SNP Profiles of ICS-43   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._ICS_43
AACCCC____CCCCGG_CC__
11._ICS_43
AACCCC____CCCCGG_CC__
12._ICS_43
AACCCC____CCCCGG_CC__
13._ICS_43
AACCCC____CCCCGG_CC__
14._ICS_43
AACCCC____CCCCGG_CC__
15._ICS_43
AACCCC____CCCCGG_CC__
16._ICS_43
AACCCC____CCCCGG_CC__
17._ICS_43
AACCCC____CCCCGG_CC__
18._ICS_43
AACCCC____CCCCGG_CC__
19._ICS_43
AACCCC____CCCCGG_CC__
20._ICS43
__AA____CT___CC__
21._RUQ_144
AATTAA____CTCTAG_CC__
22._RUQ_144
_TTAA__CC_CT__CTCC__
23._ICS_43
AATTAA____CTCTAG_CC__
24._RUQ_144
__AA__CC________
25._RUQ_144
AA_AAAGAG_GGAG_GGAGGGAGAT
26._ICS_43_Fld#_164_Plt#_1
AA_AAAGAG_GGAG_GGAGGGAGAT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGAAAACCGGAA
1._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
2._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
3._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
4._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
5._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
6._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
7._GC-01-051-3-06
CCGGGGCCGGTTAA_GGAAAACCGGAA
8._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
9._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
10._ICS_43
_GG__GG____AAAA_GGAA
11._ICS_43
_GG__GG____AAAA_GGAA
12._ICS_43
_GG__GG____AAAA_GGAA
13._ICS_43
_GG__GG____AAAA_GGAA
14._ICS_43
_GG__GG____AAAA_GGAA
15._ICS_43
_GG__GG____AAAA_GGAA
16._ICS_43
_GG__GG____AAAA_GGAA
17._ICS_43
_GG__GG____AAAA_GGAA
18._ICS_43
_GG__GG____AAAA_GGAA
19._ICS_43
_GG__GG____AAAA_GGAA
20._ICS43
___CG_CT__GG_AACCCC_
21._RUQ_144
____GG____TTAA_GGAA
22._RUQ_144
___CG____GG_AACCGG_
23._ICS_43
_AA__GG____TTAA_GGAA
24._RUQ_144
_AATT_________GG_
25._RUQ_144
CCAACC_GGAGAGAAGGTTAAGGCCAA
26._ICS_43_Fld#_164_Plt#_1
CCAACC_GGAGAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._ICS_43
___CC_GGTT__GG____
11._ICS_43
___CC_GGTT__GG____
12._ICS_43
___CC_GGTT__GG____
13._ICS_43
___CC_GGTT__GG____
14._ICS_43
___CC_GGTT__GG____
15._ICS_43
___CC_GGTT__GG____
16._ICS_43
___CC_GGTT__GG____
17._ICS_43
___CC_GGTT__GG____
18._ICS_43
___CC_GGTT__GG____
19._ICS_43
___CC_GGTT__GG____
20._ICS43
__AGCC____GT_CT___
21._RUQ_144
___CC_AAGT__AG____
22._RUQ_144
__AGCCACAAGT__AGCT__GT
23._ICS_43
___CC_AAGT__AG____
24._RUQ_144
___CC_AA____CT___
25._RUQ_144
AACCAGCCACAAACCCACAGAGAAGGAC
26._ICS_43_Fld#_164_Plt#_1
AACCAGCCACAAACCCACAGAGAAGGAC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._ICS_43
_TT_________TTCC_
11._ICS_43
_TT_________TTCC_
12._ICS_43
_TT_________TTCC_
13._ICS_43
_TT_________TTCC_
14._ICS_43
_TT_________TTCC_
15._ICS_43
_TT_________TTCC_
16._ICS_43
_TT_________TTCC_
17._ICS_43
_TT_________TTCC_
18._ICS_43
_TT_________TTCC_
19._ICS_43
_TT_________TTCC_
20._ICS43
AT_AG________CT__
21._RUQ_144
_CC_________CTCT_
22._RUQ_144
AT__AG______CTCT_GT
23._ICS_43
_CC_________CTCT_
24._RUQ_144
___AG__________
25._RUQ_144
_GG_AGAGGG_GGGGACAGAGAGAC
26._ICS_43_Fld#_164_Plt#_1
_GG_AGAGGG_GGGGACAGAGAGAC
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGGGAACCCC
1._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
2._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
3._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
4._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
5._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
6._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
7._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
8._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGGGAACCCC
9._GC-01-051-3-06
GGCCCCCCAAGGGGAA_GGGGAACCCC
10._ICS_43
_CC_CCAAGG_AAGGGGGG___
11._ICS_43
_CC_CCAAGG_AAGGGGGG___
12._ICS_43
_CC_CCAAGG_AAGGGGGG___
13._ICS_43
_CC_CCAAGG_AAGGGGGG___
14._ICS_43
_CC_CCAAGG_AAGGGGGG___
15._ICS_43
_CC_CCAAGG_AAGGGGGG___
16._ICS_43
_CC_CCAAGG_AAGGGGGG___
17._ICS_43
_CC_CCAAGG_AAGGGGGG___
18._ICS_43
_CC_CCAAGG_AAGGGGGG___
19._ICS_43
_CC_CCAAGG_AA_GGGG___
20._ICS43
_CGCT_AC_AGACGG____CC
21._RUQ_144
_CG_CTACGG_ACGGTTGT___
22._RUQ_144
-CGCTCTAC_AGACGGTTGTAG__
23._ICS_43
___CTACGG_ACGGTTGT___
24._RUQ_144
GG______ACGG_GTAG__
25._RUQ_144
GGCGAGAGACGGAGACGGAAACAG__
26._ICS_43_Fld#_164_Plt#_1
GGCGAGAGACGGAGACGGAAACAG__
 7172737475767778798081828384
_Input profile
AACCAAAGCCCCGGAACCCCTTAACCCC
