SNP Profiles of "PA 121 [PER]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-011-1-11
______GGGGAT___GG______CCTTCCTT___
2. _GC-05-011-1-11
______GGGGAA___AA______CCTTCCTT___
3. _GC-05-011-1-11
______GGGGAT___GG______CCTTCCTT___
4. _GC-05-011-1-11
______CGGGTT___AG______CCTTCCCC___
5. _GC-05-011-1-11
______GGGGAT___GG______CCTTCCTT___
6. _5111_3
______GG___AT___________________________
7. _5111_1_>_FP
______GG___AT___________________________
8. _5111_5_>_FP
______GG___AT___________________________
9. _5111_4
______CG___TT___________________________
10. _5111_2_>_FP
______GG___AA___________________________
11. _RUQ_1059
__________________________________________
12. _RUQ_1059
TTCC_________CT___CCGG____________TT
13. _RUQ_1059
______GGCCAT___GG______GGAACCAA___
14. _RUQ_1059
______________________________TTCC______
15. _RUQ_1059
______GG___AT___________________________
16. _P60_102
______GG___AT___________________________
17. _C0233
______GG___AT___________________________
18. _Marper_D393
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-011-1-11
___ACGTCCAAGG______AA___CCAAGGCC
2. _GC-05-011-1-11
___CCGTCTATGG______AA___CCAAGGCC
3. _GC-05-011-1-11
___ACGTCCAAGG______AA___CCAAGGCC
4. _GC-05-011-1-11
___CCTTTTAAGG______AA___CCAAGGCC
5. _GC-05-011-1-11
___ACGT___AAGG______AA___CCAAGGCC
6. _5111_3
___ACGTCC____________AA___CCAA___CC
7. _5111_1_>_FP
___ACGTCC____________AA___CCAA___CC
8. _5111_5_>_FP
___ACGT_______________AA___CCAA___CC
9. _5111_4
___CCTTTT____________AA___CCAA___CC
10. _5111_2_>_FP
___CCGTCT____________AA___CCAA___CC
11. _RUQ_1059
___AC___CC___GG______AA___GGAA______
12. _RUQ_1059
AAAC____________CCGG___GG___AA______
13. _RUQ_1059
___ACACGGTTGG______AA___GGAAGGGG
14. _RUQ_1059
___ACGTCC___GG______AA___CCAA___CC
15. _RUQ_1059
___ACGTCC____________AA___CCAA___CC
16. _P60_102
___ACGTCC____________AA___CCAA___CC
17. _C0233
___ACGTCC____________AA___CCAA___CC
18. _Marper_D393
___ACGTCC____________AA______AA___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-011-1-11
______AAGG___GGAACTAG___GGATCCAG
2. _GC-05-011-1-11
______TTGG___GGTTCCAA___AGAACCAA
3. _GC-05-011-1-11
______AAGG___GGAACTAG___GGATCCAG
4. _GC-05-011-1-11
______AAGG___GGAACTGG___AGAACCAG
5. _GC-05-011-1-11
______AAGG___GGAACTAG___GGATCCAG
6. _5111_3
__________________AA_________GG______AG
7. _5111_1_>_FP
__________________AA_________GG______AG
8. _5111_5_>_FP
__________________AA_________GG______AG
9. _5111_4
__________________AA_________AG______AG
10. _5111_2_>_FP
__________________TT_________AG______AA
11. _RUQ_1059
_______________GGAACT____________CC___
12. _RUQ_1059
TTAA___GGAA____________CT____________
13. _RUQ_1059
______TTGG___GGAAAGAG___GGATGG___
14. _RUQ_1059
_________GG___GGAA_______________CCAG
15. _RUQ_1059
__________________AA_________GG______AG
16. _P60_102
__________________AA_________GG______AG
17. _C0233
__________________AA_________GG______AG
18. _Marper_D393
__________________AA_________GG______AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-011-1-11
___CC___AACT___AAGGAGCG___CCTTAA
2. _GC-05-011-1-11
