SNP Profiles of PA-121 View Data

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_Input profile	AT	AA	TT	CC	AG	GG	CC	CC	CC	CC	AG	TT	CC	CC
1._PA_121_[PER]	AT	AA	TT	CC	_	_	_	_	CC	CC	AG	_	CC	_
2._RUQ_1059	_	_	CT	CC	_	_	CC	_	CC	_	_	TT	CC	_
3._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
4._GC-05-011-1-11	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
5._GC-05-011-1-11	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
6._GC-05-011-1-11	AA	AC	CT	CC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
7._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
8._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
9._RUQ_1059	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
10._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
11._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
12._PA_121_[PER]	AA	AC	CT	CC	_	_	_	_	CC	CC	GG	_	CC	_
13._RUQ_1059	_	_	_	CC	_	_	_	_	CC	_	_	_	CC	_
14._RUQ_1059	_	_	_	CC	_	_	CC	_	_	_	_	_	_	_
15._PA_121_[PER]	TT	_	CT	CC	_	_	_	_	CC	TT	AG	_	TT	_
16._GC-05-011-1-11	TT	_	CT	CC	AA	AA	TT	TT	CC	TT	AG	TT	TT	TT
17._RUQ_1059	AA	AC	_	CC	GG	AG	_	GG	GG	_	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AA	AG	CG	CG	GG	CT	AA	CC	GG	TT	AA	CC
1._PA_121_[PER]	_	_	_	AG	_	_	GG	_	_	_	_	TT	AA	_
2._RUQ_1059	_	_	_	_	_	CC	_	_	_	_	GG	_	AA	CC
3._PA_121_[PER]	_	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_
4._GC-05-011-1-11	AA	CC	_	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC
5._GC-05-011-1-11	AA	CC	_	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC
6._GC-05-011-1-11	AA	CC	_	GG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC
7._PA_121_[PER]	_	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_
8._PA_121_[PER]	_	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_
9._RUQ_1059	_	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_
10._PA_121_[PER]	_	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_
11._PA_121_[PER]	_	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_
12._PA_121_[PER]	_	_	_	GG	_	_	CG	_	_	_	_	AT	AA	_
13._RUQ_1059	_	_	GG	_	_	GG	_	CT	_	_	GG	_	AA	CC
14._RUQ_1059	_	_	_	GG	TT	_	_	_	_	_	_	_	_	_
15._PA_121_[PER]	_	_	_	AG	_	_	GG	_	_	_	_	AA	TT	_
16._GC-05-011-1-11	TT	AA	AA	AG	CG	GG	GG	CC	AA	CC	GG	AA	TT	CC
17._RUQ_1059	TT	CC	GG	GG	CG	_	CG	AG	AA	AA	GG	AT	AA	GG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	TT	GG	AA	CC	CC	AG	TT	GG	TT	AG	TT	AA
1._PA_121_[PER]	GG	AA	_	_	_	CC	_	AG	TT	_	_	AG	_	_
2._RUQ_1059	GG	_	_	_	GG	CG	CC	AG	GT	_	_	GG	TT	_
3._PA_121_[PER]	GG	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_
4._GC-05-011-1-11	GG	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG
5._GC-05-011-1-11	GG	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG
6._GC-05-011-1-11	GG	AA	TT	GT	GG	CG	CC	AG	GT	GG	TT	GG	TT	AG
7._PA_121_[PER]	GG	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_
8._PA_121_[PER]	GG	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_
9._RUQ_1059	GG	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_
10._PA_121_[PER]	GG	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_
11._PA_121_[PER]	GG	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_
12._PA_121_[PER]	GG	AA	_	_	_	CG	_	AG	GT	_	_	GG	_	_
13._RUQ_1059	CC	_	_	_	GG	CG	_	_	_	_	TT	_	TT	_
14._RUQ_1059	GG	_	_	_	_	CG	_	AG	_	_	_	_	TT	_
15._PA_121_[PER]	GG	AA	_	_	_	GG	_	AG	GT	_	_	GG	_	_
16._GC-05-011-1-11	GG	AA	TT	TT	AG	GG	CC	AG	GT	GG	TT	GG	CT	GG
17._RUQ_1059	CC	AA	AA	AC	GG	CG	CC	AG	AC	CC	AA	GG	AA	AG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CG	GG	TT	CT	AA	GG	AA	CC	AC	GG	GG	TT	TT	CT
1._PA_121_[PER]	_	_	_	CT	_	_	_	_	_	_	_	_	TT	CT
2._RUQ_1059	_	GG	TT	_	_	GG	_	_	_	_	_	CC	CC	_
3._PA_121_[PER]	_	_	_	TT	_	_	_	_	_	_	_	_	_	CT
4._GC-05-011-1-11	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	_	_	CT
5._GC-05-011-1-11	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	_	CC	CT
6._GC-05-011-1-11	CC	GG	TT	TT	AA	GG	AA	CC	CC	GG	AA	_	CC	CT
7._PA_121_[PER]	_	_	_	TT	_	_	_	_	_	_	_	_	CC	CT
8._PA_121_[PER]	_	_	_	TT	_	_	_	_	_	_	_	_	CC	CT
9._RUQ_1059	_	_	_	TT	_	_	_	_	_	_	_	_	CC	CT
