SNP Profiles of "AMAZ 12"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-010-1-10
GGGGAAAGCCTTCCCTCCGTCTATGGAA
2. _GC-05-158-4-11
GGGGAAAGCCTTCCCTCCGT___ATGGAA
3. _5110_2_>_FP
GG___AA_______________CCGTCT______AA
4. _5411_1_>_FP
GG___AA_______________CCGTCT______AA
5. _GC-05-010-1-10
GGGGAAAGCCTTCCCTCCGTCTATGGAA
6. _GC-05-158-4-11
GG___AAAGCCTTCCCT___GTCTATGG___
7. _5110_3
GG___AA_______________CCGTCT______AA
8. _5411_4
GG___AA_______________CCGTCT______AA
9. _GC-05-010-1-10
GGGGAAAGCCTTCCCTCCGTCTATGGAA
10. _GC-05-158-4-11
GGGGAAAGCCTTCCCTCCGTCTATGGAA
11. _5110_4_>_FP
GG___AA_______________CCGTCT______AA
12. _5411_2_>_FP
GG___AA_______________CCGT_________AA
13. _GC-05-010-1-10
GGGGAAAGCCTTCCCTCCGTCTATGG___
14. _GC-05-158-4-11
GGGGAAAGCCTTCCCTCCGTCTATGGAA
15. _5110_5
GG___AA_______________CCGTCT______AA
16. _5411_5
GG___AA__________________GTCT_________
17. _GC-05-010-1-10
GGGGAAAGCCTTCCCTCCGTCTATGGAA
18. _GC-05-158-4-11
GGGGAAAGCCTTCCCTCCGTCTATGGAA
19. _5110_1
GG___AA_______________CCGTCT_________
20. _5411_3
GG___AA_______________CCGTCT______AA
21. _RUQ_334
GGCCATGGGGAGCCAGACACGGAAGGAC
22. _RUQ_334
GG___AT_______________ACGTCC______AC
23. _RUQ_334
_______________CTCC___ACGTCC___GGAC
24. _6B_B94_T2
GG___AT_______________ACTTCC______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-010-1-10
CGAAGGCTATAGGGATCCAAGGAAGGAG
2. _GC-05-158-4-11
CGAAGGCTATAGGGATCCAAGGAAGGAG
3. _5110_2_>_FP
CGAA___CT_________AT______GG______AG
4. _5411_1_>_FP
CGAA___CT_________AT______GG______AG
5. _GC-05-010-1-10
CGAAGGCTATAGGGATCCAAGGAAGGAG
6. _GC-05-158-4-11
CGAAGGCTATAGGGATCCAAGGAAGGAG
7. _5110_3
CGAA___CT_________AT______GG______AG
8. _5411_4
CGAA___CT_________AT______GG______AG
9. _GC-05-010-1-10
CGAAGGCTATAGGGATCCAAGGAAGGAG
10. _GC-05-158-4-11
CGAAGGCTATAGGGATCCAAGGAAGGAG
11. _5110_4_>_FP
CGAA___CT_________AT______GG______AG
12. _5411_2_>_FP
CGAA___CT_________AT______GG______AG
13. _GC-05-010-1-10
CGAAGGCTATAGGGATCCAAGGAAGGAG
14. _GC-05-158-4-11
CGAAGGCTATAGGGATCCAAGGAAGGAG
15. _5110_5
CGAA___CT_________AT______GG______AG
16. _5411_5
CGAA___CT_________AT______GG______AG
17. _GC-05-010-1-10
CGAAGGCTATAGGGATCCAAGGAAGGAG
18. _GC-05-158-4-11
CGAAGGCTATAGGGATCCAAGGAAGGAG
19. _5110_1
CGAA___CT_________AT______GG______AG
20. _5411_3
CGAA___CT_________AT______GG______AG
21. _RUQ_334
CGGGGGGGTTGGGGATAGGGGGATGG___
22. _RUQ_334
CGGG___CC_________AT______AG______AA
23. _RUQ_334
CGGG___CC___GGGGAT____________CCAA
24. _6B_B94_T2
CGGG___CC_________AT______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-010-1-10
___CCACCTAGGTAGCCACCCAACTAAAA
2. _GC-05-158-4-11
