SNP Profiles of "SPEC 54 /1"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-063-2-14
______GGGGTT___GG______CCTTCCTT___
2. _GC-05-063-2-14
______GGGGTT___GG______CCTTCCTT___
3. _GC-05-063-2-14
______GGGGTT___GG______CCTTCCTT___
4. _GC-05-063-2-14
______GGGGTT___GG______CCTTCCTT___
5. _GC-05-063-2-14
______GGGGTT___GG______CCTTCCTT___
6. _GC-05-162-4-15
______GGGGTT___GG______CCTTCCTT___
7. _GC-05-162-4-15
______GGGGTT___GG______CCTTCCTT___
8. _GC-05-162-4-15
______GGGGTT___GG______CCTTCCTT___
9. _GC-05-162-4-15
______GGGGTT___GG______CCTTCCTT___
10. _GC-05-162-4-15
______GGGGTT___GG______CCTTCCTT___
11. _5214_5
______GG___TT___________________________
12. _5214_1_>_FP
______GG___TT___________________________
13. _5214_2_>_FP
______GG___TT___________________________
14. _5214_3_>_FP
______GG___TT___________________________
15. _5214_4_>_FP
______GG___TT___________________________
16. _5415_2
______GG___TT___________________________
17. _5415_3
______GG___TT___________________________
18. _5415_4
______GG___TT___________________________
19. _5415_5
______GG___TT___________________________
20. _5415_1_>_FP
______GG___TT___________________________
21. _RUQ_50
CCCC_________TT___CCGG____________TT
22. _RUQ_50
______________________________TTCC______
23. _RUQ_50
______GG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-063-2-14
___AATTCCAAGG______AA___CCAAGGTT
2. _GC-05-063-2-14
___AATTCCAAGG______AA___CCAAGGTT
3. _GC-05-063-2-14
___AATTCCAAGG______AA___CCAAGGTT
4. _GC-05-063-2-14
___AATTCCAAGG______AA___CCAAGGTT
5. _GC-05-063-2-14
___AATTCTAAGG______AA___CCAAGGTT
6. _GC-05-162-4-15
___AATTCCAAGG______AA___CCAAGGTT
7. _GC-05-162-4-15
___AATTCCAAGG______AA___CCAAGGTT
8. _GC-05-162-4-15
___AATTCCAAGG______AA___CCAAGGTT
9. _GC-05-162-4-15
___AATTCCAAGG______AA___CCAAGGTT
10. _GC-05-162-4-15
___AATTCCAAGG______AA___CCAAGGTT
11. _5214_5
___AATTCT____________AA___CCAA___TT
12. _5214_1_>_FP
___AATTCC____________AA___CCAA___TT
13. _5214_2_>_FP
___AATTCC____________AA___CCAA___TT
14. _5214_3_>_FP
___AATTCC____________AA___CCAA___TT
15. _5214_4_>_FP
___AATTCC____________AA___CCAA___TT
16. _5415_2
___AATTCC____________AA___CCAA___TT
17. _5415_3
___AATTCC____________AA___CCAA___TT
18. _5415_4
___AATTCC____________AA___CCAA___TT
19. _5415_5
___AATTCC____________AA___CCAA___TT
20. _5415_1_>_FP
___AATTCC____________AA___CCAA___TT
21. _RUQ_50
TTAA____________CCAA___GG___AA______
22. _RUQ_50
___AATTCC___GG______AA___CCAA___TT
23. _RUQ_50
___AAGTCC____________AA___CCAA___TT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-063-2-14
______AAGG___GGAATTGG___GGAACCAA
2. _GC-05-063-2-14
______AAGG___GGAATTGG___GGAACCAA
3. _GC-05-063-2-14
______AAGG___GGAATTGG___GGAACCAA
4. _GC-05-063-2-14
______AAGG___GGAATTGG___GGAACCAA
5. _GC-05-063-2-14
______AAGG___GGAATTGG___GGAACCAA
6. _GC-05-162-4-15
______AAGG___GGAATTGG___GGAACCAA
7. _GC-05-162-4-15
______AAGG___GGAATTGG___GGAACCAA
8. _GC-05-162-4-15
______AAGG___GGAATTGG___GGAACCAA
9. _GC-05-162-4-15
