SNP Profiles of SPEC-54/1   View Data

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 1234567891011121314
_Input profile
AAAAGGGGCCCCCCCCGGTTCCTTAACC
1._GC-05-162-4-15
AAAAGGGGCCCCCCCCGGTTCCTTAACC
2._GC-05-162-4-15
AAAAGGGGCCCCCCCCGGTTCCTTAACC
3._GC-05-063-2-14
AAAAGGGGCCCCCCCCGGTTCCTTAACC
4._GC-05-162-4-15
AAAAGGGGCCCCCCCCGGTTCCTTAACC
5._GC-05-162-4-15
AAAAGGGGCCCCCCCCGGTTCCTTAACC
6._GC-05-063-2-14
AAAAGGGGCCCCCCCCGGTTCCTTAACC
7._GC-05-162-4-15
AAAAGGGGCCCCCCCCGGTTCCTTAACC
8._GC-05-063-2-14
AAAAGGGGCCCCCCCCGGTTCCTTAACC
9._SPEC_54_/1
AAAA____CCCCGG_CC___
10._SPEC_54_/1
AAAA____CCCCGG_CC___
11._SPEC_54_/1
AAAA____CCCCGG_CC___
12._SPEC_54_/1
AAAA____CCCCGG_CC___
13._SPEC_54_/1
AAAA____CCCCGG_CC___
14._SPEC_54_/1
AAAA____CCCCGG_CC___
15._SPEC_54_/1
AAAA____CCCCGG_CC___
16._SPEC_54_/1
AAAA____CCCCGG_CC___
17._SPEC_54_/1
AAAA____CCCCGG_CC___
18._GC-05-063-2-14
AAAAGGGGCCCCCCCCGGTTCCTTAACC
19._SPEC_54_/1
AAAA____CCCCGG_CC___
20._RUQ_50
_AA__TT_CC__TTCC___
21._RUQ_50
AAAA____CCCCGG_CC___
22._RUQ_50
_AA__TT_________
 1516171819202122232425262728
_Input profile
GGGGCCGGTTAATTGGTTAACCGGAATT
1._GC-05-162-4-15
GGGGCCGGTTAATTGGTTAACCGGAATT
2._GC-05-162-4-15
GGGGCCGGTTAATTGGTTAACCGGAATT
3._GC-05-063-2-14
GGGGCCGGTTAATTGGTTAACCGGAATT
4._GC-05-162-4-15
GGGGCCGGTTAATTGGTTAACCGGAATT
5._GC-05-162-4-15
GGGGCCGGTTAATTGGTTAACCGGAATT
6._GC-05-063-2-14
GGGGCCGGTTAATTGGTTAACCGGAATT
7._GC-05-162-4-15
GGGGCCGGTTAATTGGTTAACCGGAATT
8._GC-05-063-2-14
GGGGCCGGTTAATTGGTTAACCGGAATT
9._SPEC_54_/1
GG__GG____TTAA_GGAA_
10._SPEC_54_/1
GG__GG____TTAA_GGAA_
11._SPEC_54_/1
GG__GG____TTAA_GGAA_
12._SPEC_54_/1
GG__GG____TTAA_GGAA_
13._SPEC_54_/1
GG__GG____TTAA_GGAA_
14._SPEC_54_/1
GG__GG____TTAA_GGAA_
15._SPEC_54_/1
GG__GG____TTAA_GGAA_
16._SPEC_54_/1
GG__GG____TTAA_GGAA_
17._SPEC_54_/1
GG__GG____TTAA_GGAA_
18._GC-05-063-2-14
GGGGCCGGTTAATTGGTTAACCGGAATT
19._SPEC_54_/1
GG__GG____TTAA_GGAA_
20._RUQ_50
__CC____GG_AACCGG__
21._RUQ_50
GG__GG____TTAA_GGAA_
22._RUQ_50
GGTT_________GG__
 2930313233343536373839404142
_Input profile
GGAAGGCCAATTGGTTAACCAACCGGTT
1._GC-05-162-4-15
GGAAGGCCAATTGGTTAACCAACCGGTT
2._GC-05-162-4-15
GGAAGGCCAATTGGTTAACCAACCGGTT
3._GC-05-063-2-14
GGAAGGCCAATTGGTTAACCAACCGGTT
4._GC-05-162-4-15
GGAAGGCCAATTGGTTAACCAACCGGTT
5._GC-05-162-4-15
GGAAGGCCAATTGGTTAACCAACCGGTT
6._GC-05-063-2-14
GGAAGGCCAATTGGTTAACCAACCGGTT
7._GC-05-162-4-15
GGAAGGCCAATTGGTTAACCAACCGGTT
8._GC-05-063-2-14
GGAAGGCCAATTGGTTAACCAACCGGTT
9._SPEC_54_/1
__GG_AATT__AA____TT
10._SPEC_54_/1
__GG_AATT__AA____TT
11._SPEC_54_/1
__GG_AATT__AA____TT
12._SPEC_54_/1
__GG_AATT__AA____TT
13._SPEC_54_/1
__GG_AATT__AA____TT
14._SPEC_54_/1
__GG_AATT__AA____TT
15._SPEC_54_/1
__GG_AATT__AA____TT
16._SPEC_54_/1
__GG_AATT__AA____TT
17._SPEC_54_/1
__GG_AATT__AA____TT
18._GC-05-063-2-14
GGAAGGCCAATTGGTTAACCAACCGGTT
19._SPEC_54_/1
__GG_AATT__AA____TT
20._RUQ_50
_AAGGCCAATT__AACC__GG_
21._RUQ_50
__GG_AAGT__AG____TT
22._RUQ_50
__GG_AA____CC____
 4344454647484950515253545556
_Input profile
AAGGAACCCCGGAATTTTCCCCTTGGCC
1._GC-05-162-4-15
AAGGAACCCCGGAATTTTCCCCTTGGCC
2._GC-05-162-4-15
AAGGAACCCCGGAATTTTCCCCTTGGCC
3._GC-05-063-2-14
AAGGAACCCCGGAATTTTCCCCTTGGCC
4._GC-05-162-4-15
AAGGAACCCCGGAATTTTCCCCTTGGCC
5._GC-05-162-4-15
AAGGAACCCCGGAATTTTCCCCTTGGCC
6._GC-05-063-2-14
AAGGAACCCCGGAATTTTCCCCTTGGCC
7._GC-05-162-4-15
AAGGAACCCCGGAATTTTCCCCTT_CC
8._GC-05-063-2-14
AAGGAACCCCGGAATTTTCCCCTT_CC
9._SPEC_54_/1
_________CCCC__CC
10._SPEC_54_/1
_________CCCC__CC
11._SPEC_54_/1
_________CCCC__CC
12._SPEC_54_/1
