SNP Profiles of ICS-43   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._ICS_43
AACCCC____CCCCGG_CC__
11._ICS_43
AACCCC____CCCCGG_CC__
12._ICS_43
AACCCC____CCCCGG_CC__
13._ICS_43
AACCCC____CCCCGG_CC__
14._ICS_43
AACCCC____CCCCGG_CC__
15._ICS_43
AACCCC____CCCCGG_CC__
16._ICS_43
AACCCC____CCCCGG_CC__
17._ICS_43
AACCCC____CCCCGG_CC__
18._ICS_43
AACCCC____CCCCGG_CC__
19._ICS_43
AACCCC____CCCCGG_CC__
20._ICS43
__AA____CT___CC__
21._RUQ_144
_TTAA__CC_CT__CTCC__
22._RUQ_144
AATTAA____CTCTAG_CC__
23._ICS_43
AATTAA____CTCTAG_CC__
24._RUQ_144
__AA__CC________
25._RUQ_144
AA_AAAGAG_GGAG_GGAGGGAGAT
26._ICS_43_Fld#_164_Plt#_1
AA_AAAGAG_GGAG_GGAGGGAGAT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGAAAACCGGAA
1._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
2._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
3._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
4._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
5._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
6._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
7._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
8._GC-01-051-3-06
CCGGGGCCGGTTAATTGGAAAACCGGAA
9._GC-01-051-3-06
CCGGGGCCGGTTAA_GGAAAACCGGAA
10._ICS_43
_GG__GG____AAAA_GGAA
11._ICS_43
_GG__GG____AAAA_GGAA
12._ICS_43
_GG__GG____AAAA_GGAA
13._ICS_43
_GG__GG____AAAA_GGAA
14._ICS_43
_GG__GG____AAAA_GGAA
15._ICS_43
_GG__GG____AAAA_GGAA
16._ICS_43
_GG__GG____AAAA_GGAA
17._ICS_43
_GG__GG____AAAA_GGAA
18._ICS_43
_GG__GG____AAAA_GGAA
19._ICS_43
_GG__GG____AAAA_GGAA
20._ICS43
___CG_CT__GG_AACCCC_
21._RUQ_144
___CG____GG_AACCGG_
22._RUQ_144
____GG____TTAA_GGAA
23._ICS_43
_AA__GG____TTAA_GGAA
24._RUQ_144
_AATT_________GG_
25._RUQ_144
CCAACC_GGAGAGAAGGTTAAGGCCAA
26._ICS_43_Fld#_164_Plt#_1
CCAACC_GGAGAGAAGGTTAAGGCCAA
 2930313233343536373839404142
_Input profile
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
1._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
2._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
3._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
4._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
5._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
6._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
7._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
8._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
9._GC-01-051-3-06
TTTTGGCCCCGGTTGGGGGGCCGGCCGG
10._ICS_43
___CC_GGTT__GG____
11._ICS_43
___CC_GGTT__GG____
12._ICS_43
___CC_GGTT__GG____
13._ICS_43
___CC_GGTT__GG____
14._ICS_43
___CC_GGTT__GG____
15._ICS_43
___CC_GGTT__GG____
16._ICS_43
___CC_GGTT__GG____
17._ICS_43
___CC_GGTT__GG____
18._ICS_43
___CC_GGTT__GG____
19._ICS_43
___CC_GGTT__GG____
20._ICS43
__AGCC____GT_CT___
21._RUQ_144
__AGCCACAAGT__AGCT__GT
22._RUQ_144
___CC_AAGT__AG____
23._ICS_43
___CC_AAGT__AG____
24._RUQ_144
___CC_AA____CT___
25._RUQ_144
AACCAGCCACAAACCCACAGAGAAGGAC
26._ICS_43_Fld#_164_Plt#_1
AACCAGCCACAAACCCACAGAGAAGGAC
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGGGTTTTTTCCTT
1._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
2._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
3._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
4._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
5._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
6._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
7._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
8._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
9._GC-01-051-3-06
TTTTAAGGAACCCCGGGGTTTTTTCCTT
10._ICS_43
_TT_________TTCC_
11._ICS_43
_TT_________TTCC_
12._ICS_43
_TT_________TTCC_
13._ICS_43
_TT_________TTCC_
14._ICS_43
_TT_________TTCC_
15._ICS_43
_TT_________TTCC_
16._ICS_43
_TT_________TTCC_
17._ICS_43
_TT_________TTCC_
18._ICS_43
_TT_________TTCC_
19._ICS_43
_TT_________TTCC_
20._ICS43
AT_AG________CT__
21._RUQ_144
AT__AG______CTCT_GT
22._RUQ_144
_CC_________CTCT_
23._ICS_43
_CC_________CTCT_
24._RUQ_144
___AG__________
25._RUQ_144
_GG_AGAGGG_GGGGACAGAGAGAC
26._ICS_43_Fld#_164_Plt#_1
_GG_AGAGGG_GGGGACAGAGAGAC
 5758596061626364656667686970
_Input profile
GGCCCCCCAAGGGGAAGGGGAACCCCAA
1._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
2._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
3._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
4._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
5._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
6._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
7._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