___AA___CCCT___AGGTGGGG___CCCTAA
3. _GC-05-011-1-11
___CC___AACT___AAGGAGCG___CCTTAA
4. _GC-05-011-1-11
___CC___CCTT___GGGTAACC___CCTTAA
5. _GC-05-011-1-11
___CC___AACT___AAGGAGCG___CCTTAA
6. _5111_3
_________AACT______GG___CG___CC______
7. _5111_1_>_FP
_________AACT______GG___CG___CC______
8. _5111_5_>_FP
_________AACT______GG___CG___CC______
9. _5111_4
_________CCTT______GT___CC___CC______
10. _5111_2_>_FP
_________CCCT______GT___GG___CC______
11. _RUQ_1059
___________________________CG___CCTTAA
12. _RUQ_1059
AA___CCAA___AG_________CGAACCTT___
13. _RUQ_1059
___CC___AA______AACCAGCG___CCAA___
14. _RUQ_1059
_________AACT______GG___CG___CCTT___
15. _RUQ_1059
_________AACT______GG___CG___CC______
16. _P60_102
_________AACT______GG___CG___CC______
17. _C0233
_________AACT______GG___CG___CC______
18. _Marper_D393
_________AACT______GG___CG___CC______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-011-1-11
TT_________AAAA___AACCCCGGAG___TT
2. _GC-05-011-1-11
CC_________AAAA___GGTTTTGTAG___TT
3. _GC-05-011-1-11
TT_________AAAA___AACCCCGGAG___TT
4. _GC-05-011-1-11
TT_________AAAA___AACTCCGGAG___TT
5. _GC-05-011-1-11
TT_________AAAA___AACCCCGGAG___TT
6. _5111_3
TT_________AA_______________GG_________
7. _5111_1_>_FP
TT_________AA_______________GG_________
8. _5111_5_>_FP
TT_________AA_______________GG_________
9. _5111_4
TT_________AA_______________GG_________
10. _5111_2_>_FP
CC_________AA_______________GT_________
11. _RUQ_1059
_______________________________________TT
12. _RUQ_1059
___CCGGCCAA___CC______CCGGAGCT___
13. _RUQ_1059
AA____________AA___AA______CCAG___AA
14. _RUQ_1059
TT________________________CCGGAG______
15. _RUQ_1059
TT_________AA_______________GG_________
16. _P60_102
TT_________AA_______________GG_________
17. _C0233
TT_________AA_______________GG_________
18. _Marper_D393
TT_________AA_______________GG_________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-011-1-11
GGTT___AA___CG___GGCCCCCCGGTTCG
2. _GC-05-011-1-11
TTTT___CC___CGAAGGGGTTGGAGCTGG
3. _GC-05-011-1-11
GGTT___AA___CG___GGCCCCCCGGTTCG
4. _GC-05-011-1-11
___TT___AA___CGAAGGCGCCCGAACTGG
5. _GC-05-011-1-11
GGTT___AA___CG___GGCCCCCCGGTTCG
6. _5111_3
_____________________GG___CC______TTCG
7. _5111_1_>_FP
_____________________GG___CC______TTCG
8. _5111_5_>_FP
_____________________GG___CC______TTCG
9. _5111_4
_____________________GG___CC______CTGG
10. _5111_2_>_FP
_____________________GG___TT______CTGG
11. _RUQ_1059
__________________GGCCGGCC____________
12. _RUQ_1059
______TTAAAATT___GG_________GG______
13. _RUQ_1059
CCAA___AA___CGGGCC___GGGGGGAACG
14. _RUQ_1059
___TT___AA_________GGCCCC___-______
15. _RUQ_1059
_____________________GG___CC______TTCG
16. _P60_102
_____________________GG___CC______TTCG
17. _C0233
_____________________GG___CC______TTCG
18. _Marper_D393
_____________________GG___CC______TTCG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-05-011-1-11
CCAATTAGCC______TTCC___CCGGGGAA
2. _GC-05-011-1-11
CTAACTAGCT______TTCC___CCAGTTTT
