SNP Profiles of EET-400   View Data

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 Key

 1234567891011121314
_Input profile
AACCAAGGGGCCCCCCCCGGTTTTTTAA
1._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
2._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
3._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
4._GC-01-066-4-02
AACCAAGGGGCCCCCCCCGGTTTTTTAA
5._EET_400_[ECU]
AACCAA____CCCCGG_TT__
6._EET_400_[ECU]
AACCAA____CCCCGG_TT__
7._EET_400_[ECU]
AACCAA____CCCCGG_TT__
8._EET_400_[ECU]
AACCAA____CCCCGG_TT__
9._EET_400_[ECU]
AACCAA____CCCCGG_TT__
10._EET_400_[ECU]
AACCCC____CCCCGG_CC__
11._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
12._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
13._GC-01-066-4-02
AACTACAGGGCTCCCCCTGGCTCTTTAT
14._RUQ_760
AACTAC____CCCTGG_CT__
15._EET_400_[ECU]
AACTAC____CCCTGG_CT__
16._EET_400_[ECU]
AACTAC____CCCTGG_CT__
17._EET_400_[ECU]
AACTAC____CCCTGG_CT__
18._EET_400_[ECU]
AACTAC____CCCTGG_CT__
19._EET_400_[ECU]
_CTAC____CCCTGG_CT__
20._RUQ_760
_CTAC__TT_CC__CTTT__
21._EET_400_[ECU]_Fld#_153_Plt#_2
AA_ACAGAG_AGGG_AGAGAGAGAT
22._MITC-000396
AA_ACAAAG_GGGG_AGAGAGAAAT
 1516171819202122232425262728
_Input profile
AAGGGGCCGGTTAATTGGTTAACCCGAA
1._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
2._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
3._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
4._GC-01-066-4-02
AAGGGGCCGGTTAATTGGTTAACCCGAA
5._EET_400_[ECU]
_GG__GG____TTAA_CGAA
6._EET_400_[ECU]
_GG__GG____TTAA_CGAA
7._EET_400_[ECU]
_GG__GG____TTAA_CGAA
8._EET_400_[ECU]
_GG__GG____TTAA_CGAA
9._EET_400_[ECU]
_GG__GG____TTAA_CGAA
10._EET_400_[ECU]
_GG__CG____ATAA_GGAA
11._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
12._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
13._GC-01-066-4-02
AAGGCGCGCGCCAATTAGATAACGCGAA
14._RUQ_760
_GG__CG____ATAA_CGAA
15._EET_400_[ECU]
_GG__CG____ATAA_CGAA
16._EET_400_[ECU]
_GG__CG____ATAA_CGAA
17._EET_400_[ECU]
_GG__CG____ATAA_CGAA
18._EET_400_[ECU]
_GG__CG____ATAA_CGAA
19._EET_400_[ECU]
_GG__CG____ATAA_CGAA
20._RUQ_760
___CC____-_AACCCG_
21._EET_400_[ECU]_Fld#_153_Plt#_2
ACGGGG_GGGGAAAAGGAAAACCGGAT
22._MITC-000396
AAGGGG_CCGGAAAGGGATAACGCCAT
 2930313233343536373839404142
_Input profile
TTGGGGGGCCGGGGGGTTAACCGGCCGG
1._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
2._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
3._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
4._GC-01-066-4-02
TTGGGGGGCCGGGGGGTTAACCGGCCGG
5._EET_400_[ECU]
___GG_GGGG__AA____
6._EET_400_[ECU]
___GG_GGGG__AA____
7._EET_400_[ECU]
___GG_GGGG__AA____
8._EET_400_[ECU]
___GG_GGGG__AA____
9._EET_400_[ECU]
___GG_GGGG__AA____
10._EET_400_[ECU]
___GG_AGGG__AG____
11._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
12._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
13._GC-01-066-4-02
TTGTGGGGCCAAGTGGTTAGCCGGCCGG
14._RUQ_760
___GG_AGGT__AG____
15._EET_400_[ECU]
___GG_AAGT__AG____
16._EET_400_[ECU]
___GG_AAGT__AG____
17._EET_400_[ECU]
___GG_AAGT__AG____
18._EET_400_[ECU]
___GG_AAGT__AG____
19._EET_400_[ECU]
___GG_AAGT__AG____
20._RUQ_760
__GGCGCCAAGT__AGCC__GG
21._EET_400_[ECU]_Fld#_153_Plt#_2
