SNP Profiles of ICS-43   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCGGGGCCCCCCCCGGTTCCTTAA
1._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
2._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
3._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
4._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
5._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
6._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
7._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
8._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
9._GC-01-051-3-06
AACCCCGGGGCCCCCCCCGGTTCCTTAA
10._ICS_43
AACCCC____CCCCGG_CC__
11._ICS_43
AACCCC____CCCCGG_CC__
12._ICS_43
AACCCC____CCCCGG_CC__
13._ICS_43
AACCCC____CCCCGG_CC__
14._ICS_43
AACCCC____CCCCGG_CC__
15._ICS_43
AACCCC____CCCCGG_CC__
16._ICS_43
AACCCC____CCCCGG_CC__
17._ICS_43
AACCCC____CCCCGG_CC__
18._ICS_43
AACCCC____CCCCGG_CC__
19._ICS_43
AACCCC____CCCCGG_CC__
20._ICS43
__AA____CT___CC__
21._RUQ_144
AATTAA____CTCTAG_CC__
22._RUQ_144
_TTAA__CC_CT__CTCC__
23._ICS_43
AATTAA____CTCTAG_CC__
24._RUQ_144
__AA__CC________
25._RUQ_144
AA_AAAGAG_GGAG_GGAGGGAGAT
26._ICS_43_Fld#_164_Plt#_1
AA_AAAGAG_GGAG_GGAGGGAGAT
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAAGGAAAACCGGAATT
1._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
2._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
3._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
4._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
5._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
6._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
7._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
8._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
9._GC-01-051-3-06
CCGGGGCCGGTTAAGGAAAACCGGAATT
10._ICS_43
_GG__GG___AAAA_GGAA_
11._ICS_43
_GG__GG___AAAA_GGAA_
12._ICS_43
_GG__GG___AAAA_GGAA_
13._ICS_43
_GG__GG___AAAA_GGAA_
14._ICS_43
_GG__GG___AAAA_GGAA_
15._ICS_43
_GG__GG___AAAA_GGAA_
16._ICS_43
_GG__GG___AAAA_GGAA_
17._ICS_43
_GG__GG___AAAA_GGAA_
18._ICS_43
_GG__GG___AAAA_GGAA_
19._ICS_43
_GG__GG___AAAA_GGAA_
20._ICS43
___CG_CT_GG_AACCCC__
21._RUQ_144
____GG___TTAA_GGAA_
22._RUQ_144
___CG___GG_AACCGG__
23._ICS_43
_AA__GG___TTAA_GGAA_
24._RUQ_144
_AATT________GG__
25._RUQ_144
CCAACC_GGAGAGGGTTAAGGCCAAAA
26._ICS_43_Fld#_164_Plt#_1
CCAACC_GGAGAGGGTTAAGGCCAAAA
 2930313233343536373839404142
_Input profile
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
1._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
2._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
3._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
4._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
5._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
6._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
7._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
8._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
9._GC-01-051-3-06
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
10._ICS_43
__CC_GGTT__GG_____
11._ICS_43
__CC_GGTT__GG_____
12._ICS_43
__CC_GGTT__GG_____
13._ICS_43
__CC_GGTT__GG_____
14._ICS_43
__CC_GGTT__GG_____
15._ICS_43
__CC_GGTT__GG_____
16._ICS_43
__CC_GGTT__GG_____
17._ICS_43
__CC_GGTT__GG_____
18._ICS_43
__CC_GGTT__GG_____
19._ICS_43
__CC_GGTT__GG_____
20._ICS43
_AGCC____GT_CT___AT
21._RUQ_144
__CC_AAGT__AG_____
22._RUQ_144
_AGCCACAAGT__AGCT__GTAT
23._ICS_43
__CC_AAGT__AG_____
24._RUQ_144
__CC_AA____CT____
25._RUQ_144
CCAGCCACAAACCCACAGAGAAGGAC_
26._ICS_43_Fld#_164_Plt#_1
CCAGCCACAAACCCACAGAGAAGGAC_
 4344454647484950515253545556
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-01-051-3-06
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._ICS_43
TT_________TTCC__
11._ICS_43
TT_________TTCC__
12._ICS_43
TT_________TTCC__
13._ICS_43
TT_________TTCC__
14._ICS_43
TT_________TTCC__
15._ICS_43
TT_________TTCC__
16._ICS_43
TT_________TTCC__
17._ICS_43
TT_________TTCC__
18._ICS_43
TT_________TTCC__
19._ICS_43
TT_________TTCC__
20._ICS43
_AG________CT___
21._RUQ_144
CC_________CTCT__
22._RUQ_144
__AG______CTCT_GT-
23._ICS_43
CC_________CTCT__
24._RUQ_144
__AG__________GG
25._RUQ_144
GG_AGAGGG_GGGGACAGAGAGACGG
26._ICS_43_Fld#_164_Plt#_1
GG_AGAGGG_GGGGACAGAGAGACGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCAA
1._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
2._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
3._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
4._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
5._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
6._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
