SNP Profiles of "BE 2"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
2. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
3. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
4. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
5. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
6. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
7. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
8. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
9. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
10. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
11. _GC-01-047-3-02
______GGGGAT___GG______CCTTCCTT___
12. _1302_2
______GG___AT___________________________
13. _1302_3
______GG___AT___________________________
14. _1302_4
______GG___AT___________________________
15. _1302_6
______GG___AT___________________________
16. _1302_11
______GG___AT___________________________
17. _1302_13
______GG___AT___________________________
18. _1302_14
______GG___AT___________________________
19. _1302
______GG___AT___________________________
20. _1302_12_>_F
______GG___AT___________________________
21. _1302_16_>_F
______GG___AT___________________________
22. _1302_8_>_FP
______GG___AT___________________________
23. _Cabiria
______GG___AT___________________________
24. _RUQ_1733
CCCC_________CT___CCGG____________GT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
2. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
3. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
4. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
5. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
6. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
7. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
8. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
9. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
10. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
11. _GC-01-047-3-02
___CCTTTTAAGG______AA___CCAAGGCT
12. _1302_2
___CCTTTT____________AA___CCAA___CT
13. _1302_3
___CCTTTT____________AA___CCAA___CT
14. _1302_4
___CCTTTT____________AA___CCAA___CT
15. _1302_6
___CCTTTT____________AA___CCAA___CT
16. _1302_11
___CCTTTT____________AA___CCAA___CT
17. _1302_13
___CCTTTT____________AA___CCAA___CT
18. _1302_14
___CCTTTT____________AA___CCAA___CT
19. _1302
___CCTTTT____________AA___CCAA___CT
20. _1302_12_>_F
___CCTTTT____________AA___CCAA___CT
21. _1302_16_>_F
___CCTTTT____________AA___CCAA___CT
22. _1302_8_>_FP
___CCTTTT____________AA___CCAA___CT
23. _Cabiria
___CCTTTT____________AA___CCAA___TT
24. _RUQ_1733
TTCC____________CCGG___TT___AA______
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
2. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
3. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
4. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
5. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
6. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
7. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
8. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
9. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
10. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
11. _GC-01-047-3-02
______AAGG___GGAACTGG___GGATCCAA
12. _1302_2
__________________AA_________GG______AA
13. _1302_3
__________________AA_________GG______AA
14. _1302_4
__________________AA_________GG______AA
15. _1302_6
__________________AA_________GG______AA
16. _1302_11
__________________AA_________GG______AA
17. _1302_13
__________________AA_________GG______AA
18. _1302_14
__________________AA_________GG______AA
19. _1302
__________________AA_________GG______AA
20. _1302_12_>_F
__________________AA_________GG______AA
21. _1302_16_>_F
__________________AA_________GG______AA
22. _1302_8_>_FP
__________________AA_________GG______AA
23. _Cabiria
__________________AA_________GG______AA
24. _RUQ_1733
TTAA___GGAA____________CC____________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
2. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
3. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
4. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
5. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
6. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
7. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
8. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
9. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
10. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
11. _GC-01-047-3-02
___CC___CCCC___GGTTAACG___AACCAA
12. _1302_2
_________CCCC______TT___CG___AA______
13. _1302_3
_________CCCC______TT___CG___AA______
14. _1302_4
_________CCCC______TT___CG___AA______
15. _1302_6
_________CCCC______TT___CG___AA______
16. _1302_11
_________CCCC______TT___CG___AA______
17. _1302_13
_________CCCC______TT___CG___AA______
18. _1302_14
_________CCCC______TT___CG___AA______
19. _1302
_________CCCC______TT___CG___AA______
20. _1302_12_>_F
_________CCCC______TT___CG___AA______
21. _1302_16_>_F
_________CCCC______TT___CG___AA______
22. _1302_8_>_FP
_________CCCC______TT___CG___AA______
23. _Cabiria
_________CCCC______TT___CG___AA______
24. _RUQ_1733
