SNP Profiles of PA-156/T1   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTAAGGGGCCCCCCCCGGTTCTCT
1._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
2._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
3._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
4._GC-05-138-3-40
AAAACTAAGGGGCCCCCCCCGGTTCTCT
5._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
6._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
7._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
8._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
9._PA_156_[PER]
AAAACTAA____CCCCGG_CT_
10._RUQ_1531
__CCCC__CT_CC__TTCC_
11._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
12._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
13._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
14._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
15._GC-05-137-3-39
AACCCCCCGGAGCTCCCCCCGGTTCCTT
16._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
17._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
18._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
19._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
20._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
21._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
22._RUQ_1531
AACCCCCC____CCCCGG_CC_
23._PA_156_[PER]
AACCCCCC____CCCCGG_CC_
24._PA156[PER]
___CC____CC___CC_
25._RUQ_1531
___CC__CT_______
26._RUQ_1531
AACC_CCGGAG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAGGCCCGCTAATTGGATAACCCG
1._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
2._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
3._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
4._GC-05-138-3-40
AACCAAGGCCCGCTAATTGGATAACCCG
5._PA_156_[PER]
__AA__CG____ATAA_CG
6._PA_156_[PER]
__AA__CG____ATAA_CG
7._PA_156_[PER]
__AA__CG____ATAA_CG
8._PA_156_[PER]
__AA__CG____ATAA_CG
9._PA_156_[PER]
__AA__CG____ATAA_CG
10._RUQ_1531
____CC____GG_AACCGG
11._GC-05-137-3-39
AACCGG_CCCGTTAATTGGATAACCGG
12._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
13._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
14._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
15._GC-05-137-3-39
AACCGGCCCCCGTTAATTGGATAACCGG
16._PA_156_[PER]
__GG__CG____ATAA_GG
17._PA_156_[PER]
__GG__CG____ATAA_GG
18._PA_156_[PER]
__GG__CG____ATAA_GG
19._PA_156_[PER]
__GG__CG____ATAA_GG
20._PA_156_[PER]
__GG__CG____ATAA_GG
21._PA_156_[PER]
__GG__CG____ATAA_GG
22._RUQ_1531
__GG__CG____ATAA_GG
23._PA_156_[PER]
__GG__CG____ATAA_GG
24._PA156[PER]
____GG_TT__GG_AACCCC
25._RUQ_1531
__GGTT_________GG
26._RUQ_1531
TTCCGGGG_CGAAAAAAGGATAAGGCC
 2930313233343536373839404142
_Input profile
AATTGGAGCGCCAGTTGGTTAGCTAGCC
1._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
2._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
3._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
4._GC-05-138-3-40
AATTGGAGCGCCAGTTGGTTAGCTAGCC
5._PA_156_[PER]
AA___CG_AGTT__AG___
6._PA_156_[PER]
AA___CG_AGTT__AG___
7._PA_156_[PER]
AA___CG_AGTT__AG___
8._PA_156_[PER]
AA___CG_AGTT__AG___
9._PA_156_[PER]
AA___CG_AGTT__AG___
10._RUQ_1531
___GGCGCCAGGG__AGTT__
11._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
12._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTAGCC
13._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
14._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
15._GC-05-137-3-39
AATTGTGGCGCCAGGGGGTTAGTTGGCC
16._PA_156_[PER]
AA___CG_AGGG__AG___
17._PA_156_[PER]
AA___CG_AGGG__AG___
18._PA_156_[PER]
AA___CG_AGGG__AG___
19._PA_156_[PER]
AA___CG_AGGG__AG___
20._PA_156_[PER]
AA___CG_AGGG__AG___
21._PA_156_[PER]
AA___CG_AGGG__AG___
22._RUQ_1531
AA___CG_AGGG__AG___
23._PA_156_[PER]
AA___CG_AGGG__AG___
24._PA156[PER]
___GGCG____TT_TT__
25._RUQ_1531
____CG_AG____TT__
26._RUQ_1531
AAAAACGGCGCCAGCCCCAAAGAAGGGG
 4344454647484950515253545556
_Input profile
GGTTCTAAGGAACCCCGGGGTTTTCTTT
1._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
2._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
3._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
4._GC-05-138-3-40
GGTTCTAAGGAACCCCGGGGTTTTCTTT
5._PA_156_[PER]
__CT_________CT_
6._PA_156_[PER]
__CT_________CT_
7._PA_156_[PER]
__CT_________CT_
8._PA_156_[PER]
__CT_________CT_
9._PA_156_[PER]
__CT_________CT_
10._RUQ_1531
GGTT__GG______TT_TT
11._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
12._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
13._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
14._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
15._GC-05-137-3-39
GGTTTTAAGGAACCCCGGAGGGTTCCTT
16._PA_156_[PER]
__TT_________CC_
17._PA_156_[PER]
__TT_________CC_
18._PA_156_[PER]
__TT_________CC_
19._PA_156_[PER]
__TT_________CC_
20._PA_156_[PER]
__TT_________CC_
21._PA_156_[PER]
__TT_________CC_
22._RUQ_1531
__TT_________CC_
23._PA_156_[PER]
__TT_________CC_
24._PA156[PER]
_TT_AA__________
25._RUQ_1531
____GG_________
26._RUQ_1531
CC_AA_GGAAGG_GGAGCCAAGGAA
 5758596061626364656667686970
_Input profile
AACCCTCTAAGGGGAAAAGTGGGGTTCC
1._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
2._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
3._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
4._GC-05-138-3-40
AACCCTCTAAGGGGAAAAGTGGGGTTCC
5._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
6._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
7._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
8._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