______AAGG___GGAATTGG___GGAACCAA
10. _GC-05-162-4-15
______AAGG___GGAATTGG___GGAACCAA
11. _5214_5
__________________AA_________GG______AA
12. _5214_1_>_FP
__________________AA_________GG______AA
13. _5214_2_>_FP
__________________AA_________GG______AA
14. _5214_3_>_FP
__________________AA_________GG______AA
15. _5214_4_>_FP
__________________AA_________GG______AA
16. _5415_2
__________________AA_________GG______AA
17. _5415_3
__________________AA_________GG______AA
18. _5415_4
__________________AA_________GG______AA
19. _5415_5
__________________AA_________GG______AA
20. _5415_1_>_FP
__________________AA_________GG______AA
21. _RUQ_50
TTAA___GGAA____________CC____________
22. _RUQ_50
_________GG___GGAA_______________CCAA
23. _RUQ_50
__________________AA_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-063-2-14
___CC___CC______AATTAAGG___AACCAA
2. _GC-05-063-2-14
___CC___CCTT___AATTAAGG___AACCAA
3. _GC-05-063-2-14
___CC___CCTT___AATTAAGG___AACCAA
4. _GC-05-063-2-14
___CC___CCTT___AATTAAGG___AACCAA
5. _GC-05-063-2-14
___CC___CCTT___AATTAAGG___AACCAA
6. _GC-05-162-4-15
___CC___CCTT___AATTAAGG___AACCAA
7. _GC-05-162-4-15
___CC___CCTT___AATTAAGG___AACCAA
8. _GC-05-162-4-15
___CC___CCTT___AATTAAGG___AACCAA
9. _GC-05-162-4-15
___CC___CCTT___AATTAAGG___AACCAA
10. _GC-05-162-4-15
___CC___CCTT___AATTAAGG___AACCAA
11. _5214_5
_________CCTT______TT___GG___AA______
12. _5214_1_>_FP
_________CC_________TT___GG___AA______
13. _5214_2_>_FP
_________CCTT______TT___GG___AA______
14. _5214_3_>_FP
_________CCTT______TT___GG___AA______
15. _5214_4_>_FP
_________CCTT______TT___GG___AA______
16. _5415_2
_________CCTT______TT___GG___AA______
17. _5415_3
_________CCTT______TT___GG___AA______
18. _5415_4
_________CCTT______TT___GG___AA______
19. _5415_5
_________CCTT______TT___GG___AA______
20. _5415_1_>_FP
_________CCTT______TT___GG___AA______
21. _RUQ_50
CC___TTAC___GG_________GGTTAACC___
22. _RUQ_50
_________CCTT______TT___GG___AACC___
23. _RUQ_50
_________CCTT______TT___GG___AA______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-063-2-14
CC_________AAAA___AATTCCGGGG___TT
2. _GC-05-063-2-14
CC_________AAAA___AATTCCGGGG___TT
3. _GC-05-063-2-14
CC_________AAAA___AATTCCGGGG___TT
4. _GC-05-063-2-14
CC_________AAAA___AATTCCGGGG___TT
5. _GC-05-063-2-14
CC_________AAAA___AATTCCGGGG___TT
6. _GC-05-162-4-15
CC_________AAAA___AATTCCGGGG___TT
7. _GC-05-162-4-15
CC_________AAAA___AATTCCGGGG___TT
8. _GC-05-162-4-15
CC_________AAAA___AATTCCGGGG___TT
9. _GC-05-162-4-15
CC_________AAAA___AATTCCGGGG___TT
10. _GC-05-162-4-15
CC_________AAAA___AATTCCGGGG___TT
11. _5214_5
CC_________AA_______________GG_________
12. _5214_1_>_FP
CC_________AA_______________GG_________
13. _5214_2_>_FP
CC_________AA_______________GG_________
14. _5214_3_>_FP
CC_________AA_______________GG_________
15. _5214_4_>_FP
CC_________AA_______________GG_________
16. _5415_2
CC_________AA_______________GG_________
17. _5415_3
CC_________AA_______________GG_________
18. _5415_4
CC_________AA_______________GG_________
19. _5415_5
