SNP Profiles of SCA-11   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
1._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
2._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
3._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
4._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
5._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
6._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
7._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
8._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
9._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
10._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
11._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
12._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
13._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
14._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
15._GC-08-157-3-56
AT_CCCCAGAGTTTTCCTTAGTTTTTT
16._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTT_TT
17._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
18._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
19._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTT_TTTTTT
20._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
21._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
22._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
23._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
24._GC-08-157-3-56
ATCCCCCCAG_TTTTCCTTAGTTTTTT
25._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
26._SCA_11
ATCCCCCC____CCTTAG_TT_
27._SCA_11
ATCCCCCC____CCTTAG_TT_
28._SCA_11
ATCCCCCC____CCTTAG_TT_
29._SCA_11
ATCCCCCC____CCTTAG_TT_
30._SCA_11
ATCCCCCC____CCTTAG_TT_
31._SCA_11
ATCCCCCC____CCTTAG_TT_
32._SCA_11
ATCCCCCC____CCTTAG_TT_
33._SCA_11
ATCCCCCC____CCTTAG_TT_
34._SCA_11
ATCCCCCC____CCTTAG_TT_
35._SCA_11
ATCCCCCC____CCTTAG_TT_
36._SCA_11
ATCCCCCC____CCTTAG_TT_
37._SCA_11
ATCCCCCC____CCTTAG_TT_
38._SCA_11
ATCCCCCC____CCTTAG_TT_
39._SCA_11
ATCCCCCC____CCTTAG_TT_
40._SCA_11
ATCCCCCC____CCTTAG_TT_
41._SCA_11
ATCCCCCC____CCTTAG_TT_
42._SCA_11
ATCCCCCC____CCTTAG_TT_
43._SCA_11
ATCCCCCC____CCTTAG_TT_
44._SCA_11
ATCCCCCC____CCTTAG_TT_
45._SCA_11
ATCCCCCC____CCTTAG_TT_
46._SCA_11
ATCCCCCC____CCTTAG_TT_
47._SCA_11
ATCCCCCC____CCTT__TT_
48._SCA_11
ATCCCCCC____CCTTAG___
49._SCA_11
AT_CCCC____CCTTAG_TT_
50._SCA_11
ATCCCCCC____CCTTAG_TT_
51._SCA_11
ATCCCCCC____CCTTAG_TT_
52._RUQ_374
__CCCC__CC_CC__TTTT_
53._RUQ_374
AACCCCCC____CCCTAA_TT_
54._SCA_11
AACCCCCC____CCTTAA_TT_
55._RUQ_1686
ATCC_CCAGAG_AAGG_AGAAAAAA
56._RUQ_1686
___AA____CC___CT_
57._MITC-000057
AACC_CCGGAA_AAGG_AAAAAAAA
58._SCA_11
AAAATTCC____CTTTGG_CC_
 1516171819202122232425262728
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
11._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
13._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
14._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
15._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
16._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
17._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
18._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
19._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
20._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
21._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
22._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
23._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
24._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
25._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
26._SCA_11
___GG__CC____AAAA_
27._SCA_11
___GG__CC____AAAA_
28._SCA_11
___GG__CC____AAAA_
29._SCA_11
___GG__CC____AAAA_
30._SCA_11
___GG__CC____AAAA_
31._SCA_11
___GG__CC____AAAA_
32._SCA_11
___GG__CC____AAAA_
33._SCA_11
___GG__CC____AAAA_
34._SCA_11
___GG__CC____AAAA_
35._SCA_11
___GG__CC____AAAA_
36._SCA_11
___GG__CC____AAAA_
37._SCA_11
___GG__CC____AAAA_
38._SCA_11
___GG__CC____AAAA_
39._SCA_11
___GG__CC____AAAA_
40._SCA_11
___GG__CC____AAAA_
41._SCA_11
___GG__CC____AAAA_
42._SCA_11
___GG__CC____AAAA_
43._SCA_11
___GG__CC____AAAA_
44._SCA_11
___GG__CC____AAAA_
45._SCA_11
___GG__CC____AAAA_
46._SCA_11
___GG__CC____AAAA_
47._SCA_11
___GG__CC____AAAA_
48._SCA_11
___GG__CC____AAAA_
49._SCA_11
___GG__CC____AAAA_
50._SCA_11
___GG__CC____AAAA_
51._SCA_11
___GG__CC____AAAA_
52._RUQ_374
_____GG____GG_AAGG
53._RUQ_374
___GG__CC____AAAA_
54._SCA_11
___GG__CC____AAAA_
55._RUQ_1686
ATAAAAGGGG_CCGGAAAGGGAAAACC
56._RUQ_1686
__GG__GG_CT__GG_ATCC
57._MITC-000057
AAACAAGGGG_CCGGAGGGGGAAAA_
58._SCA_11
___AA__GG____TTAT_
 2930313233343536373839404142
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
13._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
14._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
15._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
16._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
17._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTT_AGCCGG