AAAAAGCGACAAACCCAAAAGGGGGGCC
22._MITC-000396
AAACAGCGACAAAACCAAAAGGGGGGCC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAAGGTTCCTTGG
1._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
2._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
3._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
4._GC-01-066-4-02
TTTTAAGGAACCCCGGAAGGTTCCTTGG
5._EET_400_[ECU]
_TT_________CC__
6._EET_400_[ECU]
_TT_________CC__
7._EET_400_[ECU]
_TT_________CC__
8._EET_400_[ECU]
_TT_________CC__
9._EET_400_[ECU]
_TT_________CC__
10._EET_400_[ECU]
_TT_________CC__
11._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT_CCTTGG
12._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT_CCTTGG
13._GC-01-066-4-02
TTTTAGAGAACCACGGGGGT_CCTTGG
14._RUQ_760
_TT_________CC__
15._EET_400_[ECU]
_TT_________CC__
16._EET_400_[ECU]
_TT_________CC__
17._EET_400_[ECU]
_TT_________CC__
18._EET_400_[ECU]
_TT_________CC__
19._EET_400_[ECU]
_TT____________
20._RUQ_760
TT__AG______CC_TT-
21._EET_400_[ECU]_Fld#_153_Plt#_2
_AA_GGAGAG_GGAGCCGGGGAAGG
22._MITC-000396
_AG_AAAAGG_AGAGCCGGGGAAGG
 5758596061626364656667686970
_Input profile
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
1._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
2._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
3._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
4._GC-01-066-4-02
CCCCTTAAGGGGAAGGTTGGGGTTCCAA
5._EET_400_[ECU]
CC_TTAAGG_AAGGTTGG___AA
6._EET_400_[ECU]
CC_TTAAGG_AAGGTTGG___AA
7._EET_400_[ECU]
CC_TTAAGG_AAGGTTGG___AA
8._EET_400_[ECU]
CC_TTAAGG_AAGGTTGG___AA
9._EET_400_[ECU]
CC_TTAAGG_AAGGTTGG___AA
10._EET_400_[ECU]
CC_CCACGG_ACAATTGG___AA
11._GC-01-066-4-02
CCCCTTCCGGGGACAGGGGGAGTTCCAA
12._GC-01-066-4-02
CCCCTTCCGGGGACAGGGGGAGTTCCAA
13._GC-01-066-4-02
CCCCTTCCGGGGACAGGGGGAGTTCCAA
14._RUQ_760
CC_TTCCGG_ACAGGGGG___AA
15._EET_400_[ECU]
CC_TTCCGG_ACAGGGGG___AA
16._EET_400_[ECU]
CC_TTCCGG_ACAGGGGG___AA
17._EET_400_[ECU]
CC_TTCCGG_ACAGGGGG___AA
18._EET_400_[ECU]
CC_TTCCGG_ACAGGGGG___AA
19._EET_400_[ECU]
__TTCCGG_ACAGGGGG___AA
20._RUQ_760
CCCCTTCC_GGACAGGGGGAG___
21._EET_400_[ECU]_Fld#_153_Plt#_2
GGGGAGCCCGGGACAGCCACAA___
22._MITC-000396
GGGGAGCCCGGGCCAGCCCCAG___
 7172737475767778798081828384
_Input profile
TTAAAACCCCAACCGGCCAACCCCTTCC
1._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
2._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
3._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
4._GC-01-066-4-02
TTAAAACCCCAACCGGCCAACCCCTTCC
5._EET_400_[ECU]
TT_____CCGG___CCTTCC
6._EET_400_[ECU]
TT_____CCGG___CCTTCC
7._EET_400_[ECU]
TT_____CCGG___CCTTCC
8._EET_400_[ECU]
TT_____CCGG___CCTTCC
9._EET_400_[ECU]
TT_____CCGG___CCTTCC
10._EET_400_[ECU]
TT_____ACGG___TTCTCC
11._GC-01-066-4-02
CTACAGACCCAGACCCCCATACCTTTCC
12._GC-01-066-4-02
CTACAGACCCAGACCCCCATACCTTTCC
13._GC-01-066-4-02
CTACAGACCCAGACCCCCATACCTTTCC
14._RUQ_760
CT_____ACCC___CTTTCC
15._EET_400_[ECU]
CT_____ACCC___CTTTCC
16._EET_400_[ECU]
CT_____ACCC___CTTTCC
17._EET_400_[ECU]
CT_____ACCC___CTTTCC
18._EET_400_[ECU]
CT_____ACCC___CTTTCC
19._EET_400_[ECU]
CT_____ACCC___CTTT_
20._RUQ_760
______ACCC__ACCT__
21._EET_400_[ECU]_Fld#_153_Plt#_2
AGACAGACAC_ACCGGGATCCAGAG_
