SNP Profiles of AMAZ-12   View Data

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 Key

 1234567891011121314
_Input profile
ATCTACAGAACTCTTTCTGGTTCTCTAT
1._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
2._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
3._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
4._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
5._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
6._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
7._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
8._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
9._AMAZ_12
ATCTAC____TTCTGG_CT__
10._AMAZ_12
ATCTAC____TTCTGG_CT__
11._AMAZ_12
ATCTAC____TTCTGG_CT__
12._AMAZ_12
ATCTAC____TTCTGG_CT__
13._AMAZ_12
ATCTAC____TTCTGG_CT__
14._AMAZ_12
ATCTAC____TTCTGG_CT__
15._AMAZ_12
ATCTAC____TTCTGG_CT__
16._AMAZ_12
ATCTAC____TTCTGG_CT__
17._AMAZ_12
ATCTAC____TTCTGG_CT__
18._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
19._AMAZ_12
ATCTAC____TTCTGG_CT__
20._AMAZ_12
AACCAA____CTCCGG_CT__
21._RUQ_334
_CCAA__TT_CT__CTTT__
22._RUQ_334
AACCAA____CTCCAG_CT__
23._RUQ_334b
__AA__TT________
24._RUQ_334
__AA__CT________
25._RUQ_334
AA_AAGGGG_GGAG_GGAGAGAGTT
 1516171819202122232425262728
_Input profile
CCAAAGCGGGCCAATTGGAAATGGGGAT
1._GC-05-158-4-11
CCAAAGCGGGCCAATTGGAAATGGGGAT
2._GC-05-010-1-10
CCAAAGCGGGCCAATTGGAAATGGGGAT
3._GC-05-010-1-10
CCAAAGCGGGCCAATTGGAAATGGGGAT
4._GC-05-010-1-10
CCAAAGCGGGCCAATTGGAAATGGGGAT
5._GC-05-010-1-10
CCAAAGCGGGCCAATTGGAAATGGGGAT
6._GC-05-158-4-11
CCAAAGCGGGCCAATTGGAAATGGGGAT
7._GC-05-010-1-10
CCAAAGCGGGCCAATTGGAAATGGGGAT
8._GC-05-158-4-11
CCAAAGCGGGCCAA_GGAAATGGGGAT
9._AMAZ_12
__AG_GG____AAAT_GGAT
10._AMAZ_12
__AG_GG____AAAT_GGAT
11._AMAZ_12
__AG_GG____AAAT_GGAT
12._AMAZ_12
__AG_GG____AAAT_GGAT
13._AMAZ_12
__AG_GG____AAAT_GGAT
14._AMAZ_12
__AG_GG____AAAT_GGAT
15._AMAZ_12
__AG_GG____AAAT_GGAT
16._AMAZ_12
__AG_GG____AAAT_GGAT
17._AMAZ_12
__AG_GG____AAAT_GGAT
18._GC-05-158-4-11
CCAAAGCGGGCCAATTGGAAATGGGGAT
19._AMAZ_12
__AG_GG____AAAT_GGAT
20._AMAZ_12
__GG_GG____ATAT_CGAT
21._RUQ_334
________GG_ATCCCG_
22._RUQ_334
__GG_GG____ATAT_CGAT
23._RUQ_334b
__GGCT________CG_
24._RUQ_334
__GGTT________GG_
25._RUQ_334
AAGGGGCGGGAGAAAAGGATATGGCGAT
 2930313233343536373839404142
_Input profile
CTGGGGCCCCAAGTGGGTAACCAGCCGG
1._GC-05-158-4-11
CTGGGGCCCCAAGTGGGTAACCAGCCGG
2._GC-05-010-1-10
CTGGGGCCCCAAGTGGGTAACCAGCCGG
3._GC-05-010-1-10
CTGGGGCCCCAAGTGGGTAACCAGCCGG
4._GC-05-010-1-10
CTGGGGCCCCAAGTGGGTAACCAGCCGG
5._GC-05-010-1-10
CTGGGGCCCCAAGTGGGTAACCAGCCGG
6._GC-05-158-4-11
CTGGGGCCCCAAGTGGGTAACCAGCCGG
7._GC-05-010-1-10
CTGGGGCCCCAAGTGGGTAACCAGCCGG
8._GC-05-158-4-11
CTGGGGCCCCAAGT_GTAACCAGCCGG
9._AMAZ_12
___CC_AAGT__AA____
10._AMAZ_12
___CC_AAGT__AA____
11._AMAZ_12
___CC_AAGT__AA____
12._AMAZ_12
___CC_AAGT__AA____
13._AMAZ_12
___CC_AAGT__AA____
14._AMAZ_12
___CC_AAGT__AA____
15._AMAZ_12
___CC_AAGT__AA____
16._AMAZ_12
___CC_AAGT__AA____
17._AMAZ_12
___CC_AAGT__AA____
18._GC-05-158-4-11
CTGGGGCCCCAGGTGGGTAACCAGCCGG
19._AMAZ_12
___CC_AGGT__AA____
20._AMAZ_12
___GG_AGTT__AA____
21._RUQ_334
__AGCGCCAGGT__AACT__GG
22._RUQ_334
___GG_AGGT__AG____
23._RUQ_334b
___GG_AG____CT___
24._RUQ_334
___GG_AG____TT___
25._RUQ_334
AAACAGCGCCAGACCCAAAAAGGGGGCC
 4344454647484950515253545556
