SNP Profiles of UF-613   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTACAGAGCTCTCTCTAGTTCTCC
1._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
2._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
3._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
4._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
5._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
6._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
7._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
8._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
9._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
10._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
11._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
12._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
13._UF_613
ATAACTAC____CTCTAG_CT_
14._UF_613
ATAACTAC____CTCTAG_CT_
15._UF_613
ATAACTAC____CTCTAG_CT_
16._UF_613
ATAACTAC____CTCTAG_CT_
17._UF_613
ATAACTAC____CTCTAG_CT_
18._UF_613
ATAACTAC____CTCTAG_CT_
19._UF_613
ATAACTAC____CTCTAG_CT_
20._UF_613
ATAACTAC____CTCTAG_CT_
21._UF_613
ATAACTAC____CTCTAG_CT_
22._UF_613
ATAACTAC____CTCTAG_CT_
23._UF_613
ATAACTAC____CTCTAG_CT_
24._UF_613
ATAACTAC____CTCTAG_CT_
25._UF_613
ATACCTAC____CTCTAG_CT_
26._RUQ_1573
ATACCTAC____CTCTAG_CT_
27._RUQ_1573
__CTAC__TT_CT__TTCT_
28._UF_613
ATACCTAC____CTCTAG_CT_
29._RUQ_1573
___AC__TT_______
30._RUQ_1573
___AC____CT___CT_
31._UF_613
AAACCTAC____TTTTGG_CT_
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGGGCTAATTAGATATCG
1._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
2._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
3._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
4._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
5._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
6._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
7._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
8._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
9._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
10._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
11._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
12._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
13._UF_613
___AG__GG____ATAT_
14._UF_613
___AG__GG____ATAT_
15._UF_613
___AG__GG____ATAT_
16._UF_613
___AG__GG____ATAT_
17._UF_613
___AG__GG____ATAT_
18._UF_613
___AG__GG____ATAT_
19._UF_613
___AG__GG____ATAT_
20._UF_613
___AG__GG____ATAT_
21._UF_613
___AG__GG____ATAT_
22._UF_613
___AG__GG____ATAT_
23._UF_613
___AG__GG____ATAT_
24._UF_613
___AG__GG____ATAT_
25._UF_613
___AG__GG____ATAT_
26._RUQ_1573
___AG__GG____ATAT_
27._RUQ_1573
_____CG____AG_ATCG
28._UF_613
___AG__GG____ATAT_
29._RUQ_1573
___AGCT_________
30._RUQ_1573
__AG__CG_CT__AG_ATCG
31._UF_613
___AG__CG____ATAA_
 2930313233343536373839404142
_Input profile
GGATCTGGAGCCCCAGTTGGTTAGCTAA
1._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
2._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
3._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
4._GC-05-057-2-08
GGATCTGGAGCCCCAGTTGGTTAGCTAA
5._GC-05-057-2-08
GGATCTGGAGCCCCAGTTGGTTAGCTAA
6._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
7._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
8._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
9._GC-05-057-2-08
GGATCTGGAGCCCCAGTTGGTTAGCTAA
10._GC-05-057-2-08
GGATCTGGAGCC_AGTTGGTTAGCTAA
11._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
12._GC-08-046-1-57
GGATCTGGAGCCCCAGTTGGTTAGCTAA
13._UF_613
GGAT___CC_AGTT__AG__
14._UF_613
GGAT___CC_AGTT__AG__
15._UF_613
GGAT___CC_AGTT__AG__
16._UF_613
GGAT___CC_AGTT__AG__
17._UF_613
GGAT___CC_AGTT__AG__
18._UF_613
GGAT___CC_AGTT__AG__
19._UF_613
GGAT___CC_AGTT__AG__
20._UF_613
GGAT___CC_AGTT__AG__
21._UF_613
GGAT___CC_AGTT__AG__
22._UF_613
GGAT___CC_AGTT__AG__
23._UF_613
GGAT___CC_AGTT__AG__
24._UF_613
GGAT___CC_AGTT__AG__
