SNP Profiles of AMAZ-12   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCTACAGAACTCTTTCTGGTTCTCT
1._GC-05-158-4-11
AT_CTACAGAACTCTTTCTGGTTCTCT
2._GC-05-010-1-10
AT_CTACAGAACTCTTTCTGGTTCTCT
3._GC-05-010-1-10
AT_CTACAGAACTCTTTCTGGTTCTCT
4._GC-05-010-1-10
AT_CTACAGAACTCTTTCTGGTTCTCT
5._GC-05-010-1-10
AT_CTACAGAACTCTTTCTGGTTCTCT
6._GC-05-158-4-11
AT_CTACAGAACTCTTTCTGGTTCTCT
7._GC-05-010-1-10
AT_CTACAGAACTCTTTCTGGTTCTCT
8._GC-05-158-4-11
AT_CTACAGAACTCTTTCTGGTTCTCT
9._AMAZ_12
ATCCCTAC____TTCTGG_CT_
10._AMAZ_12
AT_CTAC____TTCTGG_CT_
11._AMAZ_12
AT_CTAC____TTCTGG_CT_
12._AMAZ_12
AT_CTAC____TTCTGG_CT_
13._AMAZ_12
AT_CTAC____TTCTGG_CT_
14._AMAZ_12
AT_CTAC____TTCTGG_CT_
15._AMAZ_12
AT_CTAC____TTCTGG_CT_
16._AMAZ_12
AT_CTAC____TTCTGG_CT_
17._AMAZ_12
AT_CTAC____TTCTGG_CT_
18._GC-05-158-4-11
AT_CTACAGAACTCTTTCTGGTTCTCT
19._AMAZ_12
AT_CTAC____TTCTGG_CT_
20._AMAZ_12
AAACCCAA____CTCCGG_CT_
21._RUQ_334
__CCAA__TT_CT__CTTT_
22._RUQ_334
AAACCCAA____CTCCAG_CT_
23._RUQ_334b
___AA__TT_______
24._RUQ_334
___AA__CT_______
25._RUQ_334
AAAC_AAGGGG_GGAG_GGAGAGAG
 1516171819202122232425262728
_Input profile
ATCCAAAGCGCCGGCCAATTGGAAATGG
1._GC-05-158-4-11
ATCCAAAGCGCCGGCCAATTGGAAATGG
2._GC-05-010-1-10
ATCCAAAGCGCCGGCCAATTGGAAATGG
3._GC-05-010-1-10
ATCCAAAGCGCCGGCCAATTGGAAATGG
4._GC-05-010-1-10
ATCCAAAGCGCCGGCCAATTGGAAATGG
5._GC-05-010-1-10
ATCCAAAGCGCCGGCCAATTGGAAATGG
6._GC-05-158-4-11
ATCCAAAGCG_GGCCAATTGGAAATGG
7._GC-05-010-1-10
ATCCAAAGCGCCGGCCAATTGGAAATGG
8._GC-05-158-4-11
ATCCAAAGCGCCGGCCAA_GGAAATGG
9._AMAZ_12
___AG__GG____AAAT_
10._AMAZ_12
___AG__GG____AAAT_
11._AMAZ_12
___AG__GG____AAAT_
12._AMAZ_12
___AG__GG____AAAT_
13._AMAZ_12
___AG__GG____AAAT_
14._AMAZ_12
___AG__GG____AAAT_
15._AMAZ_12
___AG__GG____AAAT_
16._AMAZ_12
___AG__GG____AAAT_
17._AMAZ_12
___AG__GG____AAAT_
18._GC-05-158-4-11
ATCCAAAGCGCCGGCCAATTGGAAATGG
19._AMAZ_12
___AG__GG____AAAT_
20._AMAZ_12
___GG__GG____ATAT_
21._RUQ_334
_____CG____GG_ATCC
22._RUQ_334
___GG__GG____ATAT_
23._RUQ_334b
___GGCT_________
24._RUQ_334
___GGTT_________
25._RUQ_334
TTAAGGGGCG_GGAGAAAAGGATATGG
 2930313233343536373839404142
_Input profile
GGATCTGGGGCCCCAAGTGGGTAACCAG
1._GC-05-158-4-11
GGATCTGGGGCCCCAAGTGGGTAACCAG
2._GC-05-010-1-10
GGATCTGGGGCCCCAAGTGGGTAACCAG
3._GC-05-010-1-10
GGATCTGGGGCCCCAAGTGGGTAACCAG
4._GC-05-010-1-10
GGATCTGGGGCCCCAAGTGGGTAACCAG
5._GC-05-010-1-10
GGATCTGGGGCCCCAAGTGGGTAACCAG
6._GC-05-158-4-11
GGATCTGGGGCCCCAAGTGGGTAACCAG
7._GC-05-010-1-10
GGATCTGGGGCCCCAAGTGGGTAACCAG
8._GC-05-158-4-11
GGATCTGGGGCCCCAAGT_GTAACCAG
9._AMAZ_12
GGAT___CC_AAGT__AA__
10._AMAZ_12
GGAT___CC_AAGT__AA__
11._AMAZ_12
GGAT___CC_AAGT__AA__
12._AMAZ_12
GGAT___CC_AAGT__AA__
13._AMAZ_12
GGAT___CC_AAGT__AA__
14._AMAZ_12
GGAT___CC_AAGT__AA__
15._AMAZ_12
GGAT___CC_AAGT__AA__
16._AMAZ_12
GGAT___CC_AAGT__AA__
17._AMAZ_12
GGAT___CC_AAGT__AA__
18._GC-05-158-4-11
GGATCTGGGGCCCCAGGTGGGTAACCAG
19._AMAZ_12
GGAT___CC_AGGT__AA__
20._AMAZ_12
CGAT___GG_AGTT__AA__
21._RUQ_334
CG___AGCGCCAGGT__AACT_
22._RUQ_334
CGAT___GG_AGGT__AG__
23._RUQ_334b
CG____GG_AG____CT_
24._RUQ_334
GG____GG_AG____TT_
25._RUQ_334
CGATAAACAGCGCCAGACCCAAAAAGGG
 4344454647484950515253545556
_Input profile
CCGGTTCTAAAGAACCCCGGAGGGTTCC
1._GC-05-158-4-11
CCGGTTCTAAAGAACCCCGGAGGGTTCC
2._GC-05-010-1-10
CCGGTTCTAAAGAACCCCGGAGGGTTCC
3._GC-05-010-1-10