___CCACCTAGGTAGCCACCCAACTAAAA
3. _5110_2_>_FP
______ACCT___GT___CCAC______CTAA___
4. _5411_1_>_FP
______ACCT___GT___CCAC______CTAA___
5. _GC-05-010-1-10
___CCACCTAGGTAGCCACCCAACTAAAA
6. _GC-05-158-4-11
___CCACCTAGGTAGCCACCCAACTAAAA
7. _5110_3
______ACCT___GT___CCAC______CTAA___
8. _5411_4
______ACCT___GT___CCAC______CTAA___
9. _GC-05-010-1-10
___CCACCTAGGTAGCCACCCAACTAAAA
10. _GC-05-158-4-11
___CCACCTAGGTAGCCACCCAACTAAAA
11. _5110_4_>_FP
______ACCT___GT___CCAC______CTAA___
12. _5411_2_>_FP
______ACCT___GT___CCAC______CTAA___
13. _GC-05-010-1-10
___CCACCTAGGTAGCCACCCAACTAAAA
14. _GC-05-158-4-11
___CCACCTAGGTAGCCACCCAACTAAAA
15. _5110_5
______ACCT___GT___CCAC______CTAA___
16. _5411_5
______ACCT___GT___CCAC______CTAA___
17. _GC-05-010-1-10
___CCACCTAGGTAGCCACCCAACTAAAA
18. _GC-05-158-4-11
___CCACCTAGGTAGCCACCCAACTAAAA
19. _5110_1
______ACCT___GT___CCAC______CTAA___
20. _5411_3
______ACCT___GT___CCAC______CTAA___
21. _RUQ_334
AAAACC___AAACGGCGAAAG___AG___AA
22. _RUQ_334
______CCCC___GT___GGAA______CTAA___
23. _RUQ_334
______CCCC___GT___CGAACT___CT______
24. _6B_B94_T2
______CCCC___GT___GGAA______CTAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-010-1-10
AACTCTGTAGGTGGTTCCCGAAGGCCCT
2. _GC-05-158-4-11
AACTCTGTAGGTGGTTCCCGAAGGCCCT
3. _5110_2_>_FP
_________GT_____________________GG___CT
4. _5411_1_>_FP
_________GT_____________________GG___CT
5. _GC-05-010-1-10
AACTCTGTAGGTGGTTCCCGAAGGCCCT
6. _GC-05-158-4-11
AACTCTGTAGGTGGTTCCCGAAGGCCCT
7. _5110_3
_________GT_____________________GG___CT
8. _5411_4
_________GT_____________________GG___CT
9. _GC-05-010-1-10
AACTCTGTAGGTGGTTCCCGAAGGCCCT
10. _GC-05-158-4-11
AACTCTGTAGGTGGTTCCCGAAGG___CT
11. _5110_4_>_FP
_________GT_____________________GG___CT
12. _5411_2_>_FP
_________GT_____________________GG___CT
13. _GC-05-010-1-10
AACTCTGTAGGTGGTTCCCGAAGGCCCT
14. _GC-05-158-4-11
AACTCTGTAGGTGGTTCCCGAAGGCCCT
15. _5110_5
_________GT_____________________GG___CT
16. _5411_5
_________GT_____________________GG___CT
17. _GC-05-010-1-10
AACTCTGTAGGTGGTTCCCGAAGGCCCT
18. _GC-05-158-4-11
AACTCTGTAGGTGGTTCCCGAAGGCCCT
19. _5110_1
_________GT_____________________GG___CT
20. _5411_3
_________GT_____________________GG___CT
21. _RUQ_334
AA______CCAGAAAAAACCCGGGCG___AG
22. _RUQ_334
_________GG_____________________CG___CT
23. _RUQ_334
______TTGGAG______TTCC______CGCGTT
24. _6B_B94_T2
_________GG_____________________CG___CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-010-1-10
CCAGTTGGCCATCTAACCCTCGTTAGGG
2. _GC-05-158-4-11
CCAGTTGGCCATCTAACCCTCGTTAGGG
3. _5110_2_>_FP
______TTGG___ATCTAA_________TTAG___
4. _5411_1_>_FP