_Input profile
TTCTAAAGAACCCCGGAGGGTTCTCCTT
1._GC-05-158-4-11
TTCTAAAGAACCCCGGAGGGTTCTCCTT
2._GC-05-010-1-10
TTCTAAAGAACCCCGGAGGGTTCTCCTT
3._GC-05-010-1-10
TTCTAAAGAACCCCGGAGGGTTCTCCTT
4._GC-05-010-1-10
TTCTAAAGAACCCCGGAGGGTTCTCCTT
5._GC-05-010-1-10
TTCTAAAGAACCCCGGAGGGTTCTCCTT
6._GC-05-158-4-11
TTCTAAAGAACCCCGGAGGGTT_CCTT
7._GC-05-010-1-10
TTCTAAAGAACCCCGGAGGGTTCTCCTT
8._GC-05-158-4-11
TTCTAAAGAACCCCGGAGGGTTCTCCTT
9._AMAZ_12
_CT_________CTCC_
10._AMAZ_12
_CT_________CTCC_
11._AMAZ_12
_CT_________CTCC_
12._AMAZ_12
_CT_________CTCC_
13._AMAZ_12
_CT_________CTCC_
14._AMAZ_12
_CT_________CTCC_
15._AMAZ_12
_CT__________CC_
16._AMAZ_12
_CT_________CTCC_
17._AMAZ_12
_CT_________CTCC_
18._GC-05-158-4-11
TTCTAAAGAACCCCGGAGGGTTCTCCTT
19._AMAZ_12
_CT_________CTCC_
20._AMAZ_12
_TT_________CCCC_
21._RUQ_334
TT__GG______CTCC_TT
22._RUQ_334
_TT_________CCCC_
23._RUQ_334b
___GG__________
24._RUQ_334
___GG__________
25._RUQ_334
_AA_GGAAGG_GGAAAAAGGGGGAA
 5758596061626364656667686970
_Input profile
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
1._GC-05-158-4-11
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
2._GC-05-010-1-10
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
3._GC-05-010-1-10
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
4._GC-05-010-1-10
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
5._GC-05-010-1-10
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
6._GC-05-158-4-11
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
7._GC-05-010-1-10
AGCGCTCC_GGGGCCAAGTGTAGCTCG
8._GC-05-158-4-11
AGCGCTCC_GGGG_AAGTGTAGCTCG
9._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
10._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
11._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
12._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
13._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
14._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
15._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
16._AMAZ_12
_CG_CC_GG_CCAAGTGT___
17._AMAZ_12
_CG_CC_GG__AAGTGT___
18._GC-05-158-4-11
AGCGCTCCAAGGGGCCAAGTGTAGCTCG
19._AMAZ_12
_CG_CCAAGG_CCAAGTGT___
20._AMAZ_12
_CG_TTACGG_ACGGGTGG___
21._RUQ_334
-CGCTTTAC_GGACGGGTGGAG__
22._RUQ_334
_CG_TTACGG_ACGGGTGG___
23._RUQ_334b
GG______ACGG_GGAG__
24._RUQ_334
GG______ACGG_GGAG__
25._RUQ_334
GGCGAGAAACGGGGACGGACCCAG__
 7172737475767778798081828384
_Input profile
AATTACAGACACAGACCGCCAACCCTCT
1._GC-05-158-4-11
AATTACAGACACAGACCGCCAACCCTCT
2._GC-05-010-1-10
AATTACAGACACAGACCGCCAACCCTCT
3._GC-05-010-1-10
AATTACAGACACAGACCGCCAACCCTCT
4._GC-05-010-1-10
AATTACAGACACAGACCGCCAACCCTCT
5._GC-05-010-1-10
AATTACAGACACAGACCGCCAACCCTCT
6._GC-05-158-4-11
AATTACAGACACAGACCGCCAACCCTCT
7._GC-05-010-1-10
AATTACAGACACAGACCGCCAACCCTCT
8._GC-05-158-4-11
AATTACAGACACAGACCGCCAACCCTCT
9._AMAZ_12
AATT_____ACCG___CTCT
10._AMAZ_12
AATT_____ACCG___CTCT
11._AMAZ_12
AATT_____ACCG___CTCT
12._AMAZ_12
AATT_____ACCG___CTCT
13._AMAZ_12
AATT_____ACCG___CTCT
14._AMAZ_12
AATT_____ACCG___CTCT
15._AMAZ_12
AATT_____ACCG___CTCT
16._AMAZ_12
AATT_____ACCG___CTCT
17._AMAZ_12
AATT_____ACCG___CTCT
18._GC-05-158-4-11
AATTACAGACACAGACCGCCAACCCTCT
19._AMAZ_12
AATT_____ACCG___CTCT
20._AMAZ_12
AATT_____CCGG___CTCT
21._RUQ_334
_______CCGG__CCCT_
22._RUQ_334
AATT_____CCGG___CTCT
23._RUQ_334b