7._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
8._GC-01-051-3-06
CCCCCCAAGGGGAAGGGGGGAACCCCAA
9._GC-01-051-3-06
CCCCCCAAGGGGAA_GGGGAACCCCAA
10._ICS_43
CC_CCAAGG_AAGGGGGG___AA
11._ICS_43
CC_CCAAGG_AAGGGGGG___AA
12._ICS_43
CC_CCAAGG_AAGGGGGG___AA
13._ICS_43
CC_CCAAGG_AAGGGGGG___AA
14._ICS_43
CC_CCAAGG_AAGGGGGG___AA
15._ICS_43
CC_CCAAGG_AAGGGGGG___AA
16._ICS_43
CC_CCAAGG_AAGGGGGG___AA
17._ICS_43
CC_CCAAGG_AAGGGGGG___AA
18._ICS_43
CC_CCAAGG_AAGGGGGG___AA
19._ICS_43
CC_CCAAGG_AA_GGGG___AA
20._ICS43
CGCT_AC_AGACGG____CC_
21._RUQ_144
CG_CTACGG_ACGGTTGT___AG
22._RUQ_144
CGCTCTAC_AGACGGTTGTAG___
23._ICS_43
__CTACGG_ACGGTTGT___AG
24._RUQ_144
______ACGG_GTAG__AG
25._RUQ_144
CGAGAGACGGAGACGGAAACAG___
26._ICS_43_Fld#_164_Plt#_1
CGAGAGACGGAGACGGAAACAG___
 7172737475767778798081828384
_Input profile
CCAAAGCCCCGGAACCCCTTAACCCCCC
1._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
2._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
3._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
4._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
5._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
6._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
7._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
8._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
9._GC-01-051-3-06
CCAAAGCCCCGGAACCCCTTAACCCCCC
10._ICS_43
CC_____AACC___CCCCCC
11._ICS_43
CC_____AACC___CCCCCC
12._ICS_43
CC_____AACC___CCCCCC
13._ICS_43
CC_____AACC___CCCCCC
14._ICS_43
CC_____AACC___CCCCCC
15._ICS_43
CC_____AACC___CCCCCC
16._ICS_43
CC_____AACC___CCCCCC
17._ICS_43
CC_____AACC___CCCCCC
18._ICS_43
CC_____AACC___CCCCCC
19._ICS_43
CC_____AACC___CCCCCC
20._ICS43
_______CC____CT_
21._RUQ_144
TT_____CCGG___TTCTCT
22._RUQ_144
______CCGG__CCTT__
23._ICS_43
TT_____CCGG___TTCTCT
24._RUQ_144
______CCGG__CC__CT
25._RUQ_144
AACCAGCCAA_CCCCGGATCCAAAG_
26._ICS_43_Fld#_164_Plt#_1
AACCAGCCAA_CCCCGGATCCAAAG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-01-051-3-06
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-01-051-3-06
CCGG_CCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-01-051-3-06
CC_CCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
10._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
11._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
12._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
15._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
17._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
18._ICS_43
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
19._ICS_43
___CCTTTT__X_XX_XX_XX_XX_XX_X
20._ICS43
________X_XX_XX_XX_XX_XX_X
21._RUQ_144
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
22._RUQ_144
_AG-CTGT___X_XX_XX_XX_XX_XX_X
23._ICS_43
_AG_CTGTTT__X_XX_XX_XX_XX_XX_X
24._RUQ_144
__CT_GT___X_XX_XX_XX_XX_XX_X
25._RUQ_144
AA__AGAAAATTGGX_XX_XX_XX_XX_XX_X
26._ICS_43_Fld#_164_Plt#_1
AA__AGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: ICS_43 GC-01-051-3-06

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

2._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

3._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

7._ICS_43 GC-01-051-3-06

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._ICS_43 GC-01-051-3-06

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

9._ICS_43 GC-01-051-3-06

identical
90 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

11._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

12._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

13._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

14._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

15._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

16._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

17._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

18._ICS_43

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

19._ICS_43

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

20._ICS_43 ICS43

62 %
25 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

21._ICS_43 RUQ_144

50 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._ICS_43 RUQ_144

50 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

23._ICS_43

48.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

24._ICS_43 RUQ_144

45.2 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._ICS_43 RUQ_144

31.4 %
78 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

26._ICS_43 ICS_43_Fld#_164_Plt#_1

31.4 %
78 shared markers

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USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240