CC_________AA_______________GG_________
20. _5415_1_>_FP
CC_________AA_______________GG_________
21. _RUQ_50
___TTAACCAA___GG______TTGGGGTT___
22. _RUQ_50
CC________________________TTGGGG______
23. _RUQ_50
CC_________AA_______________GG_________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-063-2-14
TTTT___AA___GGGGCCCCCCGGTTGGCC
2. _GC-05-063-2-14
TTTT___AA___GGGGCCCCCC___TTGGCC
3. _GC-05-063-2-14
TTTT___AA___GGGGCCCCCCGGTTGGCC
4. _GC-05-063-2-14
TTTT___AA___GGGGCCCCCCGGTTGGCC
5. _GC-05-063-2-14
TTTT___AA___GGGGCCCCCCGGTTGGCC
6. _GC-05-162-4-15
TTTT___AA___GGGGCCCCCCGGTTGGCC
7. _GC-05-162-4-15
TTTT___AA___GGGGCCCCCCGGTTGGCC
8. _GC-05-162-4-15
TTTT___AA___GGGGCCCCCCGGTTGGCC
9. _GC-05-162-4-15
TTTT___AA___GGGGCCCCCC___TTGGCC
10. _GC-05-162-4-15
TTTT___AA___GGGGCCCCCCGGTTGGCC
11. _5214_5
__________________GG___CC______TTGG___
12. _5214_1_>_FP
__________________GG___CC______TTGG___
13. _5214_2_>_FP
__________________GG___CC______TTGG___
14. _5214_3_>_FP
__________________GG___CC______TTGG___
15. _5214_4_>_FP
__________________GG___CC______TTGG___
16. _5415_2
__________________GG___CC______TTGG___
17. _5415_3
__________________GG___CC______TTGG___
18. _5415_4
__________________GG___CC______TTGG___
19. _5415_5
__________________GG___CC______TTGG___
20. _5415_1_>_FP
__________________GG___CC______TTGG___
21. _RUQ_50
______TTAATTTTGG_________GG_________
22. _RUQ_50
___TT___AA______GGCCCC___GG_________
23. _RUQ_50
__________________GG___CC______TTGG___
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-05-063-2-14
___AACCAACC______TTCC___CCGGGGAA
2. _GC-05-063-2-14
___AACCAACC______TTCC___CCGGGGAA
3. _GC-05-063-2-14
___AACCAACC______TTCC___CCGGGGAA
4. _GC-05-063-2-14
___AACCAACC______TTCC___CCGGGGAA
5. _GC-05-063-2-14
___AACCAACC______TTCC___CCGGGGAA
6. _GC-05-162-4-15
___AACCAACC______TTCC___CCGGGGAA
7. _GC-05-162-4-15
___AACCAACC______TTCC___CCGGGGAA
8. _GC-05-162-4-15
___AACCAACC______TTCC___CCGGGGAA
9. _GC-05-162-4-15
___AACCAACC______TTCC___CCGGGGAA
10. _GC-05-162-4-15
___AACCAACC______TTCC___CCGGGGAA
11. _5214_5
___AACCAA__________________CCGG___AA
12. _5214_1_>_FP
___AACCAA__________________CCGG___AA
13. _5214_2_>_FP
___AACCAA__________________CCGG___AA
14. _5214_3_>_FP
___AACCAA__________________CCGG___AA
15. _5214_4_>_FP
___AACCAA__________________CCGG___AA
16. _5415_2
___AACCAA__________________CCGG___AA
17. _5415_3
___AACCAA__________________CCGG___AA
18. _5415_4
___AACCAA__________________CCGG___AA
19. _5415_5
___AACCAA__________________CCGG___AA
20. _5415_1_>_FP
___AACCAA__________________CCGG___AA
21. _RUQ_50
CC______AACCTTAA______CC___GG______
22. _RUQ_50
_________AACC_______________CC___GG___
23. _RUQ_50
___AACCAA__________________CCGG___AA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-05-063-2-14
CCAA______TTTTTTCCGG_________CCTT
2. _GC-05-063-2-14
CCAA___TTTTTTTTCCGG_________CCTT
3. _GC-05-063-2-14
CCAA___TTTTTTTTCCGG_________CCTT
4. _GC-05-063-2-14
CCAA___TTTTTTTTCCGG_________CCTT
5. _GC-05-063-2-14
CCAA___TTTTTTTTCCGG_________CCTT