3. _GC-05-011-1-11
CCAATTAGCC______TTCC___CCGGGGAA
4. _GC-05-011-1-11
CCAATTAGTT______TTCC___CCAGGGAT
5. _GC-05-011-1-11
CCAATTAGCC______TTCC___CCGGGGAA
6. _5111_3
___AATTAG__________________CCGG___AA
7. _5111_1_>_FP
___AATTAG__________________CCGG___AA
8. _5111_5_>_FP
___AATTAG__________________CCGG___AA
9. _5111_4
___AATTAG__________________CCAG___AT
10. _5111_2_>_FP
___AACTAG__________________CCAG___TT
11. _RUQ_1059
______TT_______________CC___CC_________
12. _RUQ_1059
_________AGCCTTAA______CC___GG______
13. _RUQ_1059
GGAAAAAG_________AA______GGGGCCAA
14. _RUQ_1059
_________AGCC_______________CC___GG___
15. _RUQ_1059
___AATTAG__________________CCGG___AA
16. _P60_102
___AATTAG__________________CCGG___AA
17. _C0233
___AATTAG__________________CCGG___AA
18. _Marper_D393
___AATTAG__________________CCGG___AA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-05-011-1-11
CCGG___TTCCTTCTCCGT______CCTTTT
2. _GC-05-011-1-11
TTAG___ATCCCCTTTTTT______ACGTCC
3. _GC-05-011-1-11
CCGG___TTCCTTCTCCGT______CCTTTT
4. _GC-05-011-1-11
CCAA___TTCTCCTTCCGG______ACTTCT
5. _GC-05-011-1-11
CCGG___TTCCTTCTCCGT______CCTTTT
6. _5111_3
____________CC______CC____________TTTT
7. _5111_1_>_FP
____________CC______CC____________TTTT
8. _5111_5_>_FP
____________CC______CC____________TTTT
9. _5111_4
____________CT______CC____________TTCT
10. _5111_2_>_FP
____________CC______TT____________GTCC
11. _RUQ_1059
___GG___TT______________________________
12. _RUQ_1059
______CT___CC____________GGAA___TT___
13. _RUQ_1059
GGGG_________AAAG___AC_________AAAA
14. _RUQ_1059
___GG___TT________________________TT___
15. _RUQ_1059
____________CC______CC____________TTTT
16. _P60_102
____________CC______CC____________TTTT
17. _C0233
____________CC______CC____________TTTT
18. _Marper_D393
_____________________CC____________TTTT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-05-011-1-11
_________ACGG______TTCTCTGGGGCT___
2. _GC-05-011-1-11
______TT___GG______TTTTCTCGGGCC___
3. _GC-05-011-1-11
_________ACGG______TTCTCTGGGGCT___
4. _GC-05-011-1-11
______TTAAGG______CTTTCTCGAGCT___
5. _GC-05-011-1-11
_________ACGG______TTCTCTGGGGCT___
6. _5111_3
_________AC_________TT___CTGGGGCT___
7. _5111_1_>_FP
_________AC_________TT___CTGGGGCT___
8. _5111_5_>_FP
_________AC_________TT___CTGGGGCT___
9. _5111_4
_________AA_________CT___CTCGAGCT___
10. _5111_2_>_FP
_____________________TT___CTCGGGCC___
11. _RUQ_1059
________________________CT___CC_________
12. _RUQ_1059
GGTT_________GGGG_________GG______CT
13. _RUQ_1059
______GGACGG______AAAGAGCCGGAG___
14. _RUQ_1059
______CC_______________CTCTGGGG______
15. _RUQ_1059
_________AC_________TT___CTGGGGCT___
16. _P60_102
_________AC_________TT___CTGGGGCT___
17. _C0233
_________AC_________TT___CTGGGGCT___
18. _Marper_D393
_________AC_________TT___CTGGGGCT___
 127 128 129 130 131 132         
1. _GC-05-011-1-11
___CCAGCCAAACX_XX_XX_XX_XX_XX_XX_XX_X
2. _GC-05-011-1-11
___CCAACCAGCCX_XX_XX_XX_XX_XX_XX_XX_X
3. _GC-05-011-1-11
___CCAGCCAAACX_XX_XX_XX_XX_XX_XX_XX_X
4. _GC-05-011-1-11
