SNP Profiles of UF-613   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTACAGAGCTCTCTCTAGTTCTCC
1._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
2._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
3._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
4._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
5._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
6._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
7._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
8._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
9._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
10._GC-05-057-2-08
ATAACTACAGAGCTCTCTCTAGTTCTCC
11._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
12._GC-08-046-1-57
ATAACTACAGAGCTCTCTCTAGTTCTCC
13._UF_613
ATAACTAC____CTCTAG_CT_
14._UF_613
ATAACTAC____CTCTAG_CT_
15._UF_613
ATAACTAC____CTCTAG_CT_
16._UF_613
ATAACTAC____CTCTAG_CT_
17._UF_613
ATAACTAC____CTCTAG_CT_
18._UF_613
ATAACTAC____CTCTAG_CT_
19._UF_613
ATAACTAC____CTCTAG_CT_
20._UF_613
ATAACTAC____CTCTAG_CT_
21._UF_613
ATAACTAC____CTCTAG_CT_
22._UF_613
ATAACTAC____CTCTAG_CT_
23._UF_613
ATAACTAC____CTCTAG_CT_
24._UF_613
ATAACTAC____CTCTAG_CT_
25._UF_613
ATACCTAC____CTCTAG_CT_
26._RUQ_1573
ATACCTAC____CTCTAG_CT_
27._RUQ_1573
__CTAC__TT_CT__TTCT_
28._UF_613
ATACCTAC____CTCTAG_CT_
29._RUQ_1573
___AC__TT_______
30._RUQ_1573
___AC____CT___CT_
31._UF_613
AAACCTAC____TTTTGG_CT_
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGGGCTAATTAGATATCG
1._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
2._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
3._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
4._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
5._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
6._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
7._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
8._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
9._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
10._GC-05-057-2-08
ATACAAAGCGCGGGCTAATTAGATATCG
11._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
12._GC-08-046-1-57
ATACAAAGCGCGGGCTAATTAGATATCG
13._UF_613
___AG__GG____ATAT_
14._UF_613
___AG__GG____ATAT_
15._UF_613
___AG__GG____ATAT_
16._UF_613
___AG__GG____ATAT_
17._UF_613
___AG__GG____ATAT_
18._UF_613
___AG__GG____ATAT_
19._UF_613
___AG__GG____ATAT_
20._UF_613
___AG__GG____ATAT_
21._UF_613
___AG__GG____ATAT_
22._UF_613
___AG__GG____ATAT_
23._UF_613
___AG__GG____ATAT_
24._UF_613
___AG__GG____ATAT_
25._UF_613
___AG__GG____ATAT_
26._RUQ_1573
___AG__GG____ATAT_
27._RUQ_1573
_____CG____AG_ATCG
28._UF_613
___AG__GG____ATAT_
29._RUQ_1573
___AGCT_________
30._RUQ_1573
__AG__CG_CT__AG_ATCG
31._UF_613
___AG__CG____ATAA_
 2930313233343536373839404142
_Input profile
GGATCTGGAGCCAGTTGGTTAGCTAACG
1._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAACG
2._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAACG
3._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAACG
4._GC-05-057-2-08
GGATCTGGAGCCAGTTGGTTAGCTAACG
5._GC-05-057-2-08
GGATCTGGAGCCAGTTGGTTAGCTAACG
6._GC-05-057-2-08
GGATCTGGAGCCAGTTGGTTAGCTAACG
7._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAACG
8._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAACG
9._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAACG
10._GC-05-057-2-08
GGATCTGGAGCCAGTTGGTTAGCTAACG
11._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAACG
12._GC-08-046-1-57
GGATCTGGAGCCAGTTGGTTAGCTAA_
13._UF_613
GGAT___CCAGTT__AG___
14._UF_613
GGAT___CCAGTT__AG___
15._UF_613
GGAT___CCAGTT__AG___
16._UF_613
GGAT___CCAGTT__AG___
17._UF_613
GGAT___CCAGTT__AG___
18._UF_613
GGAT___CCAGTT__AG___
19._UF_613
GGAT___CCAGTT__AG___
20._UF_613
GGAT___CCAGTT__AG___
21._UF_613
GGAT___CCAGTT__AG___
22._UF_613
GGAT___CCAGTT__AG___
23._UF_613
GGAT___CCAGTT__AG___
24._UF_613
GGAT___CCAGTT__AG___
25._UF_613
GGAT___CCAGTT__AG___
26._RUQ_1573
GGAT___CCAGTT__AG___
27._RUQ_1573
GG___AGCCAGTT__AGCT__