6. _GC-05-162-4-15
CCAA___TTTTTTTTCCGG_________CCTT
7. _GC-05-162-4-15
CCAA___TTTTTTTTCCGG_________CCTT
8. _GC-05-162-4-15
CCAA___TTTTTTTTCCGG_________CCTT
9. _GC-05-162-4-15
CCAA___TTTTTTTTCCGG_________CCTT
10. _GC-05-162-4-15
CCAA___TTTTTTTTCCGG_________CCTT
11. _5214_5
____________TT______CC_______________TT
12. _5214_1_>_FP
____________TT______CC_______________TT
13. _5214_2_>_FP
____________TT______CC_______________TT
14. _5214_3_>_FP
____________TT______CC_______________TT
15. _5214_4_>_FP
____________TT______CC_______________TT
16. _5415_2
____________TT______CC_______________TT
17. _5415_3
____________TT______CC_______________TT
18. _5415_4
____________TT______CC_______________TT
19. _5415_5
____________TT______CC_______________TT
20. _5415_1_>_FP
____________TT______CC_______________TT
21. _RUQ_50
______CC___TT____________TTAACC___TT
22. _RUQ_50
___AA___TT___________________________TT
23. _RUQ_50
____________TT______CC_______________TT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-05-063-2-14
TT______TT___GG______TTTTCTCCAACC
2. _GC-05-063-2-14
TT______TT___GG______TTTTCTCCAACC
3. _GC-05-063-2-14
TT______TT___GG______TTTTCTCCAACC
4. _GC-05-063-2-14
TT______TT___GG______TTTTCTCCAACC
5. _GC-05-063-2-14
TT______TT___GG______TTTTCTCCAACC
6. _GC-05-162-4-15
TT______TT___GG______TTTTCTCCAACC
7. _GC-05-162-4-15
TT______TT___GG______TTTTCTCCAACC
8. _GC-05-162-4-15
TT______TT___GG______TTTTCTCCAACC
9. _GC-05-162-4-15
TT______TT___GG______TTTTCTCCAACC
10. _GC-05-162-4-15
TT______TTCCGG______TTTTCTCCAACC
11. _5214_5
TT_____________________TT___CTCCAACC
12. _5214_1_>_FP
TT_____________________TT___CTCCAACC
13. _5214_2_>_FP
TT_____________________TT___CTCCAACC
14. _5214_3_>_FP
TT_____________________TT___CTCCAACC
15. _5214_4_>_FP
TT_____________________TT___CTCCAACC
16. _5415_2
TT_____________________TT___CTCCAACC
17. _5415_3
TT_____________________TT___CTCCAACC
18. _5415_4
TT_____________________TT___CTCCAACC
19. _5415_5
TT_________CC_________TT___CTCCAACC
20. _5415_1_>_FP
TT_____________________TT___CTCCAACC
21. _RUQ_50
___GGTT_________GGGG_________CC______
22. _RUQ_50
_________TT_______________TTCTCCAA___
23. _RUQ_50
TT_________CC_________TT___CTCCAGCC
 127 128 129 130 131 132 133        
1. _GC-05-063-2-14
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
2. _GC-05-063-2-14
______AAAA___AAAAX_XX_XX_XX_XX_XX_XX_X
3. _GC-05-063-2-14
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
4. _GC-05-063-2-14
______AAAA___AAAAX_XX_XX_XX_XX_XX_XX_X
5. _GC-05-063-2-14
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
6. _GC-05-162-4-15
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
7. _GC-05-162-4-15
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
8. _GC-05-162-4-15
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
9. _GC-05-162-4-15
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
10. _GC-05-162-4-15
______AAAAAAAAAAX_XX_XX_XX_XX_XX_XX_X
11. _5214_5
_____________________X_XX_XX_XX_XX_XX_XX_X
12. _5214_1_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