___ACAAACAGAAX_XX_XX_XX_XX_XX_XX_XX_X
5. _GC-05-011-1-11
___CCAGCCAAACX_XX_XX_XX_XX_XX_XX_XX_X
6. _5111_3
__________________X_XX_XX_XX_XX_XX_XX_XX_X
7. _5111_1_>_FP
__________________X_XX_XX_XX_XX_XX_XX_XX_X
8. _5111_5_>_FP
__________________X_XX_XX_XX_XX_XX_XX_XX_X
9. _5111_4
__________________X_XX_XX_XX_XX_XX_XX_XX_X
10. _5111_2_>_FP
__________________X_XX_XX_XX_XX_XX_XX_XX_X
11. _RUQ_1059
__________________X_XX_XX_XX_XX_XX_XX_XX_X
12. _RUQ_1059
AT_______________X_XX_XX_XX_XX_XX_XX_XX_X
13. _RUQ_1059
___CC___CCAAACX_XX_XX_XX_XX_XX_XX_XX_X
14. _RUQ_1059
__________________X_XX_XX_XX_XX_XX_XX_XX_X
15. _RUQ_1059
__________________X_XX_XX_XX_XX_XX_XX_XX_X
16. _P60_102
__________________X_XX_XX_XX_XX_XX_XX_XX_X
17. _C0233
__________________X_XX_XX_XX_XX_XX_XX_XX_X
18. _Marper_D393
__________________X_XX_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_121_[PER] GC-05-011-1-11
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._PA_121_[PER] GC-05-011-1-11
Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018
3._PA_121_[PER] GC-05-011-1-11
Location: Tree: 3
Notes: 3
 Mars, 2018
4._PA_121_[PER] GC-05-011-1-11
Location: Tree: 4
Notes: 4
 Mars, 2018
5._PA_121_[PER] GC-05-011-1-11
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018
6._PA_121_[PER]
Location: 5111 3
 Dapeng Zhang, 2016
7._PA_121_[PER]
Location: 5111 1 > FP
 Dapeng Zhang, 2016
8._PA_121_[PER]
Location: 5111 5 > FP
 Dapeng Zhang, 2016
9._PA_121_[PER]
Location: 5111 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
10._PA_121_[PER]
Location: 5111 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

11._PA_121_[PER] RUQ 1059
 Jocelyn De Wever et al., 2019
12._PA_121_[PER] RUQ 1059
 Lambert Motilal, 2023
13._PA_121_[PER] RUQ 1059
Notes: Reading_Collection
 Mars, 2018
14._PA_121_[PER] RUQ 1059
 Dapeng Zhang, 2014
15._PA_121_[PER] RUQ 1059
 Dapeng Zhang, 2016

Cocoa Research Institute of Ghana (CRIG) Ghana

16._PA_121_[PER]
Location: P60 102
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

17._PA_121_[PER]
Location: C0233
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

18._PA_121_[PER]
Location: Marper D393
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP606 57TcSNP619 58TcSNP640 59TcSNP642 60TcSNP644
61TcSNP645 62TcSNP653 63TcSNP660 64TcSNP689 65TcSNP701
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP860 78TcSNP872 79TcSNP878 80TcSNP891
81TcSNP894 82TcSNP899 83TcSNP917 84TcSNP929 85TcSNP944
86TcSNP953 87TcSNP994 88TcSNP998 89TcSNP999 90TcSNP1010
91TcSNP1019 92TcSNP1034 93TcSNP1041 94TcSNP1053 95TcSNP1060
96TcSNP1062 97TcSNP1063 98TcSNP1075 99TcSNP1096 100TcSNP1111
101TcSNP1112 102TcSNP1126 103TcSNP1144 104TcSNP1149 105TcSNP1156
106TcSNP1165 107TcSNP1175 108TcSNP1205 109TcSNP1230 110TcSNP1242
111TcSNP1253 112TcSNP1270 113TcSNP1275 114TcSNP1293 115TcSNP1309
116TcSNP1350 117TcSNP1383 118TcSNP1401 119TcSNP1404 120TcSNP1414
121TcSNP1439 122TcSNP1442 123TcSNP1458 124TcSNP1484 125TcSNP1520
126TcSNP1524 127TcSNP1527 128Tcm001s00947643 129Tcm002s20575712 130Tcm003s01336581
131Tcm003s07402719 132Tcm006s26664133