CC___TTAC___GG_________CGTTAACC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
2. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
3. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
4. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
5. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
6. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
7. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
8. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
9. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
10. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
11. _GC-01-047-3-02
TT_________AGAA___AATTTTGGGG___TT
12. _1302_2
TT_________AG_______________GG_________
13. _1302_3
TT_________AG_______________GG_________
14. _1302_4
TT_________AG_______________GG_________
15. _1302_6
TT_________AG_______________GG_________
16. _1302_11
TT_________AG_______________GG_________
17. _1302_13
TT_________AG_______________GG_________
18. _1302_14
TT_________AG_______________GG_________
19. _1302
TT_________AG_______________GG_________
20. _1302_12_>_F
TT_________AG_______________GG_________
21. _1302_16_>_F
TT_________AG_______________GG_________
22. _1302_8_>_FP
TT_________AG_______________GG_________
23. _Cabiria
TT_________AA_______________GG_________
24. _RUQ_1733
___TTGGCCAA___GG______TTGGGGCT___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
2. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
3. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
4. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
5. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
6. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
7. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
8. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
9. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
10. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
11. _GC-01-047-3-02
TTTT___AA___GGGGCCCTCCGGTTGGCC
12. _1302_2
__________________GG___CT______TTGG___
13. _1302_3
__________________GG___CT______TTGG___
14. _1302_4
__________________GG___CT______TTGG___
15. _1302_6
__________________GG___CT______TTGG___
16. _1302_11
__________________GG___CT______TTGG___
17. _1302_13
__________________GG___CT______TTGG___
18. _1302_14
__________________GG___CT______TTGG___
19. _1302
__________________GG___CT______TTGG___
20. _1302_12_>_F
__________________GG___CT______TTGG___
21. _1302_16_>_F
__________________GG___CT______TTGG___
22. _1302_8_>_FP
__________________GG___CT______TTGG___
23. _Cabiria
__________________GG___CT______TTGG___
24. _RUQ_1733
______TTAAAATTGG_________GG_________
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
2. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
3. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
4. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
5. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
6. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
7. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
8. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
9. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
10. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
11. _GC-01-047-3-02
___AACTAGTT______TTCC___TTAAGGAA
12. _1302_2
___AACTAG__________________TTAA___AA
13. _1302_3
___AACTAG__________________TTAA___AA
14. _1302_4
___AACTAG__________________TTAA___AA
15. _1302_6
___AACTAG__________________TTAA___AA
16. _1302_11
___AACTAG__________________TTAA___AA
17. _1302_13
___AACTAG__________________TTAA___AA
18. _1302_14
___AACTAG__________________TTAA___AA
19. _1302
___AACTAG__________________TTAA___AA
20. _1302_12_>_F
___AACTAG__________________TTAA___AA
21. _1302_16_>_F
___AACTAG__________________TTAA___AA
22. _1302_8_>_FP
___AACTAG__________________TTAA___AA
23. _Cabiria
___AACTAG__________________TTAA___AA
24. _RUQ_1733
CC______AGTTCCAA______CC___AA______
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
2. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
3. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
4. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
5. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
6. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
7. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
8. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
9. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
10. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
11. _GC-01-047-3-02
CCAA___TTCTTTCCCCGG_________CCTT
12. _1302_2
____________CT______CC_______________TT
13. _1302_3
____________CT______CC_______________TT
14. _1302_4
____________CT______CC_______________TT
15. _1302_6
____________CT______CC_______________TT
16. _1302_11
____________CT______CC_______________TT
17. _1302_13
____________CT______CC_______________TT
18. _1302_14
____________CT______CC_______________TT
19. _1302
____________CT______CC_______________TT
20. _1302_12_>_F
____________CT______CC_______________TT
21. _1302_16_>_F
____________CT______CC_______________TT
22. _1302_8_>_FP
____________CT______CC_______________TT
23. _Cabiria
____________CT______CC_______________TT
24. _RUQ_1733