8._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
9._GC-01-051-3-06
GGCCCCCCAAGGGGAAGGGGAACCCCAA
10._ICS_43
_CC_CCAAGG_AAGGGG___AA
11._ICS_43
_CC_CCAAGG_AAGGGG___AA
12._ICS_43
_CC_CCAAGG_AAGGGG___AA
13._ICS_43
_CC_CCAAGG_AAGGGG___AA
14._ICS_43
_CC_CCAAGG_AAGGGG___AA
15._ICS_43
_CC_CCAAGG_AAGGGG___AA
16._ICS_43
_CC_CCAAGG_AAGGGG___AA
17._ICS_43
_CC_CCAAGG_AAGGGG___AA
18._ICS_43
_CC_CCAAGG_AAGGGG___AA
19._ICS_43
_CC_CCAAGG_AAGGGG___AA
20._ICS43
_CGCT_AC_AGAC____CC_
21._RUQ_144
-CGCTCTAC_AGACTTGTAG___
22._RUQ_144
_CG_CTACGG_ACTTGT___AG
23._ICS_43
___CTACGG_ACTTGT___AG
24._RUQ_144
GG______AC_GTAG__AG
25._RUQ_144
GGCGAGAGACGGAGACAAACAG___
26._ICS_43_Fld#_164_Plt#_1
GGCGAGAGACGGAGACAAACAG___
 7172737475767778798081828384
_Input profile
CCAAAGCCCCGGAACCCCTTAACCCCCC
1._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
2._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
3._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
4._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
5._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
6._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
7._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
8._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
9._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
10._ICS_43
CC_____AACC___CCCCCC
11._ICS_43
CC_____AACC___CCCCCC
12._ICS_43
CC_____AACC___CCCCCC
13._ICS_43
CC_____AACC___CCCCCC
14._ICS_43
CC_____AACC___CCCCCC
15._ICS_43
CC_____AACC___CCCCCC
16._ICS_43
CC_____AACC___CCCCCC
17._ICS_43
CC_____AACC___CCCCCC
18._ICS_43
CC_____AACC___CCCCCC
19._ICS_43
CC_____AACC___CCCCCC
20._ICS43
_______CC____CT_
21._RUQ_144
______CCGG__CCTT__
22._RUQ_144
TT_____CCGG___TTCTCT
23._ICS_43
TT_____CCGG___TTCTCT
24._RUQ_144
______CCGG__CC__CT
25._RUQ_144
AACCAGCCAA_CCCCGGATCCAAAG_
26._ICS_43_Fld#_164_Plt#_1
AACCAGCCAA_CCCCGGATCCAAAG_
 85868788899091       
_Input profile
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
6._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
7._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
8._GC-01-051-3-06
CC_CCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
9._GC-01-051-3-06
CCCCCCTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
10._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
11._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
12._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
13._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
14._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
15._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
16._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
17._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
18._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
19._ICS_43
__CCTTTT__X_XX_XX_XX_XX_XX_XX_X
20._ICS43
_______X_XX_XX_XX_XX_XX_XX_X
21._RUQ_144
_-CTGT___X_XX_XX_XX_XX_XX_XX_X
22._RUQ_144
__CTGTTT__X_XX_XX_XX_XX_XX_XX_X
23._ICS_43
__CTGTTT__X_XX_XX_XX_XX_XX_XX_X
24._RUQ_144
_CT_GT___X_XX_XX_XX_XX_XX_XX_X
25._RUQ_144
AA_AGAAAATTGGX_XX_XX_XX_XX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
AA_AGAAAATTGGX_XX_XX_XX_XX_XX_XX_X

Input profile: ICS_43 GC-01-051-3-06

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

2._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._ICS_43 GC-01-051-3-06

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._ICS_43 GC-01-051-3-06

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

11._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

13._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

14._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

15._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

16._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

17._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

18._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

19._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

20._ICS_43 ICS43

60.4 %
24 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_43 RUQ_144

48.7 %
39 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._ICS_43 RUQ_144

48.6 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._ICS_43

47.2 %
36 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

24._ICS_43 RUQ_144

42.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._ICS_43 RUQ_144

30.1 %
78 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

30.1 %
78 shared markers

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USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240