______TTGG___ATCTAA_________TTAG___
5. _GC-05-010-1-10
CCAGTTGGCCATCTAACCCTCGTTAGGG
6. _GC-05-158-4-11
CCAGTTGGCCATCTAACCCTCGTTAGGG
7. _5110_3
______TTGG___ATCTAA_________TTAG___
8. _5411_4
______TTGG___ATCTAG_________TTAG___
9. _GC-05-010-1-10
CCAGTTGGCCATCTAACCCTCGTTAGGG
10. _GC-05-158-4-11
CCAGTTGGCCATCTAACCCTCGTTAGGG
11. _5110_4_>_FP
______TTGG___ATCTAA_________TTAG___
12. _5411_2_>_FP
______TTGG___ATCTAA_________TTAG___
13. _GC-05-010-1-10
CCAGTTGGCCATCTAACCCTCGTTAGGG
14. _GC-05-158-4-11
CCAGTTGGCCATCTAACCCTCGTTAGGG
15. _5110_5
______TTGG___ATCTAA_________TTAG___
16. _5411_5
______TTGG___ATCTAA_________TTAG___
17. _GC-05-010-1-10
CCAGTTGGCCATCTAACCCTCGTTAGGG
18. _GC-05-158-4-11
CCAGTTGGCCATCTAGCCCTCGTTAGGG
19. _5110_1
______TTGG___ATCTAA_________TTAG___
20. _5411_3
______TTGG___ATCTAA_________TTAG___
21. _RUQ_334
GGGGAAGGGGATAGAG___AA___AGGGCC
22. _RUQ_334
______TTGG___ATCTAG_________CTGG___
23. _RUQ_334
___-_______________AGCC______CT___GG
24. _6B_B94_T2
______TTGG___ATCTAG_________CTGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-010-1-10
ATCTGGTTTTTTTTCTGGCCGTCTTT___
2. _GC-05-158-4-11
ATCTGGTTTTTTTTCTGGCCGTCTTTCC
3. _5110_2_>_FP
AT_________TT______CT______GTCT______
4. _5411_1_>_FP
AT_________TT______CT______GTCT______
5. _GC-05-010-1-10
ATCTGGTTTTTTTTCTGGCCGTCTTT___
6. _GC-05-158-4-11
ATCTGGTT______TTCTGGCCGTCTTT___
7. _5110_3
AT_________TT______CT______GTCT______
8. _5411_4
AT_________TT______CT______GTCT______
9. _GC-05-010-1-10
ATCTGGTTTTTTTTCTGGCCGTCTTT___
10. _GC-05-158-4-11
ATCTGGTTTTTTTTCTGGCCGTCTTT___
11. _5110_4_>_FP
AT_________TT______CT______GTCT______
12. _5411_2_>_FP
AT_________TT______CT______GTCT___CC
13. _GC-05-010-1-10
ATCTGGTTTTTTTTCTGGCCGTCTTT___
14. _GC-05-158-4-11
ATCTGGTTTTTTTTCTGGCCGTCTTT___
15. _5110_5
AT_________TT______CT______GTCT______
16. _5411_5
AT__________________CT______GTCT______
17. _GC-05-010-1-10
ATCTGGTTTTTTTTCTGGCCGTCTTT___
18. _GC-05-158-4-11
ATCTGGTTTTTTTTCTGGCCGTCTTT___
19. _5110_1
AT_________TT______CT______GTCT______
20. _5411_3
AT_________TT______CT______GTCT______
21. _RUQ_334
AAGGAG______AAAG___AC___AAAAAGAC
22. _RUQ_334
AA_________CT______CC______TTTT___AC
23. _RUQ_334
______AGTT__________________TT___CT___
24. _6B_B94_T2
AA_________TT______CC______TTTT___AC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-05-010-1-10
GGCTCTCCCGAACCACAGACAGACX_XX_X
2. _GC-05-158-4-11
GGCTCTCCCGAACCACAGACAGACX_XX_X
3. _5110_2_>_FP
___CT___CCCGAACC_______________X_XX_X
4. _5411_1_>_FP
___CT___CCCGAACC_______________X_XX_X
5. _GC-05-010-1-10
GGCTCTCCCGAACCACAGACAGACX_XX_X
