SNP Profiles of IMC-67/S.DALVA   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCACGGGGCCCCCCCCGGTTCTTT
1._GC-05-82-2-33
AACCCCACGGGGCCCCCCCCGGTTCTTT
2._GC-05-82-2-33
AACCCCACGGGGCCCCCCCCGGTTCTTT
3._GC-05-82-2-33
AACCCCACGGGGCC_CCCCGGTTCTTT
4._GC-05-82-2-33
AACCCCAC_GGCCCCCCCCGGTTCTTT
5._IMC_67
AACCCCAC____CCCCGG_CT_
6._IMC_67
AACCCCAC____CCCCGG_CT_
7._IMC_67
AACCCCAC____CCCCGG_CT_
8._IMC_67
AACCCCAC____CCCCGG_CT_
9._IMC_67
AACCCCAC____CCCCGG_CT_
10._IMC_67
AACCCCAC____CCCCGG_CT_
11._IMC_67
AACCCCAC____CCCCGG_CT_
12._IMC_67
AACCCCAC____CCCCGG_CT_
13._IMC_67
AACCCCAC____CCCCGG_CT_
14._RUQ_1056
AACCCCAC____CCCCGG_CT_
15._IMC_67
AACCCCAC____CCCCGG_CT_
16._RUQ_1056
__CCAC__TT_CC__TTTT_
17._RUQ_1056
___AC__TT_______
18._IMC67
___AC____CC___CC_
19._GC-05-82-2-33
AACC_ACGGGG_GGGG_GGAAAGAA
20._GC-05-82-2-33
AACC_ACGGGG_GGGG_GGAAAGAA
21._RUQ_1056
AACC_ACGGGG_GGGG_GGAAAGAA
22._IMC_67_Fld#_152A_Plt#_1
AACC_ACGGGG_GGGG_GGAAAGAA
23._IMC_67_Fld#_152B_Plt#_4
AACC_ACGGGG_GGGG_GGAAAGAG
 1516171819202122232425262728
_Input profile
AAAAGGCGCCGGCTAATTGGTTAACCCC
1._GC-05-82-2-33
AAAAGGCGCCGGCTAATTGGTTAACCCC
2._GC-05-82-2-33
AAAAGGCGCCGGCTAATTGGTT_CCCC
3._GC-05-82-2-33
AAAAGGCGCCGGCTAATTGGTTAACCCC
4._GC-05-82-2-33
AAAAGGCGCCGGCTAATTGGTT_CCCC
5._IMC_67
__GG__GG____TTAA_CC
6._IMC_67
__GG__GG____TTAA_CC
7._IMC_67
__GG__GG____TTAA_CC
8._IMC_67
__GG__GG____TTAA_CC
9._IMC_67
__GG__GG____TTAA_CC
10._IMC_67
__GG__GG____TTAA_CC
11._IMC_67
__GG__GG____TT__CC
12._IMC_67
__GG__GG____TT__CC
13._IMC_67
__GG__GG____TTAA_CC
14._RUQ_1056
__GG__GG____TTAA_CC
15._IMC_67
__GG__GG____TTAA_CC
16._RUQ_1056
____CC____GG_AACCCC
17._RUQ_1056
__GGTT_________CC
18._IMC67
____GG_CT__GG_ATCCCG
19._GC-05-82-2-33
TTAAGGCG_GGAGAAAAGGTTAAGGGG
20._GC-05-82-2-33
TTAAGGCG_GGAGAAAAGGTTAAGGGG
21._RUQ_1056
TTAAGGCG_GGAGAAAAGGTTAAGGGG
22._IMC_67_Fld#_152A_Plt#_1
TTAAGGCG_GGAGAAAAGGTTAAGGGG
23._IMC_67_Fld#_152B_Plt#_4
AAACGGGG_CGGGAAAGGGAAAACCGG
 2930313233343536373839404142
_Input profile
AATTGGGGGGCCAAGTGGTTAGCCGGCC
1._GC-05-82-2-33
AATTGGGGGGCCAAGTGGTTAGCCGGCC
2._GC-05-82-2-33
AATTGGGGGGCCAAGTGGTTAGCCGGCC
3._GC-05-82-2-33
AATTGGGGGGCCAAGTGGTTAGCCGGCC
4._GC-05-82-2-33
AATTGGGGGGCCAAGTGGTTAGCCGGCC
5._IMC_67
AA___GG_AAGT__AG___
6._IMC_67
AA___GG_AAGT__AG___
7._IMC_67
AA___GG_AAGT__AG___
8._IMC_67
AA___GG_AAGT__AG___
9._IMC_67
AA___GG_AAGT__AG___
10._IMC_67
AA___GG_AAGT__AG___
11._IMC_67
AA___GG_AAGT__AG___
12._IMC_67
AA___GG_AAGT__AG___
13._IMC_67
AA___GG_AAGT__AG___
14._RUQ_1056
AA___GG_AGGT__AG___
15._IMC_67
AA___GG_AGGT__AG___
16._RUQ_1056
___GGCGCCAAGT__AGCC__
17._RUQ_1056
____GG_AA____CC__
18._IMC67
___GGGG____GT_CC__
19._GC-05-82-2-33
AAAACCGGCGCCAAACCCAAAGGGGGGG
20._GC-05-82-2-33
AAAACCGGCGCCAAACCCAAAGGGGGGG
21._RUQ_1056
AAAACCGGCGCCAAACCCAAAGGGGGGG
22._IMC_67_Fld#_152A_Plt#_1
AAAACCGGCGCCAAACCCAAAGGGGGGG
23._IMC_67_Fld#_152B_Plt#_4