18._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
19._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
20._GC-08-157-3-56
_TTTTTTGGCGCCAAGGTTTTAGCCGG
21._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
22._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCC_
23._GC-08-157-3-56
CCTTTTTTGGCG_AAGGTTTTAGCCGG
24._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
25._GC-08-157-3-56
_TTTTTTGGCGCCAAGGTTTTAGCCGG
26._SCA_11
CCTT___CG_AAGG__AG__
27._SCA_11
CCTT___CG_AAGG__AG__
28._SCA_11
CCTT___CG_AAGG__AG__
29._SCA_11
CCTT___CG_AAGG__AG__
30._SCA_11
CCTT___CG_AAGG__AG__
31._SCA_11
CCTT___CG_AAGG__AG__
32._SCA_11
CCTT___CG_AAGG__AG__
33._SCA_11
CCTT___CG_AAGG__AG__
34._SCA_11
CCTT___CG_AAGG__AG__
35._SCA_11
CCTT___CG_AAGG__AG__
36._SCA_11
CCTT___CG_AAGG__AG__
37._SCA_11
CCTT___CG_AAGG__AG__
38._SCA_11
CCTT___CG_AAGG__AG__
39._SCA_11
CCTT___CG_AAGG__AG__
40._SCA_11
CCTT___CG_AAGG__AG__
41._SCA_11
CCTT___CG_AAGG__AG__
42._SCA_11
CCTT___CG_AAGG__AG__
43._SCA_11
CCTT___CG_AAGG__AG__
44._SCA_11
CCTT___CG_AAGG__AG__
45._SCA_11
CCTT___CG_AAGG__AG__
46._SCA_11
_TT___CG_AAGG__AG__
47._SCA_11
CCTT___CG_AAGG__AG__
48._SCA_11
CCTT___CG_AAGG__AG__
49._SCA_11
CCTT___CG_AAGG__AG__
50._SCA_11
CCTT___CG_AAGG__AG__
51._SCA_11
_TT___CG_AAGG__AG__
52._RUQ_374
CC___AGCCCCAAGG__AACC_
53._RUQ_374
CCTT___CC_AAGG__AG__
54._SCA_11
CCTT___CC_AAGG__AA__
55._RUQ_1686
GGTTAAAAGGCGCCAACCAAAAAGGGGG
56._RUQ_1686
GG___GGGG____TT_CC_
57._MITC-000057
GGTTAAAAAGCCCCAACCAAAAAAGGGG
58._SCA_11
CGAA___CC_AATT__AA__
 4344454647484950515253545556
_Input profile
CCGGTTTTGGAGAACCCCAAAAGGTTCC
1._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
2._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
3._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
4._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
5._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
6._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
7._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
8._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
9._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
10._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
11._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
12._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
13._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
14._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
15._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
16._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTCC
17._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
18._GC-08-157-3-56
CCGGTTTTGGAG_CCCCAAAAGGTTCC
19._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
20._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
21._GC-08-157-3-56
CCGGTTTTGGAG_CCCCAAAAGGTTCC
22._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
23._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
24._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
25._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTCC
26._SCA_11
___TT________TTCC
27._SCA_11
___TT________TTCC
28._SCA_11
___TT________TTCC
29._SCA_11
___TT________TTCC
30._SCA_11
___TT________TTCC
31._SCA_11
___TT________TTCC
32._SCA_11
___TT________TTCC
33._SCA_11
___TT________TTCC
34._SCA_11
___TT________TTCC
35._SCA_11
___TT________TTCC
36._SCA_11
___TT________TTCC
37._SCA_11
___TT________TTCC
38._SCA_11
___TT________TTCC
39._SCA_11
___TT________TTCC
40._SCA_11
___TT________TTCC
41._SCA_11
___TT________TTCC
42._SCA_11
___TT________TTCC
43._SCA_11
___TT________TTCC
44._SCA_11
___TT________TTCC
45._SCA_11
___TT________TTCC
46._SCA_11
___TT________TTCC
47._SCA_11
___TT________TTCC
48._SCA_11
___TT________TTCC
49._SCA_11
___TT________TTCC
50._SCA_11
___TT________TTCC
51._SCA_11
___TT________TTCC
52._RUQ_374
_GGTT__AA______TT_
53._RUQ_374
___TT________TTCC
54._SCA_11
___TT________TTCC
55._RUQ_1686
GGCC_AA_AGAAGG_AAAACCAAGG
56._RUQ_1686
__TT_AA_______CC_
57._MITC-000057
GGCC_AA_AAAAGG_AAAACCAAGG
58._SCA_11
___CC________CTCT
 5758596061626364656667686970
_Input profile
TTCCCCTTCCCGGGAAAAGGGGAACTCC
1._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
2._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
3._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
4._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
5._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
6._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
7._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
8._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
9._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
10._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
11._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
12._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
13._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
14._GC-08-157-3-56
TTCCCCTTCCCGGGAAAA_GGAACTCC
15._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
16._GC-01-117-6-14
TTCCCCTTCCCGGGAAAAGGGGAACTCC