6. _GC-05-158-4-11
GGCTCTCCCGAACCACAGACAGACX_XX_X
7. _5110_3
___CT___CCCGAACC_______________X_XX_X
8. _5411_4
___CT___CCCGAACC_______________X_XX_X
9. _GC-05-010-1-10
GGCTCTCCCGAACCACAGACAGACX_XX_X
10. _GC-05-158-4-11
GGCTCTCCCGAACCACAGACAGACX_XX_X
11. _5110_4_>_FP
___CT___CCCGAACC_______________X_XX_X
12. _5411_2_>_FP
___CT___CCCGAACC_______________X_XX_X
13. _GC-05-010-1-10
GGCTCTCCCGAACCACAGACAGACX_XX_X
14. _GC-05-158-4-11
GGCTCTCCCGAACCACAGACAGACX_XX_X
15. _5110_5
___CT___CCCGAACC_______________X_XX_X
16. _5411_5
___CT___CCCGAACC_______________X_XX_X
17. _GC-05-010-1-10
GGCTCTCCCGAACCACAGACAGACX_XX_X
18. _GC-05-158-4-11
GGCTCTCCCGAACCACAGACAGACX_XX_X
19. _5110_1
___CT___CCCGAACC_______________X_XX_X
20. _5411_3
___CT___CCCGAACC_______________X_XX_X
21. _RUQ_334
GGAGAGAACCAAGGAC___CCAGAAX_XX_X
22. _RUQ_334
___CT___TTGGAGCC_______________X_XX_X
23. _RUQ_334
______CTTTGGAA__________________X_XX_X
24. _6B_B94_T2
___CT___TTGGAACC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._AMAZ_12 GC-05-010-1-10
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018
2._AMAZ_12 GC-05-158-4-11
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018
3._AMAZ_12
Location: 5110 2 > FP
 Dapeng Zhang, 2016
4._AMAZ_12
Location: 5411 1 > FP
 Dapeng Zhang, 2016
5._AMAZ_12 GC-05-010-1-10
Location: Tree: 5
Notes: 5
 Mars, 2018
6._AMAZ_12 GC-05-158-4-11
Location: Tree: 5
Notes: 5
 Mars, 2018
7._AMAZ_12
Location: 5110 3
 Dapeng Zhang, 2016
8._AMAZ_12
Location: 5411 4
 Dapeng Zhang, 2016
9._AMAZ_12 GC-05-010-1-10
Location: Tree: 3
Notes: 3
 Mars, 2018
10._AMAZ_12 GC-05-158-4-11
Location: Tree: 3
Notes: 3
 Mars, 2018
11._AMAZ_12
Location: 5110 4 > FP
 Dapeng Zhang, 2016
12._AMAZ_12
Location: 5411 2 > FP
 Dapeng Zhang, 2016
13._AMAZ_12 GC-05-010-1-10
Location: Tree: 1
Notes: 1
 Mars, 2018
14._AMAZ_12 GC-05-158-4-11
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018
15._AMAZ_12
Location: 5110 5
 Dapeng Zhang, 2016
16._AMAZ_12
Location: 5411 5
 Dapeng Zhang, 2016
17._AMAZ_12 GC-05-010-1-10
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018
18._AMAZ_12 GC-05-158-4-11
Location: Tree: 4
Notes: 4
 Mars, 2018
19._AMAZ_12
Location: 5110 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
20._AMAZ_12
Location: 5411 3
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

21._AMAZ_12 RUQ 334
Notes: Reading_Collection
 Mars, 2018
22._AMAZ_12 RUQ 334
 Dapeng Zhang, 2016
23._AMAZ_12 RUQ 334
 Dapeng Zhang, 2014

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

24._AMAZ_12
Location: 6B B94 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133