_________CCCC__CC
13._SPEC_54_/1
_________CCCC__CC
14._SPEC_54_/1
_________CCCC__CC
15._SPEC_54_/1
_________CCCC__CC
16._SPEC_54_/1
_________CCCC__CC
17._SPEC_54_/1
_________CCCC__CC
18._GC-05-063-2-14
AAGGAACCCCGGAATTTTCTCCTTGGCC
19._SPEC_54_/1
_________CTCC__CC
20._RUQ_50
_GG______TTCC_TTGGCC
21._RUQ_50
_________CCCC__CC
22._RUQ_50
_GG__________GG_
 5758596061626364656667686970
_Input profile
TTCTAAGGGGAAAATTGGGGTTCCAATT
1._GC-05-162-4-15
TTCTAAGGGGAAAATTGGGGTTCCAATT
2._GC-05-162-4-15
TTCTAAGGGGAAAATTGGGGTTCCAATT
3._GC-05-063-2-14
TTCTAAGGGGAAAATTGGGGTTCCAATT
4._GC-05-162-4-15
TTCTAAGGGGAAAATTGGGGTTCCAATT
5._GC-05-162-4-15
TTCTAAGGGGAAAATTGGGGTTCCAATT
6._GC-05-063-2-14
TTCTAAGGGGAAAATTGGGGTTCCAATT
7._GC-05-162-4-15
TTCTAAGGGGAAAATTGGGGTTCCAATT
8._GC-05-063-2-14
TTCTAAGGGGAAAATTGGGGTTCCAATT
9._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
10._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
11._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
12._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
13._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
14._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
15._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
16._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
17._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
18._GC-05-063-2-14
TTCTAAGGGGAAAATTGGGGTTCCAATT
19._SPEC_54_/1
_CTAAGG_AAAATTGG___AATT
20._RUQ_50
TTCTAA_GGAAAATTGGGG____
21._RUQ_50
_CTAAGG_AAAATTGG___AATT
22._RUQ_50
_____AAAA_GGGG__AA_
 7172737475767778798081828384
_Input profile
AAAAAAAAAACCCCCCAAAACCCCTTTT
1._GC-05-162-4-15
AAAAAAAAAACCCCCCAAAACCCCTTTT
2._GC-05-162-4-15
AAAAAAAAAACCCCCCAAAACCCCTTTT
3._GC-05-063-2-14
AAAAAAAAAACCCCCCAAAACCCCTTTT
4._GC-05-162-4-15
AAAAAAAAAACCCCCCAAAACCCCTTTT
5._GC-05-162-4-15
AAAAAAAAAACCCCCCAAAACCCCTTTT
6._GC-05-063-2-14
_AAAAAAAACCCCCCAAAACCCCTTTT
7._GC-05-162-4-15
AAAAAAAAAACCCCCCAAAACCCCTTTT
8._GC-05-063-2-14
_AAAAAAAACCCCCCAAAACCCCTTTT
9._SPEC_54_/1
_____CCCC___CCCCTT_
10._SPEC_54_/1
_____CCCC___CCCCTT_
11._SPEC_54_/1
_____CCCC___CCCCTT_
12._SPEC_54_/1
_____CCCC___CCCCTT_
13._SPEC_54_/1
_____CCCC___CCCCTT_
14._SPEC_54_/1
_____CCCC___CCCCTT_
15._SPEC_54_/1
_____CCCC___CCCCTT_
16._SPEC_54_/1
_____CCCC___CCCCTT_
17._SPEC_54_/1
_____CCCC___CCCCTT_
18._GC-05-063-2-14
AAAAAAAAAACCCCCCAAAACCCCTTTT
19._SPEC_54_/1
_____CCCC___CCCCTT_
20._RUQ_50
_____CCCC__AACC___
21._RUQ_50
_____CCCC___CCCCTT_
22._RUQ_50
_____ACCC__AA__TT_
 85868788899091       
_Input profile
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
6._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
7._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
8._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
9._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
10._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
11._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
12._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
13._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
14._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
15._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
16._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
17._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
18._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
19._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
20._RUQ_50
AACCTTTT___X_XX_XX_XX_XX_XX_XX_X
21._RUQ_50
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
22._RUQ_50
_CC_TT___X_XX_XX_XX_XX_XX_XX_X

