG_AAGT__AG___
6._EET_400_[ECU]
AA___GG_AAGT__AG___
7._RUQ_760
AA___GG_AGGT__AG___
8._EET_400_[ECU]
AA___GG_AAGT__AG___
9._RUQ_760
___GGCGCCAAGT__AGCC__
10._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
11._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
12._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
13._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
14._GC-01-066-4-02
AATTGGGGGGCCGGGGGGTTAACCGGCC
15._EET_400_[ECU]
AA___GG_AGGG__AG___
16._EET_400_[ECU]
AA___GG_GGGG__AA___
17._EET_400_[ECU]
AA___GG_GGGG__AA___
18._EET_400_[ECU]
AA___GG_GGGG__AA___
19._EET_400_[ECU]
AA___GG_GGGG__AA___
20._EET_400_[ECU]
AA___GG_GGGG__AA___
21._MITC-000396
ATAAACAGCGACAAAACCAAAAGGGGGG
22._EET_400_[ECU]_Fld#_153_Plt#_2
ATAAAAAGCGACAAACCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTAGAGAACCACGGGGGTCTCCTT
1._GC-01-066-4-02
GGTTTTAGAGAACCACGGGGGTCTCCTT
2._GC-01-066-4-02
GGTTTTAGAGAACCACGGGGGTCTCCTT
3._EET_400_[ECU]
__TT________CTCC_
4._EET_400_[ECU]
__TT________CTCC_
5._EET_400_[ECU]
__TT________CTCC_
6._EET_400_[ECU]
__TT________CTCC_
7._RUQ_760
__TT________CTCC_
8._EET_400_[ECU]
__TT________CT__
9._RUQ_760
GGTT__AG______CT_TT
10._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCTCCTT
11._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGG_CCTT
12._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCCCCTT
13._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCCCCTT
14._GC-01-066-4-02
GGTTTTAAGGAACCCCGGAAGGCCCCTT
15._EET_400_[ECU]
__TT________CTCC_
16._EET_400_[ECU]
__TT________CTCC_
17._EET_400_[ECU]
__TT_________CC_
18._EET_400_[ECU]
__TT________CCCC_
19._EET_400_[ECU]
__TT________CCCC_
20._EET_400_[ECU]
__TT________CCCC_
21._MITC-000396
CC_AG_AAAAGG_AGAGCCAAGGAA
22._EET_400_[ECU]_Fld#_153_Plt#_2
CC_AA_GGAGAG_GGAGCCAAGGAA
 5758596061626364656667686970
_Input profile
GGCCCCTTCCGGGGACAGGGGGAGTTCC
1._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
2._GC-01-066-4-02
GGCCCCTTCCGGGGACAGGGGGAGTTCC
3._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
4._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
5._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
6._EET_400_[ECU]
_CC_TTCCGG_ACAGGGGG___
7._RUQ_760
_CC_TTCCGG_ACAGGGGG___
8._EET_400_[ECU]
___TTCCGG_ACAGGGGG___
9._RUQ_760
-CCCCTTCC_GGACAGGGGGAG__
10._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
11._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
12._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
13._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
14._GC-01-066-4-02
GGCCCCTTAAGGGGAAGGTTGGGGTTCC
15._EET_400_[ECU]
_CC_CCACGG_ACAATTGG___
16._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
17._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
18._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
19._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
20._EET_400_[ECU]
_CC_TTAAGG_AAGGTTGG___
21._MITC-000396
GGGGGGAGCCCGGGCCAGCCCCAG__
22._EET_400_[ECU]_Fld#_153_Plt#_2
GGGGGGAGCCCGGGACAGCCACAA__
 7172737475767778798081828384
_Input profile
AACTACAGACCCAGACCCCCATACCTTT
1._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
2._GC-01-066-4-02
AACTACAGACCCAGACCCCCATACCTTT
3._EET_400_[ECU]
AACT_____ACCC___CTTT
4._EET_400_[ECU]
AACT_____ACCC___CTTT
5._EET_400_[ECU]
AACT_____ACCC___CTTT
6._EET_400_[ECU]
AACT_____ACCC___CTTT
7._RUQ_760
AACT_____ACCC___CTTT
8._EET_400_[ECU]
AACT_____ACCC___CTTT
9._RUQ_760
_______ACCC__ACCT_
10._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
11._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
12._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
13._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
14._GC-01-066-4-02
AATTAAAACCCCAACCGGCCAACCCCTT
15._EET_400_[ECU]
AATT_____ACGG___TTCT
16._EET_400_[ECU]
AATT_____CCGG___CCTT
17._EET_400_[ECU]
AATT_____CCGG___CCTT
18._EET_400_[ECU]
AATT_____CCGG___CCTT
19._EET_400_[ECU]
AATT_____CCGG___CCTT
20._EET_400_[ECU]
AATT_____CCGG___CCTT
21._MITC-000396
_GGCCGGACAC_ACCGGGATCCAAAA
22._EET_400_[ECU]_Fld#_153_Plt#_2
_AGACAGACAC_ACCGGGATCCAGAG
 858687888990919293     
_Input profile
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
1._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
2._GC-01-066-4-02
CCTTAGCCCTGTCTTTGGX_XX_XX_XX_XX_X
3._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
4._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
5._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
6._EET_400_[ECU]
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
7._RUQ_760
CC_AG_CTGTCT__X_XX_XX_XX_XX_X
8._EET_400_[ECU]
__AG_CCGT___X_XX_XX_XX_XX_X
9._RUQ_760
__AGCCCTGT___X_XX_XX_XX_XX_X
10._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
11._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
12._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
13._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
14._GC-01-066-4-02
CCTTAACCCCTTTTTTGGX_XX_XX_XX_XX_X
15._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
16._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
17._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
18._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
19._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
20._EET_400_[ECU]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
21._MITC-000396
_AG__AGACAGATGGX_XX_XX_XX_XX_X
22._EET_400_[ECU]_Fld#_153_Plt#_2
_AG__AGACAGATGGX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

4._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._EET_400_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

6._EET_400_[ECU]

98.8 %
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

7._EET_400_[ECU] RUQ_760

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

8._EET_400_[ECU]

97.1 %
35 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

9._EET_400_[ECU] RUQ_760

93.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._EET_400_[ECU] GC-01-066-4-02

73.4 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

11._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._EET_400_[ECU] GC-01-066-4-02

72.8 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

15._EET_400_[ECU]

70 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

16._EET_400_[ECU]

67.9 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

19._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

20._EET_400_[ECU]

66.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

21._EET_400_[ECU] MITC-000396

42.4 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

41.1 %
79 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240