CCGGTTCTAAAGAACCCCGGAGGGTTCC
4._GC-05-010-1-10
CCGGTTCTAAAGAACCCCGGAGGGTTCC
5._GC-05-010-1-10
CCGGTTCTAAAGAACCCCGGAGGGTTCC
6._GC-05-158-4-11
CCGGTTCTAAAGAACCCCGGAGGGTTCC
7._GC-05-010-1-10
CCGGTTCTAAAGAACCCCGGAGGGTTCC
8._GC-05-158-4-11
CCGGTTCTAAAGAACCCCGGAGGGTTCC
9._AMAZ_12
___CT_________CC
10._AMAZ_12
___CT_________CC
11._AMAZ_12
___CT_________CC
12._AMAZ_12
___CT_________CC
13._AMAZ_12
___CT_________CC
14._AMAZ_12
___CT_________CC
15._AMAZ_12
___CT_________CC
16._AMAZ_12
___CT_________CC
17._AMAZ_12
___CT_________CC
18._GC-05-158-4-11
CCGGTTCTAAAGAACCCCGGAGGGTTCC
19._AMAZ_12
___CT_________CC
20._AMAZ_12
___TT_________CC
21._RUQ_334
_GGTT__GG______CT_
22._RUQ_334
___TT_________CC
23._RUQ_334b
_____GG________
24._RUQ_334
_____GG________
25._RUQ_334
GGCC_AA_GGAAGG_GGAAAAAGGG
 5758596061626364656667686970
_Input profile
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
1._GC-05-158-4-11
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
2._GC-05-010-1-10
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
3._GC-05-010-1-10
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
4._GC-05-010-1-10
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
5._GC-05-010-1-10
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
6._GC-05-158-4-11
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
7._GC-05-010-1-10
TTAGCGCTCC_GGGGCCAAGTGTAGCT
8._GC-05-158-4-11
TTAGCGCTCC_GGGG_AAGTGTAGCT
9._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
10._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
11._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
12._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
13._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
14._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
15._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
16._AMAZ_12
__CG_CC_GG_CCAAGTGT__
17._AMAZ_12
__CG_CC_GG__AAGTGT__
18._GC-05-158-4-11
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
19._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
20._AMAZ_12
__CG_TTACGG_ACGGGTGG__
21._RUQ_334
TT-CGCTTTAC_GGACGGGTGGAG_
22._RUQ_334
__CG_TTACGG_ACGGGTGG__
23._RUQ_334b
_GG______ACGG_GGAG_
24._RUQ_334
_GG______ACGG_GGAG_
25._RUQ_334
AAGGCGAGAAACGGGGACGGACCCAG_
 7172737475767778798081828384
_Input profile
CGAATTACAGACACAGACCGCCAACCCT
1._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
2._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
3._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
4._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
5._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
6._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
7._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
8._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
9._AMAZ_12
_AATT_____ACCG___CT
10._AMAZ_12
_AATT_____ACCG___CT
11._AMAZ_12
_AATT_____ACCG___CT
12._AMAZ_12
_AATT_____ACCG___CT
13._AMAZ_12
_AATT_____ACCG___CT
14._AMAZ_12
_AATT_____ACCG___CT
15._AMAZ_12
_AATT_____ACCG___CT
16._AMAZ_12
_AATT_____ACCG___CT
17._AMAZ_12
_AATT_____ACCG___CT
18._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
19._AMAZ_12
_AATT_____ACCG___CT
20._AMAZ_12
_AATT_____CCGG___CT
21._RUQ_334
________CCGG__CCCT
22._RUQ_334
_AATT_____CCGG___CT
23._RUQ_334b
_AA______CCGG__CC_