10._PA_121_[PER]	_	_	_	TT	_	_	_	_	_	_	_	_	CC	CT
11._PA_121_[PER]	_	_	_	TT	_	_	_	_	_	_	_	_	CC	CT
12._PA_121_[PER]	_	_	_	TT	_	_	_	_	_	_	_	_	CC	CT
13._RUQ_1059	_	_	TT	_	AA	_	_	_	_	_	_	_	CC	_
14._RUQ_1059	_	_	_	_	_	GG	_	_	_	_	_	_	_	_
15._PA_121_[PER]	_	_	_	CC	_	_	_	_	_	_	_	_	CT	CC
16._GC-05-011-1-11	GG	TT	AT	CC	AA	GG	GG	CT	AC	GG	AG	TT	CT	CC
17._RUQ_1059	GG	CC	_	AA	_	GG	AA	GG	_	GG	AA	GG	GG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	AA	CC	TT	CT	AA	CG	GG	CC	AA	GT	GG	AG	CT
1._PA_121_[PER]	_	_	CC	_	CT	AA	CG	_	CC	AA	GT	GG	_	_
2._RUQ_1059	TT	-	CC	CT	CT	AA	_	GG	AC	AA	GG	GG	AG	_
3._PA_121_[PER]	_	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_
4._GC-05-011-1-11	TT	GG	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC
5._GC-05-011-1-11	TT	GG	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC
6._GC-05-011-1-11	TT	GG	CC	CT	CT	AA	GG	GG	AC	AA	GG	GG	AG	CC
7._PA_121_[PER]	_	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_
8._PA_121_[PER]	_	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_
9._RUQ_1059	_	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_
10._PA_121_[PER]	_	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_
11._PA_121_[PER]	_	_	CC	_	CT	AA	GG	_	AC	AA	GG	GG	_	_
12._PA_121_[PER]	_	_	_	_	CT	AA	GG	_	AC	AA	GG	GG	_	_
13._RUQ_1059	_	_	GG	CT	_	AA	_	GG	AC	AA	_	_	_	_
14._RUQ_1059	_	GG	_	_	_	_	_	_	AC	AA	_	GG	AG	_
15._PA_121_[PER]	_	_	CC	_	CT	AA	GG	_	CC	AA	GT	GT	_	_
16._GC-05-011-1-11	TT	AG	CC	TT	CT	AA	GG	GG	CC	AA	GT	GT	AG	TT
17._RUQ_1059	AA	GG	GG	AG	AG	AA	GG	GG	AC	AA	CC	CC	AG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AA	CT	AC	AG	AC	AA	AA	CC	CG	CC	AA	AA	TT
1._PA_121_[PER]	_	AA	CT	_	_	_	_	_	CC	CG	_	_	_	TT
2._RUQ_1059	_	_	_	_	_	_	_	_	AA	GG	_	_	AA	TT
3._PA_121_[PER]	_	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT
4._GC-05-011-1-11	CC	AA	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT
5._GC-05-011-1-11	CC	AA	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT
6._GC-05-011-1-11	CC	AA	TT	CC	AA	CC	AC	AG	AA	GG	CC	AT	AA	TT
7._PA_121_[PER]	_	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT
8._PA_121_[PER]	_	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT
9._RUQ_1059	_	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT
10._PA_121_[PER]	_	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT
11._PA_121_[PER]	_	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT
12._PA_121_[PER]	_	AA	TT	_	_	_	_	_	AA	GG	_	_	_	TT
13._RUQ_1059	CC	_	_	_	_	_	_	_	_	CC	_	_	_	_
14._RUQ_1059	_	AA	_	_	_	_	_	_	AA	GG	_	_	AA	_
15._PA_121_[PER]	_	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC
16._GC-05-011-1-11	CC	AA	CT	CC	AG	CC	CC	AA	CC	CG	CC	AA	CC	CC
17._RUQ_1059	_	_	AA	CC	AA	CC	AC	_	AA	CC	GG	AT	AA	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	TT	CT	TT	AG	TT	CC	TT	CT	AA	GG	X_X	X_X	X_X	X_X
1._PA_121_[PER]	TT	CT	_	AG	_	CC	TT	CT	_	_	X_X	X_X	X_X	X_X
2._RUQ_1059	_	_	_	AG	CC	CC	TT	_	_	_	X_X	X_X	X_X	X_X
3._PA_121_[PER]	TT	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
4._GC-05-011-1-11	TT	CC	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
5._GC-05-011-1-11	TT	CC	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
6._GC-05-011-1-11	TT	CC	CT	AG	CC	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X
7._PA_121_[PER]	TT	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
8._PA_121_[PER]	TT	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
9._RUQ_1059	TT	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
10._PA_121_[PER]	TT	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
11._PA_121_[PER]	TT	CC	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
12._PA_121_[PER]	TT	_	_	AG	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
13._RUQ_1059	TT	_	_	_	_	_	_	_	_	_	X_X	X_X	X_X	X_X
14._RUQ_1059	_	CC	_	_	CC	_	TT	_	_	_	X_X	X_X	X_X	X_X
15._PA_121_[PER]	CT	CC	_	AA	_	CC	GT	TT	_	_	X_X	X_X	X_X	X_X
16._GC-05-011-1-11	CT	CC	TT	AA	CT	CC	GT	TT	AT	GG	X_X	X_X	X_X	X_X
17._RUQ_1059	AA	_	AG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: PA_121_[PER] GC-05-011-1-11