______TT___CT____________TTAATT___TT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
2. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
3. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
4. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
5. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
6. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
7. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
8. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
9. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
10. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
11. _GC-01-047-3-02
CC______TT___GG______TTCTTTCGAGCT
12. _1302_2
CC_____________________TT___TTCGAGCT
13. _1302_3
CC_____________________TT___TTCGAGCT
14. _1302_4
CC_____________________TT___TTCGAGCT
15. _1302_6
CC_____________________TT___TTCGAGCT
16. _1302_11
CC_____________________TT___TTCGAGCT
17. _1302_13
CC_____________________TT___TTCGAGCT
18. _1302_14
CC_____________________TT___TTCGAGCT
19. _1302
CC_____________________TT___TTCGAGCT
20. _1302_12_>_F
CC_____________________TT___TTCGAGCT
21. _1302_16_>_F
CC_____________________TT___TTCGAGCT
22. _1302_8_>_FP
CC_____________________TT___TTCGAGCT
23. _Cabiria
CC_________CC_________TT___TTCGAGCT
24. _RUQ_1733
___GGAT_________AAGG_________CG______
 127 128 129 130 131 132 133        
1. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
2. _GC-01-047-3-02
______CCAA___AAACX_XX_XX_XX_XX_XX_XX_X
3. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
4. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
5. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
6. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
7. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
8. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
9. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
10. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
11. _GC-01-047-3-02
______CCAAAAAAACX_XX_XX_XX_XX_XX_XX_X
12. _1302_2
_____________________X_XX_XX_XX_XX_XX_XX_X
13. _1302_3
_____________________X_XX_XX_XX_XX_XX_XX_X
14. _1302_4
_____________________X_XX_XX_XX_XX_XX_XX_X
15. _1302_6
_____________________X_XX_XX_XX_XX_XX_XX_X
16. _1302_11
_____________________X_XX_XX_XX_XX_XX_XX_X
17. _1302_13
_____________________X_XX_XX_XX_XX_XX_XX_X
18. _1302_14
_____________________X_XX_XX_XX_XX_XX_XX_X
19. _1302
_____________________X_XX_XX_XX_XX_XX_XX_X
20. _1302_12_>_F
_____________________X_XX_XX_XX_XX_XX_XX_X
21. _1302_16_>_F
_____________________X_XX_XX_XX_XX_XX_XX_X
22. _1302_8_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
23. _Cabiria
_____________________X_XX_XX_XX_XX_XX_XX_X
24. _RUQ_1733
TTAT_______________X_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._BE_2 GC-01-047-3-02
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._BE_2 GC-01-047-3-02
Location: Tree: 2
Notes: 2
 Mars, 2018
3._BE_2 GC-01-047-3-02
Location: Tree: 3
Notes: 3
 Mars, 2018
4._BE_2 GC-01-047-3-02
Location: Tree: 4
Notes: 4
 Mars, 2018
5._BE_2 GC-01-047-3-02
Location: Tree: 6
Notes: 6
 Mars, 2018
6._BE_2 GC-01-047-3-02
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018
7._BE_2 GC-01-047-3-02
Location: Tree: 11
Notes: 11
 Mars, 2018
8._BE_2 GC-01-047-3-02
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018
9._BE_2 GC-01-047-3-02
Location: Tree: 13
Notes: 13
 Mars, 2018
10._BE_2 GC-01-047-3-02
Location: Tree: 14
Notes: 14
 Mars, 2018
11._BE_2 GC-01-047-3-02
Location: Tree: 16
Notes: 16 > FP4
 Mars, 2018
12._BE_2
Location: 1302 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
13._BE_2
Location: 1302 3
 Dapeng Zhang, 2016
14._BE_2
Location: 1302 4
 Dapeng Zhang, 2016
15._BE_2
Location: 1302 6
 Dapeng Zhang, 2016
16._BE_2
Location: 1302 11
 Dapeng Zhang, 2016
17._BE_2
Location: 1302 13
 Dapeng Zhang, 2016
18._BE_2
Location: 1302 14
 Dapeng Zhang, 2016
19._BE_2
Location: 1302
 Dapeng Zhang, 2016
20._BE_2
Location: 1302 12 > F
 Dapeng Zhang, 2016
21._BE_2
Location: 1302 16 > F
 Dapeng Zhang, 2016
22._BE_2
Location: 1302 8 > FP
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

23._BE_2
Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

24._BE_2 RUQ 1733
 Lambert Motilal, 2023

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP606 57TcSNP619 58TcSNP640 59TcSNP642 60TcSNP644
61TcSNP645 62TcSNP653 63TcSNP660 64TcSNP689 65TcSNP701
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP872 78TcSNP878 79TcSNP891 80TcSNP894
81TcSNP899 82TcSNP917 83TcSNP929 84TcSNP944 85TcSNP945
86TcSNP953 87TcSNP994 88TcSNP998 89TcSNP999 90TcSNP1010
91TcSNP1019 92TcSNP1034 93TcSNP1041 94TcSNP1053 95TcSNP1060
96TcSNP1062 97TcSNP1063 98TcSNP1075 99TcSNP1096 100TcSNP1111
101TcSNP1112 102TcSNP1126 103TcSNP1144 104TcSNP1149 105TcSNP1156
106TcSNP1165 107TcSNP1175 108TcSNP1205 109TcSNP1230 110TcSNP1237
111TcSNP1242 112TcSNP1253 113TcSNP1270 114TcSNP1275 115TcSNP1293
116TcSNP1309 117TcSNP1350 118TcSNP1383 119TcSNP1401 120TcSNP1404
121TcSNP1414 122TcSNP1439 123TcSNP1442 124TcSNP1458 125TcSNP1484
126TcSNP1520 127TcSNP1524 128TcSNP1527 129Tcm001s00947643 130Tcm002s20575712
131Tcm003s01336581 132Tcm003s07402719 133Tcm006s26664133