22._MITC-000396
GGCCGGACAC_ACCGGGATCCAAAA_
 8586878889909192      
_Input profile
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
1._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
2._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
3._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
4._GC-01-066-4-02
TTAACCCCTTTTTTGGX_XX_XX_XX_XX_XX_X
5._EET_400_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
6._EET_400_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
7._EET_400_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
8._EET_400_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
9._EET_400_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
10._EET_400_[ECU]
_AA_CCTTTT__X_XX_XX_XX_XX_XX_X
11._GC-01-066-4-02
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
12._GC-01-066-4-02
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
13._GC-01-066-4-02
TTAGCCCTGTCTTTGGX_XX_XX_XX_XX_XX_X
14._RUQ_760
_AG_CTGTCT__X_XX_XX_XX_XX_XX_X
15._EET_400_[ECU]
_AG_CTGTCT__X_XX_XX_XX_XX_XX_X
16._EET_400_[ECU]
_AG_CTGTCT__X_XX_XX_XX_XX_XX_X
17._EET_400_[ECU]
_AG_CTGTCT__X_XX_XX_XX_XX_XX_X
18._EET_400_[ECU]
_AG_CTGTCT__X_XX_XX_XX_XX_XX_X
19._EET_400_[ECU]
_AG_CCGT___X_XX_XX_XX_XX_XX_X
20._RUQ_760
_AGCCCTGT___X_XX_XX_XX_XX_XX_X
21._EET_400_[ECU]_Fld#_153_Plt#_2
AG__AGACAGATGGX_XX_XX_XX_XX_XX_X
22._MITC-000396
AG__AGACAGATGGX_XX_XX_XX_XX_XX_X

Input profile: EET_400_[ECU] GC-01-066-4-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

1._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

2._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._EET_400_[ECU] GC-01-066-4-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

6._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 5
 Dapeng Zhang, 2016

7._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 7
 Dapeng Zhang, 2016

8._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 1 > FP
 Dapeng Zhang, 2016

9._EET_400_[ECU]

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 10 > F
 Dapeng Zhang, 2016

10._EET_400_[ECU]

75 %
38 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot85/Trial II 2B
 Dapeng Zhang, 2016

11._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

12._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._EET_400_[ECU] GC-01-066-4-02

73.1 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

14._EET_400_[ECU] RUQ_760

68.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 9
 Dapeng Zhang, 2016

16._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._EET_400_[ECU]

67.1 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1402 13 > F
 Dapeng Zhang, 2016

18._EET_400_[ECU]

67.1 %
38 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
Location: OCHO CASAS #1
 Dapeng Zhang, 2016

19._EET_400_[ECU]

65.2 %
33 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

20._EET_400_[ECU] RUQ_760

65 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._EET_400_[ECU] EET_400_[ECU]_Fld#_153_Plt#_2

35.9 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 153, Tree: 2
 Mars, 2018

22._EET_400_[ECU] MITC-000396

32.1 %
78 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240