9._PA_156_[PER]
_CC_CTAAGG_AAAAGTGG___
10._RUQ_1531
GGCCCTCTAA_GGACAATTGGGG__
11._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
12._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
13._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
14._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
15._GC-05-137-3-39
AGCCCTCTAAGGGGACAATTGGGGCTCC
16._PA_156_[PER]
___CTAAGG_ACAATTGG___
17._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
18._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
19._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
20._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
21._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
22._RUQ_1531
_CC_CTAAGG_ACAATTGG___
23._PA_156_[PER]
_CC_CTAAGG_ACAATTGG___
24._PA156[PER]
_GGCT_AA_GGACAA____CC
25._RUQ_1531
AG______ACAA_GGGG__
26._RUQ_1531
AGGGAGAGAAGGGGACAAAACCGG__
 7172737475767778798081828384
_Input profile
AGCTAAAAACAAAACCGGCCATAACTTT
1._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
2._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
3._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
4._GC-05-138-3-40
AGCTAAAAACAAAACCGGCCATAACTTT
5._PA_156_[PER]
AGCT_____CCGG___CTTT
6._PA_156_[PER]
AGCT_____CCGG___CTTT
7._PA_156_[PER]
AGCT_____CCGG___CTTT
8._PA_156_[PER]
AGCT_____CCGG___CTTT
9._PA_156_[PER]
AGCT_____CCGG___CTTT
10._RUQ_1531
_______ACGG__ACTT_
11._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
12._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
13._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
14._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
15._GC-05-137-3-39
AATTCCAGAAAAAGACGGCCATACTTCC
16._PA_156_[PER]
AATT_____ACGG___TTCC
17._PA_156_[PER]
AATT_____ACGG___TTCC
18._PA_156_[PER]
AATT_____ACGG___TTCC
19._PA_156_[PER]
AATT_____ACGG___TTCC
20._PA_156_[PER]
AATT_____ACGG___TTCC
21._PA_156_[PER]
AATT_____ACGG___TTCC
22._RUQ_1531
AATT_____ACGG___TTCC
23._PA_156_[PER]
AATT_____ACGG___TTCC
24._PA156[PER]
________CC____CC
25._RUQ_1531
AA______ACGG__AC__
26._RUQ_1531
_AACCAGAAAA_ACCCGGATACAAGG
 858687888990919293     
_Input profile
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
1._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
2._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
3._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
4._GC-05-138-3-40
TTCCAATTCTTTTTATGGX_XX_XX_XX_XX_X
5._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
6._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
7._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
8._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
9._PA_156_[PER]
TT_AA_CTTTTT__X_XX_XX_XX_XX_X
10._RUQ_1531
__AA-CCTT___X_XX_XX_XX_XX_X
11._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
12._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
13._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
14._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
15._GC-05-137-3-39
CCCTAACTCCTTTTAAGGX_XX_XX_XX_XX_X
16._PA_156_[PER]
__AA_CCTTTT__X_XX_XX_XX_XX_X
17._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
18._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
19._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
20._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
21._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
22._RUQ_1531
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
23._PA_156_[PER]
CC_AA_CCTTTT__X_XX_XX_XX_XX_X
24._PA156[PER]
_________X_XX_XX_XX_XX_X
25._RUQ_1531
CC__CT_TT___X_XX_XX_XX_XX_X
26._RUQ_1531
_AG__GGAAAATTGGX_XX_XX_XX_XX_X

Input profile: PA_156_[PER] GC-05-138-3-40

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

1._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._PA_156_[PER] GC-05-138-3-40

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

6._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

7._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

8._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

9._PA_156_[PER]

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

10._PA_156_[PER] RUQ_1531

78 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._PA_156_[PER] GC-05-137-3-39

75 %
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

12._PA_156_[PER] GC-05-137-3-39

74.7 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

13._PA_156_[PER] GC-05-137-3-39

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

14._PA_156_[PER] GC-05-137-3-39

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_156_[PER] GC-05-137-3-39

74.2 %
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._PA_156_[PER]

70.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

17._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

18._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

19._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

20._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

21._PA_156_[PER]

69.2 %
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

22._PA_156_[PER] RUQ_1531

69.2 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._PA_156_[PER]

69.2 %
39 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

24._PA_156_[PER] PA156[PER]

66.7 %
24 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

25._PA_156_[PER] RUQ_1531

59.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

26._PA_156_[PER] RUQ_1531

40.5 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240