17._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
18._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
19._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
20._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
21._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
22._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
23._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
24._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
25._GC-08-157-3-56
TTCCCCTTCCCGGGAAAAGGGGAACTCC
26._SCA_11
_CC_TTCCCG_AAAAGGGG___
27._SCA_11
_CC_TTCCCG_AAAAGGGG___
28._SCA_11
_CC_TTCCCG_AAAAGGGG___
29._SCA_11
_CC_TTCCCG_AAAAGGGG___
30._SCA_11
_CC_TTCCCG_AAAAGGGG___
31._SCA_11
_CC_TTCCCG_AAAAGGGG___
32._SCA_11
_CC_TTCCCG_AAAAGGGG___
33._SCA_11
_CC_TTCCCG_AAAAGGGG___
34._SCA_11
_CC_TTCCCG_AAAAGGGG___
35._SCA_11
_CC_TTCCCG_AAAAGGGG___
36._SCA_11
_CC_TTCCCG_AAAAGGGG___
37._SCA_11
_CC_TTCCCG_AAAAGGGG___
38._SCA_11
_CC_TTCCCG_AAAAGGGG___
39._SCA_11
_CC_TTCCCG_AAAAGGGG___
40._SCA_11
_CC_TTCCCG_AAAAGGGG___
41._SCA_11
_CC_TTCCCG_AAAAGGGG___
42._SCA_11
_CC_TTCCCG_AAAAGGGG___
43._SCA_11
_CC_TTCCCG_AAAAGGGG___
44._SCA_11
_CC_TTCCCG_AAAAGGGG___
45._SCA_11
_CC_TTCCCG_AAAAGGGG___
46._SCA_11
_CC_TTCCCG_AAAAGGGG___
47._SCA_11
_CC_TTCCCG_AAAAGGGG___
48._SCA_11
_CC_TTCCCG_AAAAGGGG___
49._SCA_11
_CC_TTCCCG_AAAAGGGG___
50._SCA_11
_CC_TTCCCG_AAAA_GG___
51._SCA_11
_CC_TTCCCG_AAAAGGGG___
52._RUQ_374
TTCGCCTTCC_GGCCAGGGGGAA__
53._RUQ_374
_CG_TTCCCG_ACAGGGGG___
54._SCA_11
_CG_TTCCCG_ACAGGGGG___
55._RUQ_1686
AAGGGGAACCCGGGAAAACCCCAA__
56._RUQ_1686
_CGCC_AA_GGACAG____CG
57._MITC-000057
AACGGGAACCCGGGACAGCCCCAA__
58._SCA_11
_CC_CTACGG_CCAATTGG___
 7172737475767778798081828384
_Input profile
AACTCCGGCCCCAAAACCCCAACCTTCC
1._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
2._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
3._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
4._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
5._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
6._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
7._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
8._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
9._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
10._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
11._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
12._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
13._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
14._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
15._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
16._GC-01-117-6-14
AACTCCGGCCCCAAAACCCCAACCTTCC
17._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
18._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
19._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
20._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
21._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
22._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
23._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
24._GC-08-157-3-56
AACTCCGGCCCCAAAACCCCAACCTTCC
25._GC-08-157-3-56
AA_CCGGCCCCAAAACCCCAACCTTCC
26._SCA_11
AACT_____AACC___TTCC
27._SCA_11
AACT_____AACC___TTCC
28._SCA_11
AACT_____AACC___TTCC
29._SCA_11
AACT_____AACC___TTCC
30._SCA_11
AACT_____AACC___TTCC
31._SCA_11
AACT_____AACC___TTCC
32._SCA_11
AACT_____AACC___TTCC
33._SCA_11
AACT_____AACC___TTCC
34._SCA_11
AACT_____AACC___TTCC
35._SCA_11
AACT_____AACC___TTCC
36._SCA_11
AACT_____AACC___TTCC
37._SCA_11
AACT_____AACC___TTCC
38._SCA_11
AACT_____AACC___TTCC
39._SCA_11
AACT_____AACC___TTCC
40._SCA_11
AACT_____AACC___TTCC
41._SCA_11
AACT_____AACC___TTCC
42._SCA_11
AACT_____AACC___TTCC
43._SCA_11
AACT_____AACC___TTCC
44._SCA_11
AACT_____AACC___TTCC
45._SCA_11
AACT_____AACC___TTCC
46._SCA_11
AACT_____AACC___TTCC
47._SCA_11
AACT_____AACC___TTCC
48._SCA_11
AACT_____AACC___TTCC
49._SCA_11
AACT_____AACC___TTCC
50._SCA_11
AACT_____AACC___TTCC
51._SCA_11
AA______AACC___TTCC
52._RUQ_374
_______AACC__CCTT_
53._RUQ_374
GGCC_____AACC___TTCC
54._SCA_11
GGCC_____AACC___TTCC
55._RUQ_1686
_AGCCGGCCCC_AAGGGGAACCAAGG
56._RUQ_1686
________GG____CT
57._MITC-000057
_GGCCGGCCCC_AAGGGGAACCAAGG
58._SCA_11
AATT_____CCGG___CCCT
 858687888990919293     
_Input profile
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
1._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
2._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
3._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
4._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
5._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
6._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
7._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
8._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
9._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
10._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
11._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
12._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