ATAAAAGGGGACAACCCCAAAAGGGGGG
 4344454647484950515253545556
_Input profile
GGTTTTGGAAAACCCCGGAGGTTTCTCC
1._GC-05-82-2-33
GGTTTTGGAAAACCCCGGAGGTTTCTCC
2._GC-05-82-2-33
GGTTTTGGAAAACCCCGGAGGTTTCTCC
3._GC-05-82-2-33
GGTTTTGGAAAACCCCGGAGGTTTCTCC
4._GC-05-82-2-33
GGTTTTGGAAAACCCCGGAGGTTTCTCC
5._IMC_67
__TT_________CTCC
6._IMC_67
__TT_________CTCC
7._IMC_67
__TT_________CTCC
8._IMC_67
__TT_________CTCC
9._IMC_67
__TT_________CTCC
10._IMC_67
__TT_________CTCC
11._IMC_67
__TT_________CTCC
12._IMC_67
__TT_________CTCC
13._IMC_67
__TT_________CTCC
14._RUQ_1056
__TT_________CTCC
15._IMC_67
__TT_________CTCC
16._RUQ_1056
GGTT__AA______TTCT_
17._RUQ_1056
____AA_________
18._IMC67
_TT_AA________CT_
19._GC-05-82-2-33
CC_AA_AAAAGG_GGAGACAAAGGG
20._GC-05-82-2-33
CC_AA_AAAAGG_GGAGACAAAGGG
21._RUQ_1056
CC_AA_AAAAGG_GGAGACAAAGGG
22._IMC_67_Fld#_152A_Plt#_1
CC_AA_AAAAGG_GGAGACAAAGGG
23._IMC_67_Fld#_152B_Plt#_4
CC_AA_AGAGAG_GGAGACGGAAGG
 5758596061626364656667686970
_Input profile
TTGGCGCCTTACGGGGCCAGGTGGGGTT
1._GC-05-82-2-33
TTGGCGCCTTACGGGGCCAGGTGGGGTT
2._GC-05-82-2-33
TT_CGCCTTACGGGGCCAGGTGGGGTT
3._GC-05-82-2-33
TTGGCGCCTTACGGGGCCAGGTGGGGTT
4._GC-05-82-2-33
TTGGCGCCTTACGGGGCCAGGTGGGGTT
5._IMC_67
__CG_TTACGG_CCAGGTGG__
6._IMC_67
__CG_TTACGG_CCAGGTGG__
7._IMC_67
__CG_TTACGG_CCAGGTGG__
8._IMC_67
__CG_TTACGG_CCAGGTGG__
9._IMC_67
__CG_TTACGG_CCAGGTGG__
10._IMC_67
__CG_TTACGG_CCAGGTGG__
11._IMC_67
__CG_TTACGG_CCAGGTGG__
12._IMC_67
__CG_TTACGG_CCAGGTGG__
13._IMC_67
__CG_TTACGG_CCAGGTGG__
14._RUQ_1056
__CG_TTACGG_CCAGGTGG__
15._IMC_67
__CG_TTACGG_CCAGGTGG__
16._RUQ_1056
TT-CGCCTTAC_GGCCAGGTGGGG_
17._RUQ_1056
_GG______CCAG_GGGG_
18._IMC67
__GGCC_AC_GGAAAA____
19._GC-05-82-2-33
AAGGCGGGAAACGGGGCCAGACCCGG_
20._GC-05-82-2-33
AAGGCGGGAAACGGGGCCAGACCCGG_
21._RUQ_1056
AAGGCGGGAAACGGGGCCAGACCCGG_
22._IMC_67_Fld#_152A_Plt#_1
AAGGCGGGAAACGGGGCCAGACCCGG_
23._IMC_67_Fld#_152B_Plt#_4
AAGGGGGGAGCCCGGGACGGCCCCAA_
 7172737475767778798081828384
_Input profile
CGAACCAAAAACACAGACGGCCATCCCC
1._GC-05-82-2-33
CG_CCAA_ACACAGACGGCCATCCCC
2._GC-05-82-2-33
CGAACCAAAAACACAGACGGCCATCCCC
3._GC-05-82-2-33
_AACCAAAAACACAGACGGCCATCCCC
4._GC-05-82-2-33
CGAACCAAAAACACAGACGGCCATCCCC
5._IMC_67
_AACC_____ACGG___CC
6._IMC_67
_AACC_____ACGG___CC
7._IMC_67
_AACC_____ACGG___CC
8._IMC_67
_AACC_____ACGG___CC
9._IMC_67
_AACC_____ACGG___CC
10._IMC_67
_AACC_____ACGG___CC
11._IMC_67
_AACC_____ACGG___CC
12._IMC_67
_AACC_____ACGG___CC
13._IMC_67
__CC_____ACGG___CC
14._RUQ_1056
_AACC_____ACGG___CC
15._IMC_67
_AACC_____ACGG___CC
16._RUQ_1056
________ACGG__CCCC
17._RUQ_1056
_AA______ACGG__CC_
18._IMC67
CG________CG____
19._GC-05-82-2-33
__GGAAAAACAC_ACCCGGATCCGG
20._GC-05-82-2-33
__GGAAAAACAC_ACCCGGATCCGG
21._RUQ_1056
__GGAAAAACAC_ACCCGGATCCGG
22._IMC_67_Fld#_152A_Plt#_1
__GGAAAAACAC_ACCCGGATCCGG
23._IMC_67_Fld#_152B_Plt#_4
__AACCGGAACC_CCGGGGATCCAA
 85868788899091929394    
_Input profile