AA______CCGG__CC__
24._RUQ_334
AA______ACGG__AC__
25._RUQ_334
_AACCAGACAA_CCCCGGATCCAGAG
 858687888990919293     
_Input profile
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
1._GC-05-158-4-11
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
2._GC-05-010-1-10
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
3._GC-05-010-1-10
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
4._GC-05-010-1-10
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
5._GC-05-010-1-10
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
6._GC-05-158-4-11
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
7._GC-05-010-1-10
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
8._GC-05-158-4-11
_TTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
9._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
10._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
11._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
12._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
13._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
14._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
15._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
16._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
17._AMAZ_12
__AG_CTGTCT__X_XX_XX_XX_XX_X
18._GC-05-158-4-11
TTTTAGCCCTGTCTATGGX_XX_XX_XX_XX_X
19._AMAZ_12
TT_AG_CTGTCT__X_XX_XX_XX_XX_X
20._AMAZ_12
TT_AA_CCTTCT__X_XX_XX_XX_XX_X
21._RUQ_334
__AACCCCTT___X_XX_XX_XX_XX_X
22._RUQ_334
CT_AA_CCTTCT__X_XX_XX_XX_XX_X
23._RUQ_334b
TT__CC_TT___X_XX_XX_XX_XX_X
24._RUQ_334
CT__CT_TT___X_XX_XX_XX_XX_X
25._RUQ_334
_AG__GGAAAGAAGGX_XX_XX_XX_XX_X

Input profile: AMAZ_12 GC-05-158-4-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._AMAZ_12 GC-05-158-4-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

6._AMAZ_12 GC-05-158-4-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

7._AMAZ_12 GC-05-010-1-10

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._AMAZ_12 GC-05-158-4-11

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 3
 Dapeng Zhang, 2016

10._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 5
 Dapeng Zhang, 2016

11._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 2 > FP
 Dapeng Zhang, 2016

12._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 4 > FP
 Dapeng Zhang, 2016

13._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 3
 Dapeng Zhang, 2016

14._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 1 > FP
 Dapeng Zhang, 2016

15._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 2 > FP
 Dapeng Zhang, 2016

16._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 5
 Dapeng Zhang, 2016

18._AMAZ_12 GC-05-158-4-11

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._AMAZ_12

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 4
 Dapeng Zhang, 2016

20._AMAZ_12

66.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B94 T2
 Dapeng Zhang, 2016

21._AMAZ_12 RUQ_334

65.9 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_12 RUQ_334

64.1 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._AMAZ_12 RUQ_334b

54.8 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._AMAZ_12 RUQ_334

52.4 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._AMAZ_12 RUQ_334

38.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240