13._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
14._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
15._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
16._GC-01-117-6-14
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
17._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
18._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
19._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
20._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
21._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
22._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
23._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
24._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
25._GC-08-157-3-56
CCCCGGCCTTGGCCTTGGX_XX_XX_XX_XX_X
26._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
27._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
28._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
29._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
30._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
31._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
32._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
33._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
34._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
35._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
36._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
37._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
38._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
39._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
40._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
41._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
42._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
43._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
44._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
45._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
46._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
47._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
48._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
49._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
50._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
51._SCA_11
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
52._RUQ_374
__GGCCCTGT___X_XX_XX_XX_XX_X
53._RUQ_374
CC_GG_CTGTCT__X_XX_XX_XX_XX_X
54._SCA_11
CC_GG_CTGTCT__X_XX_XX_XX_XX_X
55._RUQ_1686
_GG__AACCGGAAGGX_XX_XX_XX_XX_X
56._RUQ_1686
_________X_XX_XX_XX_XX_X
57._MITC-000057
_GG__AGACAGAAGGX_XX_XX_XX_XX_X
58._SCA_11
TT_AG_CTGGTT__X_XX_XX_XX_XX_X

Input profile: SCA_11 GC-01-117-6-14

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

5._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._SCA_11 GC-01-117-6-14

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

14._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

16._SCA_11 GC-01-117-6-14

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

24._SCA_11 GC-08-157-3-56

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
91 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

27._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

28._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

29._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

30._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

32._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

33._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

34._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

35._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

36._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

37._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

38._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

39._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

40._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

41._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

42._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

43._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

44._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

45._SCA_11

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

47._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

48._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

49._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
38 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_374

84.1 %
41 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

53._SCA_11 RUQ_374

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

54._SCA_11

83.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

55._SCA_11 RUQ_1686

50.6 %
79 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

56._SCA_11 RUQ_1686

50 %
26 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

57._SCA_11 MITC-000057

43.6 %
78 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

58._SCA_11

40 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240