1._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
2._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
3._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
4._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
5._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
6._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
7._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
8._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
9._GC-01-051-3-06
AACCAAAGCCCCGGAACCCCTTAACCCC
10._ICS_43
AACC_____AACC___CCCC
11._ICS_43
AACC_____AACC___CCCC
12._ICS_43
AACC_____AACC___CCCC
13._ICS_43
AACC_____AACC___CCCC
14._ICS_43
AACC_____AACC___CCCC
15._ICS_43
AACC_____AACC___CCCC
16._ICS_43
AACC_____AACC___CCCC
17._ICS_43
AACC_____AACC___CCCC
18._ICS_43
AACC_____AACC___CCCC
19._ICS_43
AACC_____AACC___CCCC
20._ICS43
________CC____CT
21._RUQ_144
AGTT_____CCGG___TTCT
22._RUQ_144
_______CCGG__CCTT_
23._ICS_43
AGTT_____CCGG___TTCT
24._RUQ_144
AG______CCGG__CC__
25._RUQ_144
_AACCAGCCAA_CCCCGGATCCAAAG
26._ICS_43_Fld#_164_Plt#_1
_AACCAGCCAA_CCCCGGATCCAAAG
 858687888990919293     
_Input profile
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-051-3-06
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-051-3-06
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-051-3-06
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-051-3-06
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-051-3-06
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-051-3-06
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-051-3-06
CCCCGGCCCCTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-051-3-06
CCCCGG_CCTTTTAAGGX_XX_XX_XX_XX_X
9._GC-01-051-3-06
CCCC_CCCCTTTTAAGGX_XX_XX_XX_XX_X
10._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
11._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
12._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
13._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
14._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
15._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
16._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
17._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
18._ICS_43
CC_GG_CCTTTT__X_XX_XX_XX_XX_X
19._ICS_43
CC___CCTTTT__X_XX_XX_XX_XX_X
20._ICS43
_________X_XX_XX_XX_XX_X
21._RUQ_144
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
22._RUQ_144
__AG-CTGT___X_XX_XX_XX_XX_X
23._ICS_43
CT_AG_CTGTTT__X_XX_XX_XX_XX_X
24._RUQ_144
CT__CT_GT___X_XX_XX_XX_XX_X
25._RUQ_144
_AA__AGAAAATTGGX_XX_XX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
_AA__AGAAAATTGGX_XX_XX_XX_XX_X

Input profile: ICS_43 GC-01-051-3-06

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

1._ICS_43 GC-01-051-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

2._ICS_43 GC-01-051-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._ICS_43 GC-01-051-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_43 GC-01-051-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._ICS_43 GC-01-051-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._ICS_43 GC-01-051-3-06

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

11._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

13._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

14._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

15._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

16._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

17._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

18._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

19._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

20._ICS_43 ICS43

62 %
25 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_43 RUQ_144

50 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._ICS_43 RUQ_144

50 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._ICS_43

48.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

24._ICS_43 RUQ_144

45.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._ICS_43 RUQ_144

31 %
79 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

31 %
79 shared markers

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USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240