SNP Profiles of "SPEC 54 /1"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-063-2-14
GGGGTTGGCCTTCCTTAATTCCAAGGAA
2. _GC-05-162-4-15
GGGGTTGGCCTTCCTTAATTCCAAGGAA
3. _5214_1_>_FP
GG___TT_______________AATTCC______AA
4. _5415_3
GG___TT_______________AATTCC______AA
5. _GC-05-063-2-14
GGGGTTGGCCTTCCTTAATTCCAAGGAA
6. _GC-05-162-4-15
GGGGTTGGCCTTCCTTAATTCCAAGGAA
7. _5214_4_>_FP
GG___TT_______________AATTCC______AA
8. _5415_1_>_FP
GG___TT_______________AATTCC______AA
9. _GC-05-063-2-14
GGGGTTGGCCTTCCTTAATTCTAAGGAA
10. _GC-05-162-4-15
GGGGTTGGCCTTCCTTAATTCCAAGGAA
11. _5214_2_>_FP
GG___TT_______________AATTCC______AA
12. _5415_4
GG___TT_______________AATTCC______AA
13. _GC-05-063-2-14
GGGGTTGGCCTTCCTTAATTCCAAGGAA
14. _GC-05-162-4-15
GGGGTTGGCCTTCCTTAATTCCAAGGAA
15. _5214_5
GG___TT_______________AATTCT______AA
16. _5415_2
GG___TT_______________AATTCC______AA
17. _GC-05-063-2-14
GGGGTTGGCCTTCCTTAATTCCAAGGAA
18. _GC-05-162-4-15
GGGGTTGGCCTTCCTTAATTCCAAGGAA
19. _5214_3_>_FP
GG___TT_______________AATTCC______AA
20. _5415_5
GG___TT_______________AATTCC______AA
21. _RUQ_50
GG___TT_______________AAGTCC______AA
22. _RUQ_50
_______________TTCC___AATTCC___GGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-063-2-14
CCAAGGTTAAGGGGAATTGGGGAACCAA
2. _GC-05-162-4-15
CCAAGGTTAAGGGGAATTGGGGAACCAA
3. _5214_1_>_FP
CCAA___TT_________AA______GG______AA
4. _5415_3
CCAA___TT_________AA______GG______AA
5. _GC-05-063-2-14
CCAAGGTTAAGGGGAATTGGGGAACCAA
6. _GC-05-162-4-15
CCAAGGTTAAGGGGAATTGGGGAACCAA
7. _5214_4_>_FP
CCAA___TT_________AA______GG______AA
8. _5415_1_>_FP
CCAA___TT_________AA______GG______AA
9. _GC-05-063-2-14
CCAAGGTTAAGGGGAATTGGGGAACCAA
10. _GC-05-162-4-15
CCAAGGTTAAGGGGAATTGGGGAACCAA
11. _5214_2_>_FP
CCAA___TT_________AA______GG______AA
12. _5415_4
CCAA___TT_________AA______GG______AA
13. _GC-05-063-2-14
CCAAGGTTAAGGGGAATTGGGGAACCAA
14. _GC-05-162-4-15
CCAAGGTTAAGGGGAATTGGGGAACCAA
15. _5214_5
CCAA___TT_________AA______GG______AA
16. _5415_2
CCAA___TT_________AA______GG______AA
17. _GC-05-063-2-14
CCAAGGTTAAGGGGAATTGGGGAACCAA
18. _GC-05-162-4-15
CCAAGGTTAAGGGGAATTGGGGAACCAA
19. _5214_3_>_FP
CCAA___TT_________AA______GG______AA
20. _5415_5
CCAA___TT_________AA______GG______AA
21. _RUQ_50
CCAA___TT_________AA______GG______AA
22. _RUQ_50
CCAA___TT___GGGGAA____________CCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-063-2-14
CCCCTTAATTAAGGAACCAACCAAAAAA
2. _GC-05-162-4-15
CCCCTTAATTAAGGAACCAACCAAAAAA
3. _5214_1_>_FP
___CC______TT___GGAA______CCAA______
4. _5415_3
___CCTT___TT___GGAA______CCAA______
5. _GC-05-063-2-14
CCCCTTAATTAAGGAACCAACCAAAAAA
6. _GC-05-162-4-15
CCCCTTAATTAAGGAACCAACCAAAAAA
7. _5214_4_>_FP
___CCTT___TT___GGAA______CCAA______
8. _5415_1_>_FP
___CCTT___TT___GGAA______CCAA______
9. _GC-05-063-2-14
CCCCTTAATTAAGGAACCAACCAAAAAA
10. _GC-05-162-4-15
CCCCTTAATTAAGGAACCAACCAAAAAA
11. _5214_2_>_FP
___CCTT___TT___GGAA______CCAA______
12. _5415_4
___CCTT___TT___GGAA______CCAA______
13. _GC-05-063-2-14
CCCCTTAATTAAGGAACCAACCAAAAAA
14. _GC-05-162-4-15
CCCCTTAATTAAGGAACCAACCAAAAAA
15. _5214_5
___CCTT___TT___GGAA______CCAA______
16. _5415_2
___CCTT___TT___GGAA______CCAA______
17. _GC-05-063-2-14
CCCC___AATTAAGGAACCAACCAAAAAA
18. _GC-05-162-4-15
CCCCTTAATTAAGGAACCAACCAAAAAA
19. _5214_3_>_FP
___CCTT___TT___GGAA______CCAA______
20. _5415_5
___CCTT___TT___GGAA______CCAA______
21. _RUQ_50
___CCTT___TT___GGAA______CCAA______
22. _RUQ_50
___CCTT___TT___GGAACC___CC_________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-063-2-14
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
