SNP Profiles of BE-2   View Data

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 1234567891011121314
_Input profile
AACCAAGGGGTTCCTTCCGGTTCTTTAA
1._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
2._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
3._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
4._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
5._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
6._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
7._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
8._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
9._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
10._GC-01-047-3-02
AACCAAGGGGTTCCTTCCGGTTCTTTAA
11._BE_2
AACCAA____TTCCGG_CT__
12._BE_2
AACCAA____TTCCGG_CT__
13._BE_2
AACCAA____TTCCGG_CT__
14._BE_2
AACCAA____TTCCGG_CT__
15._BE_2
AACCAA____TTCCGG_CT__
16._BE_2
AACCAA____TTCCGG_CT__
17._BE_2
AACCAA____TTCCGG_CT__
18._BE_2
AACCAA____TTCCGG_CT__
19._BE_2
AACCAA____TTCCGG_CT__
20._BE_2
AACCAA____TTCCGG_CT__
21._BE_2
AACCAA____TTCCGG_CT__
22._BE_2
AACCAA____TTCCGG_CT__
23._RUQ_1733
__AA__TT________
 1516171819202122232425262728
_Input profile
CCAAGGCCGGCTAATTGGATAACCGGAA
1._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
2._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
3._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
4._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
5._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
6._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
7._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
8._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
9._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
10._GC-01-047-3-02
CCAAGGCCGGCTAATTGGATAACCGGAA
11._BE_2
_AA__GG____ATAA_GGAA
12._BE_2
_AA__GG____ATAA_GGAA
13._BE_2
_AA__GG____ATAA_GGAA
14._BE_2
_AA__GG____ATAA_GGAA
15._BE_2
_AA__GG____ATAA_GGAA
16._BE_2
_AA__GG____ATAA_GGAA
17._BE_2
_AA__GG____ATAA_GGAA
18._BE_2
_AA__GG____ATAA_GGAA
19._BE_2
_AA__GG____ATAA_GGAA
20._BE_2
_AA__GG____ATAA_GGAA
21._BE_2
_AA__GG____ATAA_GGAA
22._BE_2
_AA__GG____ATAA_GGAA
23._RUQ_1733
_AATT_________GG_
 2930313233343536373839404142
_Input profile
TTGGAACGCCAGTTGGTTAGCCAACCGG
1._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
2._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
3._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
4._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
5._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
6._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
7._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
8._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
9._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
10._GC-01-047-3-02
TTGGAACGCCAGTTGGTTAGCCAACCGG
11._BE_2
___CG_AGTT__AG____
12._BE_2
___CG_AGTT__AG____
13._BE_2
___CG_AGTT__AG____
14._BE_2
___CG_AGTT__AG____
15._BE_2
___CG_AGTT__AG____
16._BE_2
___CG_AGTT__AG____
17._BE_2
___CG_AGTT__AG____
18._BE_2
___CG_AGTT__AG____
19._BE_2
___CG_AGTT__AG____
20._BE_2
___CG_AGTT__AG____
21._BE_2
___CG_AGTT__AG____
22._BE_2
___CG_AGTT__AG____
23._RUQ_1733
___CG_AG____CC___
 4344454647484950515253545556
_Input profile
TTCCAAGGAACCCCGGGGTTTTTTCTTT
1._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
2._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
3._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
4._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
5._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
6._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
7._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
8._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
9._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
10._GC-01-047-3-02
TTCCAAGGAACCCCGGGGTTTTTTCTTT
11._BE_2
_CC_________TTCT_
12._BE_2
_CC_________TTCT_
13._BE_2
_CC_________TTCT_
14._BE_2
_CC_________TTCT_
15._BE_2
_CC_________TTCT_
16._BE_2
_CC_________TTCT_
17._BE_2
_CC_________TTCT_
18._BE_2
_CC_________TTCT_
19._BE_2
_CC_________TTCT_
20._BE_2
_CC_________TTCT_
21._BE_2
_CC_________TTCT_
22._BE_2
_CC_________TTCT_
23._RUQ_1733
___GG__________
 5758596061626364656667686970
_Input profile
GGCCCTTTAAGGGGCCAATTGGGGTTCC
1._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
2._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
3._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
4._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