TTCCCTAACCCTGTCTTTGGX_XX_XX_XX_X
1._GC-05-82-2-33
TTCCCTAACCCTGTCT__X_XX_XX_XX_X
2._GC-05-82-2-33
TTCCCTAACCCTGTCT__X_XX_XX_XX_X
3._GC-05-82-2-33
TTCCCTAACCCTGTCT__X_XX_XX_XX_X
4._GC-05-82-2-33
TTCCCTAACCCTGTCT__X_XX_XX_XX_X
5._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
6._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
7._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
8._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
9._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
10._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
11._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
12._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
13._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
14._RUQ_1056
TTCC_AA_CTGTCT__X_XX_XX_XX_X
15._IMC_67
TTCC_AA_CTGTCT__X_XX_XX_XX_X
16._RUQ_1056
___AACCCTGT___X_XX_XX_XX_X
17._RUQ_1056
_CC__CC_GT___X_XX_XX_XX_X
18._IMC67
CC_________X_XX_XX_XX_X
19._GC-05-82-2-33
AA_AG__AGACAGAAGGX_XX_XX_XX_X
20._GC-05-82-2-33
AA_AG__AGACAGAAGGX_XX_XX_XX_X
21._RUQ_1056
AA_AG__AGACAGAAGGX_XX_XX_XX_X
22._IMC_67_Fld#_152A_Plt#_1
AA_AG__AGACAGAAGGX_XX_XX_XX_X
23._IMC_67_Fld#_152B_Plt#_4
AG_AG__AGAAAGAAGGX_XX_XX_XX_X

Input profile: IMC_67 GC-05-082-2-33

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._IMC_67 GC-05-82-2-33

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

2._IMC_67 GC-05-82-2-33

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

3._IMC_67 GC-05-82-2-33

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

4._IMC_67 GC-05-82-2-33

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

5._IMC_67

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

6._IMC_67

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

7._IMC_67

identical
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._IMC_67

identical
40 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

9._IMC_67

identical
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

10._IMC_67

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

11._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

13._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

14._IMC_67 RUQ_1056

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._IMC_67

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

16._IMC_67 RUQ_1056

95.2 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._IMC_67 RUQ_1056

90.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

18._IMC_67 IMC67

70 %
25 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

50.6 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

50.6 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

50.6 %
80 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

40 %
80 shared markers

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USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240