28._UF_613
GGAT___CCAGTT__AG___
29._RUQ_1573
GG____CCAG____CT__
30._RUQ_1573
CC___AGCC___TT_CT__
31._UF_613
CGAT___CGAGGT__AG___
 4344454647484950515253545556
_Input profile
GGTTCCAAGGAACCCCGGAGGTTTCTCT
1._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
2._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
3._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
4._GC-05-057-2-08
GGTTCCAAGGAACCCCGGAGGTTTCTCT
5._GC-05-057-2-08
GGTTCCAAGGAACCCCGGAGGTTTCTCT
6._GC-05-057-2-08
GGTTCCAAGGAACCCCGGAGGTTTCTCT
7._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
8._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
9._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
10._GC-05-057-2-08
GGTTCCAAGGAACCCCGGAGGTTTCTCT
11._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
12._GC-08-046-1-57
GGTTCCAAGGAACCCCGGAGGTTTCTCT
13._UF_613
__CC_________CTCT
14._UF_613
__CC_________CTCT
15._UF_613
__CC_________CTCT
16._UF_613
__CC_________CTCT
17._UF_613
__CC_________CTCT
18._UF_613
__CC_________CTCT
19._UF_613
__CC_________CTCT
20._UF_613
__CC_________CTCT
21._UF_613
__CC_________CTCT
22._UF_613
__CC_________CTCT
23._UF_613
__CC_________CTCT
24._UF_613
__CC_________CTCT
25._UF_613
__CC_________CTCT
26._RUQ_1573
__CC_________CTCT
27._RUQ_1573
GGTT__GG______CTCT_
28._UF_613
__CC_________CTTT
29._RUQ_1573
____GG_________
30._RUQ_1573
_TT_AA________CT_
31._UF_613
__CC_________TTCT
 5758596061626364656667686970
_Input profile
TTAGCCCTCTACCGGGCCAGGTTTAGTT
1._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
2._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
3._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
4._GC-05-057-2-08
TTAGCCCTCTACCGGGCCAGGTTTAGTT
5._GC-05-057-2-08
TTAGCCCTCTACCGGGCCAGGTTTAGTT
6._GC-05-057-2-08
TTAGCCCTCTACCGGGCCAGGTTTAGTT
7._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
8._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
9._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
10._GC-05-057-2-08
TTAGCCCTCTACCGGGCCAGGTTTAGTT
11._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
12._GC-08-046-1-57
TTAGCCCTCTACCGGGCCAGGTTTAGTT
13._UF_613
__CC_CTACCG_CCAGGTTT__
14._UF_613
__CC_CTACCG_CCAGGTTT__
15._UF_613
__CC_CTACCG_CCAGGTTT__
16._UF_613
__CC_CTACCG_CCAGGTTT__
17._UF_613
__CC_CTACCG_CCAGGTTT__
18._UF_613
__CC_CTACCG_CCAGGTTT__
19._UF_613
__CC_CTACCG_CCAGGTTT__
20._UF_613
__CC_CTACCG_CCAGGTTT__
21._UF_613
__CC_CTACCG_CCAGGTTT__
22._UF_613
__CC_CTACCG_CCAGGTTT__
23._UF_613
__CC_CTACCG_CCAGGTTT__
24._UF_613
__CC_CTACCG_CCAGGTTT__
25._UF_613
__CC_CTACCG_CCAGGTTT__
26._RUQ_1573
__CC_CTACCG_CCAGGTTT__
27._RUQ_1573
TT-CCCTCTAC_GGCCAGGTTTAG_
28._UF_613
____CTACCG_CCAGGTTT__
29._RUQ_1573
_AG______CCAG_TTAG_
30._RUQ_1573
__GGCT_AC_GGCCAG____
31._UF_613
__CC_CCCCCG_AAAGGTGG__
 7172737475767778798081828384
_Input profile
CCTTACAGACAAAAACGGCCATACCTTT
1._GC-08-046-1-57
CCTTACAGACAAAAACGGCCATACCTTT
2._GC-08-046-1-57
CCTTACAGACAAAAACGGCCATACCTTT
3._GC-08-046-1-57
CCTTACAGACAAAAACGGCCATACCTTT
4._GC-05-057-2-08
CCTTACAGACAAAAACGGCCATACCTTT
5._GC-05-057-2-08
CCTTACAGACAAAAACGGCCATACCTTT
6._GC-05-057-2-08
CCTTACAGACAAAAACGGCCATACCTTT
7._GC-08-046-1-57
CCTTACAGACAAAAACGGCCATACCTTT
8._GC-08-046-1-57
CCTTACAGACAAAAACGGCCATACCTTT
9._GC-08-046-1-57
CCTTACAGAC_AAACGGCCATACCTTT
10._GC-05-057-2-08
CCTTACAGACAAAAACGGCCATACCTTT
11._GC-08-046-1-57
CCTTACAGACAAAAACGGCCATACCTTT
12._GC-08-046-1-57
CCTTACAGACAAAAACGGCCATACCTTT
13._UF_613
_TT_____ACGG___CTTT
14._UF_613
_TT_____ACGG___CTTT
15._UF_613
_TT_____ACGG___CTTT
16._UF_613
_TT_____ACGG___CTTT
17._UF_613
_TT_____ACGG___CTTT
18._UF_613
_TT_____ACGG___CTTT
19._UF_613
_TT_____ACGG___CTTT
20._UF_613
_TT_____ACGG___CTTT
21._UF_613
_TT_____ACGG___CTTT
22._UF_613
_TT_____ACGG___CTTT
23._UF_613
_TT_____ACGG___CTTT
24._UF_613
_TT_____ACGG___CTTT
25._UF_613
_TT_____ACGG___CTTT
26._RUQ_1573
_TT_____ACGG___CTTT
27._RUQ_1573
_______ACGG__ACCT_
28._UF_613
_TT_____ACGG___CTTT
29._RUQ_1573