2. _GC-05-162-4-15
TTCCGGGGTTTTTTAAGGGGCCCCCC___
3. _5214_1_>_FP
______GG__________________GG___CC______
4. _5415_3
______GG__________________GG___CC______
5. _GC-05-063-2-14
TTCCGGGGTTTTTTAAGGGGCCCCCC___
6. _GC-05-162-4-15
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
7. _5214_4_>_FP
______GG__________________GG___CC______
8. _5415_1_>_FP
______GG__________________GG___CC______
9. _GC-05-063-2-14
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
10. _GC-05-162-4-15
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
11. _5214_2_>_FP
______GG__________________GG___CC______
12. _5415_4
______GG__________________GG___CC______
13. _GC-05-063-2-14
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
14. _GC-05-162-4-15
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
15. _5214_5
______GG__________________GG___CC______
16. _5415_2
______GG__________________GG___CC______
17. _GC-05-063-2-14
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
18. _GC-05-162-4-15
TTCCGGGGTTTTTTAAGGGGCCCCCCGG
19. _5214_3_>_FP
______GG__________________GG___CC______
20. _5415_5
______GG__________________GG___CC______
21. _RUQ_50
______GG__________________GG___CC______
22. _RUQ_50
___TTGGGG______TTAA___GGCCCC___GG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-063-2-14
TTGGCCAACCAACCTTCCCCGGGGAACC
2. _GC-05-162-4-15
TTGGCCAACCAACCTTCCCCGGGGAACC
3. _5214_1_>_FP
TTGG___AACCAA_________CCGG___AA___
4. _5415_3
TTGG___AACCAA_________CCGG___AA___
5. _GC-05-063-2-14
TTGGCCAACCAACCTTCCCCGGGGAACC
6. _GC-05-162-4-15
TTGGCCAACCAACCTTCCCCGGGGAACC
7. _5214_4_>_FP
TTGG___AACCAA_________CCGG___AA___
8. _5415_1_>_FP
TTGG___AACCAA_________CCGG___AA___
9. _GC-05-063-2-14
TTGGCCAACCAACCTTCCCCGGGGAACC
10. _GC-05-162-4-15
TTGGCCAACCAACCTTCCCCGGGGAACC
11. _5214_2_>_FP
TTGG___AACCAA_________CCGG___AA___
12. _5415_4
TTGG___AACCAA_________CCGG___AA___
13. _GC-05-063-2-14
TTGGCCAACCAACCTTCCCCGGGGAACC
14. _GC-05-162-4-15
TTGGCCAACCAACCTTCCCCGGGGAACC
15. _5214_5
TTGG___AACCAA_________CCGG___AA___
16. _5415_2
TTGG___AACCAA_________CCGG___AA___
17. _GC-05-063-2-14
TTGGCCAACCAACCTTCCCCGGGGAACC
18. _GC-05-162-4-15
TTGGCCAACCAACCTTCCCCGGGGAACC
19. _5214_3_>_FP
TTGG___AACCAA_________CCGG___AA___
20. _5415_5
TTGG___AACCAA_________CCGG___AA___
21. _RUQ_50
TTGG___AACCAA_________CCGG___AA___
22. _RUQ_50
_______________AACC______CC___GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-063-2-14
AATTTTTTTTCCGGCCTTTTTT___GGTT
2. _GC-05-162-4-15
AATTTTTTTTCCGGCCTTTTTT___GGTT
3. _5214_1_>_FP
______TT______CC______TTTT_________TT
4. _5415_3
______TT______CC______TTTT_________TT
5. _GC-05-063-2-14
AATTTTTTTTCCGGCCTTTTTT___GGTT
6. _GC-05-162-4-15
AATTTTTTTTCCGGCCTTTTTT___GGTT
7. _5214_4_>_FP
______TT______CC______TTTT_________TT
8. _5415_1_>_FP
______TT______CC______TTTT_________TT
9. _GC-05-063-2-14
AATTTTTTTTCCGGCCTTTTTT___GGTT
10. _GC-05-162-4-15
AATTTTTTTTCCGGCCTTTTTTCCGGTT
11. _5214_2_>_FP
______TT______CC______TTTT_________TT
12. _5415_4
______TT______CC______TTTT_________TT
13. _GC-05-063-2-14
AATTTTTTTTCCGGCCTTTTTT___GGTT
14. _GC-05-162-4-15
AATTTTTTTTCCGGCCTTTTTT___GGTT
15. _5214_5
______TT______CC______TTTT_________TT
16. _5415_2
______TT______CC______TTTT_________TT
17. _GC-05-063-2-14
AA___TTTTTTCCGGCCTTTTTT___GGTT
18. _GC-05-162-4-15
AATTTTTTTTCCGGCCTTTTTT___GGTT
19. _5214_3_>_FP
______TT______CC______TTTT_________TT
20. _5415_5
______TT______CC______TTTT___CC___TT
21. _RUQ_50