25._UF_613
GGAT___CC_AGTT__AG__
26._RUQ_1573
GGAT___CC_AGTT__AG__
27._RUQ_1573
GG___AGCCCCAGTT__AGCT_
28._UF_613
GGAT___CC_AGTT__AG__
29._RUQ_1573
GG____CC_AG____CT_
30._RUQ_1573
CC___AGCC____TT_CT_
31._UF_613
CGAT___CG_AGGT__AG__
 4344454647484950515253545556
_Input profile
CGGGTTCCAAGGAACCCCGGAGGTTTCT
1._GC-08-046-1-57
CGGGTTCCAAGGAACCCCGGAGGTTTCT
2._GC-08-046-1-57
CGGGTTCCAAGGAACCCCGGAGGTTTCT
3._GC-08-046-1-57
CGGGTTCCAAGGAACCCCGGAGGTTTCT
4._GC-05-057-2-08
CGGGTTCCAAGGAACCCCGGAGGTTTCT
5._GC-05-057-2-08
CGGGTTCCAAGGAACCCCGGAGGTTTCT
6._GC-08-046-1-57
CGGGTTCCAAGGAACCCCGGAGGTTTCT
7._GC-08-046-1-57
CGGGTTCCAAGGAACCCCGGAGGTTTCT
8._GC-08-046-1-57
CGGGTTCCAAGGAACCCCGGAGGTTTCT
9._GC-05-057-2-08
CGGGTTCCAAGGAACCCCGGAGGTTTCT
10._GC-05-057-2-08
CGGGTTCCAAGGAACCCCGGAGGTTTCT
11._GC-08-046-1-57
CGGGTTCCAAGGAACCCCGGAGGTTTCT
12._GC-08-046-1-57
_GGTTCCAAGGAACCCCGGAGGTTTCT
13._UF_613
___CC_________CT
14._UF_613
___CC_________CT
15._UF_613
___CC_________CT
16._UF_613
___CC_________CT
17._UF_613
___CC_________CT
18._UF_613
___CC_________CT
19._UF_613
___CC_________CT
20._UF_613
___CC_________CT
21._UF_613
___CC_________CT
22._UF_613
___CC_________CT
23._UF_613
___CC_________CT
24._UF_613
___CC_________CT
25._UF_613
___CC_________CT
26._RUQ_1573
___CC_________CT
27._RUQ_1573
_GGTT__GG______CTCT
28._UF_613
___CC_________CT
29._RUQ_1573
_____GG________
30._RUQ_1573
__TT_AA________CT
31._UF_613
___CC_________TT
 5758596061626364656667686970
_Input profile
CTTTAGCCCTCTACCGGGCCAGGTTTAG
1._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
2._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
3._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
4._GC-05-057-2-08
CTTTAGCCCTCTACCGGGCCAGGTTTAG
5._GC-05-057-2-08
CTTTAGCCCTCTACCGGGCCAGGTTTAG
6._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
7._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
8._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
9._GC-05-057-2-08
CTTTAGCCCTCTACCGGGCCAGGTTTAG
10._GC-05-057-2-08
CTTTAGCCCTCTACCGGGCCAGGTTTAG
11._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
12._GC-08-046-1-57
CTTTAGCCCTCTACCGGGCCAGGTTTAG
13._UF_613
CT__CC_CTACCG_CCAGGTTT_
14._UF_613
CT__CC_CTACCG_CCAGGTTT_
15._UF_613
CT__CC_CTACCG_CCAGGTTT_
16._UF_613
CT__CC_CTACCG_CCAGGTTT_
17._UF_613
CT__CC_CTACCG_CCAGGTTT_
18._UF_613
CT__CC_CTACCG_CCAGGTTT_
19._UF_613
CT__CC_CTACCG_CCAGGTTT_
20._UF_613
CT__CC_CTACCG_CCAGGTTT_
21._UF_613
CT__CC_CTACCG_CCAGGTTT_
22._UF_613
CT__CC_CTACCG_CCAGGTTT_
23._UF_613
CT__CC_CTACCG_CCAGGTTT_
24._UF_613
CT__CC_CTACCG_CCAGGTTT_
25._UF_613
CT__CC_CTACCG_CCAGGTTT_
26._RUQ_1573
CT__CC_CTACCG_CCAGGTTT_
27._RUQ_1573
_TT-CCCTCTAC_GGCCAGGTTTAG
28._UF_613
TT____CTACCG_CCAGGTTT_
29._RUQ_1573
__AG______CCAG_TTAG
30._RUQ_1573
___GGCT_AC_GGCCAG___
31._UF_613
CT__CC_CCCCCG_AAAGGTGG_
 7172737475767778798081828384
_Input profile
TTCCTTACAGACAAAAACGGCCATACCT
1._GC-08-046-1-57
TTCCTTACAGACAAAAACGGCCATACCT
2._GC-08-046-1-57
TTCCTTACAGACAAAAACGGCCATACCT
3._GC-08-046-1-57
TTCCTTACAGACAAAAACGGCCATACCT
4._GC-05-057-2-08
TTCCTTACAGACAAAAACGGCCATACCT
5._GC-05-057-2-08
TTCCTTACAGACAAAAACGGCCATACCT
6._GC-08-046-1-57
TTCCTTACAGACAAAAACGGCCATACCT
7._GC-08-046-1-57
TTCCTTACAGACAAAAACGGCCATACCT
8._GC-08-046-1-57
TTCCTTACAGAC_AAACGGCCATACCT
9._GC-05-057-2-08
TTCCTTACAGACAAAAACGGCCATACCT
10._GC-05-057-2-08
TTCCTTACAGACAAAAACGGCCATACCT
11._GC-08-046-1-57
TTCCTTACAGACAAAAACGGCCATACCT
12._GC-08-046-1-57
TTCCTTACAGACAAAAACGGCCATACCT
13._UF_613
__TT_____ACGG___CT
14._UF_613
__TT_____ACGG___CT
15._UF_613
__TT_____ACGG___CT
16._UF_613
__TT_____ACGG___CT
17._UF_613
__TT_____ACGG___CT
18._UF_613
__TT_____ACGG___CT
19._UF_613
__TT_____ACGG___CT
20._UF_613
__TT_____ACGG___CT
21._UF_613
__TT_____ACGG___CT
22._UF_613
__TT_____ACGG___CT
23._UF_613
__TT_____ACGG___CT
24._UF_613
__TT_____ACGG___CT
25._UF_613
__TT_____ACGG___CT
26._RUQ_1573
__TT_____ACGG___CT
27._RUQ_1573