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

1._PA_121_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5111 4

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_121_[PER] RUQ_1059

77.4 %
42 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._PA_121_[PER]

74.4 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 5 > FP

Dapeng Zhang, 2016

4._PA_121_[PER] GC-05-011-1-11

73.6 %
91 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

5._PA_121_[PER] GC-05-011-1-11

72.8 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

6._PA_121_[PER] GC-05-011-1-11

72.8 %
92 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._PA_121_[PER]

72.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 3

Dapeng Zhang, 2016

8._PA_121_[PER]

72.5 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 1 > FP

Dapeng Zhang, 2016

9._PA_121_[PER] RUQ_1059

72.5 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

10._PA_121_[PER]

72.5 %
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana

Location: P60 102

Dapeng Zhang, 2016

11._PA_121_[PER]

72.5 %
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0233

Dapeng Zhang, 2016

12._PA_121_[PER]

72.4 %
38 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D393

Dapeng Zhang, 2016

13._PA_121_[PER] RUQ_1059

71.2 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

14._PA_121_[PER] RUQ_1059

69 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

15._PA_121_[PER]

66.7 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 5111 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

16._PA_121_[PER] GC-05-011-1-11

65.1 %
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP4

17._PA_121_[PER] RUQ_1059

35 %
80 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP860	18	TcSNP1062	19	TcSNP836	20	TcSNP878
21	TcSNP929	22	TcSNP413	23	TcSNP653	24	TcSNP1149	25	TcSNP174
26	TcSNP32	27	TcSNP372	28	TcSNP448	29	TcSNP872	30	TcSNP953
31	TcSNP1034	32	TcSNP1175	33	TcSNP1111	34	TcSNP577	35	TcSNP90
36	TcSNP998	37	TcSNP150	38	TcSNP28	39	TcSNP751	40	TcSNP1484
41	TcSNP602	42	TcSNP561	43	TcSNP894	44	TcSNP1063	45	TcSNP1126
46	TcSNP1270	47	TcSNP606	48	TcSNP329	49	TcSNP689	50	TcSNP944
51	TcSNP1242	52	TcSNP1383	53	TcSNP547	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240