______TT______CC______TTTT___CC___TT
22. _RUQ_50
AATT__________________TT___TT_________
 85 86 87 88 89 90 91 92 93 94     
1. _GC-05-063-2-14
TTCTCCAACCAAAA___AAAAX_XX_XX_XX_X
2. _GC-05-162-4-15
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
3. _5214_1_>_FP
___CTCCAACC_______________X_XX_XX_XX_X
4. _5415_3
___CTCCAACC_______________X_XX_XX_XX_X
5. _GC-05-063-2-14
TTCTCCAACCAAAA___AAAAX_XX_XX_XX_X
6. _GC-05-162-4-15
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
7. _5214_4_>_FP
___CTCCAACC_______________X_XX_XX_XX_X
8. _5415_1_>_FP
___CTCCAACC_______________X_XX_XX_XX_X
9. _GC-05-063-2-14
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
10. _GC-05-162-4-15
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
11. _5214_2_>_FP
___CTCCAACC_______________X_XX_XX_XX_X
12. _5415_4
___CTCCAACC_______________X_XX_XX_XX_X
13. _GC-05-063-2-14
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
14. _GC-05-162-4-15
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
15. _5214_5
___CTCCAACC_______________X_XX_XX_XX_X
16. _5415_2
___CTCCAACC_______________X_XX_XX_XX_X
17. _GC-05-063-2-14
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
18. _GC-05-162-4-15
TTCTCCAACCAAAAAAAAAAX_XX_XX_XX_X
19. _5214_3_>_FP
___CTCCAACC_______________X_XX_XX_XX_X
20. _5415_5
___CTCCAACC_______________X_XX_XX_XX_X
21. _RUQ_50
___CTCCAGCC_______________X_XX_XX_XX_X
22. _RUQ_50
TTCTCCAA__________________X_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018
2._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 4
Notes: 4
 Mars, 2018
3._SPEC_54_/1
Location: 5214 1 > FP
 Dapeng Zhang, 2016
4._SPEC_54_/1
Location: 5415 3
 Dapeng Zhang, 2016
5._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018
6._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 2
Notes: 2
 Mars, 2018
7._SPEC_54_/1
Location: 5214 4 > FP
 Dapeng Zhang, 2016
8._SPEC_54_/1
Location: 5415 1 > FP
 Dapeng Zhang, 2016
9._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 5
Notes: 5
 Mars, 2018
10._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 5
Notes: 5
 Mars, 2018
11._SPEC_54_/1
Location: 5214 2 > FP
 Dapeng Zhang, 2016
12._SPEC_54_/1
Location: 5415 4
 Dapeng Zhang, 2016
13._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018
14._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 3
Notes: 3
 Mars, 2018
15._SPEC_54_/1
Location: 5214 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
16._SPEC_54_/1
Location: 5415 2
 Dapeng Zhang, 2016
17._SPEC_54_/1 GC-05-063-2-14
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018
18._SPEC_54_/1 GC-05-162-4-15
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018
19._SPEC_54_/1
Location: 5214 3 > FP
 Dapeng Zhang, 2016
20._SPEC_54_/1
Location: 5415 5
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

21._SPEC_54_/1 RUQ 50
 Dapeng Zhang, 2016
22._SPEC_54_/1 RUQ 50
 Dapeng Zhang, 2014

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP872 53TcSNP878 54TcSNP891 55TcSNP894
56TcSNP899 57TcSNP917 58TcSNP929 59TcSNP944 60TcSNP953
61TcSNP994 62TcSNP998 63TcSNP999 64TcSNP1034 65TcSNP1041
66TcSNP1060 67TcSNP1062 68TcSNP1063 69TcSNP1075 70TcSNP1096
71TcSNP1111 72TcSNP1126 73TcSNP1144 74TcSNP1149 75TcSNP1156
76TcSNP1165 77TcSNP1175 78TcSNP1242 79TcSNP1253 80TcSNP1270
81TcSNP1309 82TcSNP1350 83TcSNP1383 84TcSNP1414 85TcSNP1439
86TcSNP1442 87TcSNP1458 88TcSNP1484 89TcSNP1520 90Tcm001s00947643
91Tcm002s20575712 92Tcm003s01336581 93Tcm003s07402719 94Tcm006s26664133