________ACGG__ACCT
28._UF_613
__TT_____ACGG___CT
29._RUQ_1573
________ACGG__AC_
30._RUQ_1573
_CC_______CC____
31._UF_613
__CT_____ACCG___TT
 85868788899091929394    
_Input profile
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
1._GC-08-046-1-57
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
2._GC-08-046-1-57
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
3._GC-08-046-1-57
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
4._GC-05-057-2-08
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
5._GC-05-057-2-08
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
6._GC-08-046-1-57
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
7._GC-08-046-1-57
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
8._GC-08-046-1-57
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
9._GC-05-057-2-08
TTCTTTAA_CCGTCTAAGGX_XX_XX_XX_X
10._GC-05-057-2-08
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
11._GC-08-046-1-57
TTCTTTAACCCCGT_AAGGX_XX_XX_XX_X
12._GC-08-046-1-57
TTCTTTAACCCCGTCTAAGGX_XX_XX_XX_X
13._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
14._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
15._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
16._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
17._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
18._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
19._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
20._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
21._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
22._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
23._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
24._UF_613
TTCT_AA_CCGT___X_XX_XX_XX_X
25._UF_613
TTCT_AA_CCGTCT__X_XX_XX_XX_X
26._RUQ_1573
TTCT_AA_CCGTCT__X_XX_XX_XX_X
27._RUQ_1573
___AACCCCGT___X_XX_XX_XX_X
28._UF_613
TT__AA_CCGTCT__X_XX_XX_XX_X
29._RUQ_1573
_CT__CC_GT___X_XX_XX_XX_X
30._RUQ_1573
TT_________X_XX_XX_XX_X
31._UF_613
CTCT_AG__GTCT__X_XX_XX_XX_X

Input profile: UF_613 GC-05-057-2-08

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._UF_613 GC-08-046-1-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._UF_613 GC-08-046-1-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._UF_613 GC-08-046-1-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._UF_613 GC-05-057-2-08

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

5._UF_613 GC-05-057-2-08

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._UF_613 GC-08-046-1-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._UF_613 GC-08-046-1-57

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._UF_613 GC-05-057-2-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

10._UF_613 GC-05-057-2-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

14._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

15._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

16._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

17._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

18._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

19._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

20._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

21._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

22._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

23._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

24._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

25._UF_613

98.7 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

26._UF_613 RUQ_1573

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._UF_613 RUQ_1573

97.6 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._UF_613

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

29._UF_613 RUQ_1573

92.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

30._UF_613 RUQ_1573

86.5 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240