Input profile: SPEC_54_/1 GC-05-063-2-14

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

1._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

3._SPEC_54_/1 GC-05-063-2-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._SPEC_54_/1 GC-05-063-2-14

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

7._SPEC_54_/1 GC-05-162-4-15

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._SPEC_54_/1 GC-05-063-2-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

9._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 3
 Dapeng Zhang, 2016

10._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 1 > FP
 Dapeng Zhang, 2016

11._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 5
 Dapeng Zhang, 2016

12._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 4
 Dapeng Zhang, 2016

13._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 2
 Dapeng Zhang, 2016

14._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 4 > FP
 Dapeng Zhang, 2016

15._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 3 > FP
 Dapeng Zhang, 2016

16._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 2 > FP
 Dapeng Zhang, 2016

17._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 1 > FP
 Dapeng Zhang, 2016

18._SPEC_54_/1 GC-05-063-2-14

99.5 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._SPEC_54_/1

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._SPEC_54_/1 RUQ_50

97.6 %
41 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._SPEC_54_/1 RUQ_50

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._SPEC_54_/1 RUQ_50

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP591 3TcSNP42 4TcSNP418 5TcSNP702
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP1062
16TcSNP836 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1270 43TcSNP606 44TcSNP329 45TcSNP689
46TcSNP944 47TcSNP1242 48TcSNP1383 49TcSNP547 50TcSNP776
51TcSNP1309 52TcSNP151 53TcSNP1520 54TcSNP799 55TcSNP899
56TcSNP226 57TcSNP1439 58TcSNP1442 59TcSNP193 60TcSNP25
61TcSNP364 62TcSNP144 63TcSNP230 64TcSNP560 65TcSNP723
66TcSNP731 67TcSNP701 68TcSNP1041 69TcSNP645 70TcSNP917
71Tcm003s01336581 72Tcm003s07402719 73Tcm001s00947643 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240