5._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
6._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
7._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
8._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
9._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
10._GC-01-047-3-02
GGCCCTTTAAGGGGCCAATTGGGGTTCC
11._BE_2
_CC_TTAAGG_CCAATTGG___
12._BE_2
_CC_TTAAGG_CCAATTGG___
13._BE_2
_CC_TTAAGG_CCAATTGG___
14._BE_2
_CC_TTAAGG_CCAATTGG___
15._BE_2
_CC_TTAAGG_CCAATTGG___
16._BE_2
_CC_TTAAGG_CCAATTGG___
17._BE_2
_CC_TTAAGG_CCAATTGG___
18._BE_2
_CC_TTAAGG_CCAATTGG___
19._BE_2
_CC_TTAAGG_CCAATTGG___
20._BE_2
_CC_TTAAGG_CCAATTGG___
21._BE_2
_CC_TTAAGG_CCAATTGG___
22._BE_2
_CC_TTAAGG_CCAATTGG___
23._RUQ_1733
GG______CCAA_GGGG__
 7172737475767778798081828384
_Input profile
AGTTAAAACCACAACCCGCCATAATTCT
1._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
2._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
3._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
4._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
5._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
6._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
7._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
8._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
9._GC-01-047-3-02
AGTTAAAACCACAACCCGCCATAATTCT
10._GC-01-047-3-02
AGTT_AACCACAACCCGCCATAATTCT
11._BE_2
AGTT_____CCCG___TTCT
12._BE_2
AGTT_____CCCG___TTCT
13._BE_2
AGTT_____CCCG___TTCT
14._BE_2
AGTT_____CCCG___TTCT
15._BE_2
AGTT_____CCCG___TTCT
16._BE_2
AGTT_____CCCG___TTCT
17._BE_2
AGTT_____CCCG___TTCT
18._BE_2
AGTT_____CCCG___TTCT
19._BE_2
AGTT_____CCCG___TTCT
20._BE_2
AGTT_____CCCG___TTCT
21._BE_2
AGTT_____CCCG___TTCT
22._BE_2
AATT_____CCCG___TTCT
23._RUQ_1733
AA______ACCG__AA__
 858687888990919293     
_Input profile
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
1._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
2._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
3._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
4._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
5._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
6._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
7._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
8._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
9._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
10._GC-01-047-3-02
CTCCAATTCTTTTTAAGGX_XX_XX_XX_XX_X
11._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
12._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
13._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
14._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
15._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
16._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
17._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
18._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
19._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
20._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
21._BE_2
CT_AA_CTTTTT__X_XX_XX_XX_XX_X
22._BE_2
CT_AA_TTTTTT__X_XX_XX_XX_XX_X
23._RUQ_1733
CT__TT_TT___X_XX_XX_XX_XX_X

Input profile: BE_2 GC-01-047-3-02

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

3._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

4._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

5._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

9._BE_2 GC-01-047-3-02

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018

10._BE_2 GC-01-047-3-02

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 4
 Dapeng Zhang, 2016

12._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 3
 Dapeng Zhang, 2016

14._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 6
 Dapeng Zhang, 2016

15._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 11
 Dapeng Zhang, 2016

16._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 13
 Dapeng Zhang, 2016

17._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 14
 Dapeng Zhang, 2016

18._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302
 Dapeng Zhang, 2016

19._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 12 > F
 Dapeng Zhang, 2016

20._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 16 > F
 Dapeng Zhang, 2016

21._BE_2

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1302 8 > FP
 Dapeng Zhang, 2016

22._BE_2

97.4 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._BE_2 RUQ_1733

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240