13. _5214_2_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
14. _5214_3_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
15. _5214_4_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
16. _5415_2
_____________________X_XX_XX_XX_XX_XX_XX_X
17. _5415_3
_____________________X_XX_XX_XX_XX_XX_XX_X
18. _5415_4
_____________________X_XX_XX_XX_XX_XX_XX_X
19. _5415_5
_____________________X_XX_XX_XX_XX_XX_XX_X
20. _5415_1_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
21. _RUQ_50
TTAA_______________X_XX_XX_XX_XX_XX_XX_X
22. _RUQ_50
_____________________X_XX_XX_XX_XX_XX_XX_X
23. _RUQ_50
_____________________X_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018
2._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018
3._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018
4._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018
5._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 5
Notes: 5
 Mars, 2018
6._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018
7._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 2
Notes: 2
 Mars, 2018
8._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 3
Notes: 3
 Mars, 2018
9._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 4
Notes: 4
 Mars, 2018
10._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 5
Notes: 5
 Mars, 2018
11._SPEC_54_/1
Location: 5214 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
12._SPEC_54_/1
Location: 5214 1 > FP
 Dapeng Zhang, 2016
13._SPEC_54_/1
Location: 5214 2 > FP
 Dapeng Zhang, 2016
14._SPEC_54_/1
Location: 5214 3 > FP
 Dapeng Zhang, 2016
15._SPEC_54_/1
Location: 5214 4 > FP
 Dapeng Zhang, 2016
16._SPEC_54_/1
Location: 5415 2
 Dapeng Zhang, 2016
17._SPEC_54_/1
Location: 5415 3
 Dapeng Zhang, 2016
18._SPEC_54_/1
Location: 5415 4
 Dapeng Zhang, 2016
19._SPEC_54_/1
Location: 5415 5
 Dapeng Zhang, 2016
20._SPEC_54_/1
Location: 5415 1 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

21._SPEC_54_/1 RUQ 50
 Lambert Motilal, 2023
22._SPEC_54_/1 RUQ 50
 Dapeng Zhang, 2014
23._SPEC_54_/1 RUQ 50
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP606 57TcSNP619 58TcSNP640 59TcSNP642 60TcSNP644
61TcSNP645 62TcSNP653 63TcSNP660 64TcSNP689 65TcSNP701
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP872 78TcSNP878 79TcSNP891 80TcSNP894
81TcSNP899 82TcSNP917 83TcSNP929 84TcSNP944 85TcSNP945
86TcSNP953 87TcSNP994 88TcSNP998 89TcSNP999 90TcSNP1010
91TcSNP1019 92TcSNP1034 93TcSNP1041 94TcSNP1053 95TcSNP1060
96TcSNP1062 97TcSNP1063 98TcSNP1075 99TcSNP1096 100TcSNP1111
101TcSNP1112 102TcSNP1126 103TcSNP1144 104TcSNP1149 105TcSNP1156
106TcSNP1165 107TcSNP1175 108TcSNP1205 109TcSNP1230 110TcSNP1237
111TcSNP1242 112TcSNP1253 113TcSNP1270 114TcSNP1275 115TcSNP1293
116TcSNP1309 117TcSNP1350 118TcSNP1383 119TcSNP1401 120TcSNP1404
121TcSNP1414 122TcSNP1439 123TcSNP1442 124TcSNP1458 125TcSNP1484
126TcSNP1520 127TcSNP1524 128TcSNP1527 129Tcm001s00947643 130Tcm002s20575712
131Tcm003s01336581 132Tcm003s07402719 133Tcm006s26664133