_______ACGG__AC__
30._RUQ_1573
CC_______CC____TT
31._UF_613
_CT_____ACCG___TTCT
 858687888990919293     
_Input profile
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
1._GC-08-046-1-57
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
2._GC-08-046-1-57
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
3._GC-08-046-1-57
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
4._GC-05-057-2-08
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
5._GC-05-057-2-08
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
6._GC-05-057-2-08
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
7._GC-08-046-1-57
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
8._GC-08-046-1-57
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
9._GC-08-046-1-57
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
10._GC-05-057-2-08
CTTTAA_CCGTCTAAGGX_XX_XX_XX_XX_X
11._GC-08-046-1-57
CTTTAACCCCGT_AAGGX_XX_XX_XX_XX_X
12._GC-08-046-1-57
CTTTAACCCCGTCTAAGGX_XX_XX_XX_XX_X
13._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
14._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
15._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
16._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
17._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
18._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
19._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
20._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
21._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
22._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
23._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
24._UF_613
CT_AA_CCGT___X_XX_XX_XX_XX_X
25._UF_613
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
26._RUQ_1573
CT_AA_CCGTCT__X_XX_XX_XX_XX_X
27._RUQ_1573
__AACCCCGT___X_XX_XX_XX_XX_X
28._UF_613
__AA_CCGTCT__X_XX_XX_XX_XX_X
29._RUQ_1573
CT__CC_GT___X_XX_XX_XX_XX_X
30._RUQ_1573
_________X_XX_XX_XX_XX_X
31._UF_613
CT_AG__GTCT__X_XX_XX_XX_XX_X

Input profile: UF_613 GC-05-057-2-08

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

1._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._UF_613 GC-05-057-2-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

5._UF_613 GC-05-057-2-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._UF_613 GC-05-057-2-08

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

8._UF_613 GC-08-046-1-57

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._UF_613 GC-08-046-1-57

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._UF_613 GC-05-057-2-08

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

11._UF_613 GC-08-046-1-57

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._UF_613 GC-08-046-1-57

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

14._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

15._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

16._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

17._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

18._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

19._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

20._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

21._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

22._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

23._UF_613

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

24._UF_613

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

25._UF_613

98.7 %
39 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

26._UF_613 RUQ_1573

98.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

27._UF_613 RUQ_1573

97.6 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

28._UF_613

97.3 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

29._UF_613 RUQ_1573

92.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

30._UF_613 RUQ_1573

86.5 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

31._UF_613

71.1 %
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240