24._RUQ_334
_AA______ACGG__AC_
25._RUQ_334
__AACCAGACAA_CCCCGGATCCAG
 85868788899091929394    
_Input profile
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
1._GC-05-158-4-11
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
2._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
3._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
4._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
5._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
6._GC-05-158-4-11
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
7._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
8._GC-05-158-4-11
CT_TTAGCCCTGTCTATGGX_XX_XX_XX_X
9._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
10._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
11._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
12._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
13._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
14._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
15._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
16._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
17._AMAZ_12
CT__AG_CTGTCT__X_XX_XX_XX_X
18._GC-05-158-4-11
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
19._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
20._AMAZ_12
CTTT_AA_CCTTCT__X_XX_XX_XX_X
21._RUQ_334
___AACCCCTT___X_XX_XX_XX_X
22._RUQ_334
CTCT_AA_CCTTCT__X_XX_XX_XX_X
23._RUQ_334b
_TT__CC_TT___X_XX_XX_XX_X
24._RUQ_334
_CT__CT_TT___X_XX_XX_XX_X
25._RUQ_334
AG_AG__GGAAAGAAGGX_XX_XX_XX_X

Input profile: AMAZ_12 GC-05-158-4-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

1._AMAZ_12 GC-05-158-4-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

6._AMAZ_12 GC-05-158-4-11

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._AMAZ_12 GC-05-010-1-10

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._AMAZ_12 GC-05-158-4-11

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 2 > FP
 Dapeng Zhang, 2016

10._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 3
 Dapeng Zhang, 2016

11._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 5
 Dapeng Zhang, 2016

12._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 2 > FP
 Dapeng Zhang, 2016

13._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 4 > FP
 Dapeng Zhang, 2016

14._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 3
 Dapeng Zhang, 2016

15._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 1 > FP
 Dapeng Zhang, 2016

16._AMAZ_12

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._AMAZ_12

identical
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 5
 Dapeng Zhang, 2016

18._AMAZ_12 GC-05-158-4-11

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._AMAZ_12

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 4
 Dapeng Zhang, 2016

20._AMAZ_12

66.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B94 T2
 Dapeng Zhang, 2016

21._AMAZ_12 RUQ_334

65.9 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_12 RUQ_334

64.1 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._AMAZ_12 RUQ_334b

54.8 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._AMAZ_12 RUQ_334

52.4 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._AMAZ_12 RUQ_334

39.4 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240