SNP Profiles of SCA-6   View Data

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 1234567891011121314
_Input profile
ATCCCCCCAGAATTCTTTAGTTTTTTAT
1._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
2._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
3._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
4._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
5._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
6._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
7._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
8._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
9._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
10._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
11._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
12._SCA_6
ATCCCCCC___CTTTAG_TT__
13._SCA_6
ATCCCCCC___CTTTAG_TT__
14._SCA_6
ATCCCCCC___CTTTAG_TT__
15._SCA_6
ATCCCCCC___CTTTAG_TT__
16._SCA_6
ATCCCCCC___CTTTAG_TT__
17._SCA_6
ATCCCCCC___CTTTAG_TT__
18._SCA_6
ATCCCCCC___CTTTAG_TT__
19._SCA_6
ATCCCCCC___CTTTAG_TT__
20._SCA_6
ATCCCCCC___CTTTAG_TT__
21._SCA_6
ATCCCCCC___CTTTAG_TT__
22._SCA_6
ATCCCCCC___CTTTAG_TT__
23._SCA_6
ATCCCCCC___CTTTAG_TT__
24._SCA_6
ATCCCCCC___CTTTAG_TT__
25._SCA_6
ATCCCCCC___CTTTAG_TT__
26._SCA_6
ATCCCCCC___CTTTAG_TT__
27._SCA_6
ATCCCCCC___CTTTAG_TT__
28._SCA_6
ATCCCCCC___CTTTAG_TT__
29._GC-01-026-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
30._RUQ_234
ATCCCCCC___CTTTAG_TT__
31._RUQ_234
__CCCC___CT__TTTT__
32._SCA_6
ATCCCCCC___CTTTAG_TT__
33._SCA_6
ATCCCCCC___CTTTAG_TT__
34._SCA_6
ATCCCCCC___CTTTAG_TT__
35._SCA_6
ATCCCCCC___CTTTAG_TT__
36._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
37._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
38._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
39._GC-01-26-2-03
ATCCCCCCAGAATTCTTTAGTTTTTTAT
40._RUQ_234B
___CC__________
41._SCA_6
ATCCCCCC___CTTTAG_TT__
42._SCA_6
ATCCCCCC___CCTTAG_TT__
43._SCA6
___CC___CT___TT__
44._RUQ_234
ATCC_CCAGAAAAAG_AGAAAAAAAT
45._MITC-000343
ATCC_CCAGAAAAAG_AGAAAAAAAT
46._MITC-000344
ATCC_CCAGAAAAAG_AGAAAAAAAT
47._MITC-000345
ATCC_CCAGAAAAAG_AGAAAAAAAT
48._MITC-000347
ATCC_CCAGAAAAAG_AGAAAAAAAT
49._MITC-000348
ATCC_CCAGAAAAAG_AGAAAAAAAT
50._MITC-000349
ATCC_CCAGAAAAAG_AGAAAAAAAT
51._MITC-000376
ATCC_CCAGAAAAAG_AGAAAAAAAT
52._MITC-000452
ATCC_CCAGAAAAAG_AGAAAAAAAT
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATAC_ACAGAGAGGG_AGAAAGAGAT
54._SCA_6_Fld#_16_Plt#_1
ATAC_ACAGAGAGGG_AGAAAGAGAT
 1516171819202122232425262728
_Input profile
AAAAGGCCCGCCCCAACTGGAAAAGGCC
1._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
2._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
3._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
4._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
5._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
6._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
7._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
8._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
9._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
10._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
11._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGG_AAGGCC
12._SCA_6
__GG__CC____AAAA_CC
13._SCA_6
__GG__CC____AAAA_CC
14._SCA_6
__GG__CC____AAAA_CC
15._SCA_6
__GG__CC____AAAA_CC
16._SCA_6
__GG__CC____AAAA_CC
17._SCA_6
__GG__CC____AAAA_CC
18._SCA_6
__GG__CC____AAAA_CC
19._SCA_6
__GG__CC____AAAA_CC
20._SCA_6
__GG__CC____AAAA_CC
21._SCA_6
__GG__CC____AAAA_CC
22._SCA_6
__GG__CC____AAAA_CC
23._SCA_6
__GG__CC____AAAA_CC
24._SCA_6
__GG__CC____AAAA_CC
25._SCA_6
__GG__CC____AAAA_CC
26._SCA_6
__GG__CC____AAAA_CC
27._SCA_6
__GG__CC____AAAA_CC
28._SCA_6
__GG__CC_____AA_CC
29._GC-01-026-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
30._RUQ_234
__GG__CC____AAAA_CC
31._RUQ_234
____CG____GG_AAGGCC
32._SCA_6
__GG__CC____AAAA_CC
33._SCA_6
__GG__CC____AAAA_CC
34._SCA_6
__GG__CC____AAAA_CC
35._SCA_6
__GG__CC____AAAA_CC
36._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
37._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
38._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
39._GC-01-26-2-03
AAAAGGCCCGCCCCAACTGGAAAAGGCC
40._RUQ_234B
__GGCC_________CC
41._SCA_6
__GG__CC____AAAA_CC
42._SCA_6
__GG__CC____AAAA_CC
43._SCA6
_AA__CG_CC__GG_AAGGGG
44._RUQ_234
AAAAGGGG_CCGGAAAGGGAAAACCGG
45._MITC-000343
AAAAGGGG_CCGGAAAGGGAAAACCGG
46._MITC-000344
AAAAGGGG_CCGGAAAGGGAAAACCGG
47._MITC-000345
AAAAGGGG_CCGGAAAGGGAAAACCGG
48._MITC-000347
AAAAGGGG_CCGGAAAGGGAAAACCGG
49._MITC-000348
AAAAGGGG_CCGGAAAGGGAAAACCGG
50._MITC-000349
AAAAGGGG_CCGGAAAGGGAAAACCGG
51._MITC-000376
AAAAGGGG_CCGGAAAGGGAAAACCGG
52._MITC-000452
AAAAGGGG_CCGGAAAGGGAAAACCGG
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ACAGAGCG_CCAGAGAAGGATAACGCG
54._SCA_6_Fld#_16_Plt#_1
ACAGAGCG_CCAGAGAAGGATAACGCG
 2930313233343536373839404142
_Input profile
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
1._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
2._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
3._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
4._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
5._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
6._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
7._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
8._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
9._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
10._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
11._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
12._SCA_6
TT___CG_AAGG__AG___
13._SCA_6
TT___CG_AAGG__AG___
14._SCA_6
TT___CG_AAGG__AG___
15._SCA_6
TT___CG_AAGG__AG___
16._SCA_6
TT___CG_AAGG__AG___
17._SCA_6
TT___CG_AAGG__AG___
18._SCA_6
TT___CG_AAGG__AG___
19._SCA_6
TT___CG_AAGG__AG___
20._SCA_6
TT___CG_AAGG__AG___
21._SCA_6
TT___CG_AAGG__AG___
22._SCA_6
TT___CG_AAGG__AG___
23._SCA_6
TT___CG_AAGG__AG___
24._SCA_6
TT___CG_AAGG__AG___
25._SCA_6
TT___CG_AAGG__AG___
26._SCA_6
TT___CG_AAGG__AG___
27._SCA_6
TT___CG_AAGG__AG___
28._SCA_6
TT___CG_AAGG__AG___
29._GC-01-026-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
30._RUQ_234
TT___CG_AAGG__AG___
31._RUQ_234
___GGCGCCAAGG__AGCC__
32._SCA_6
TT___CG_AAGG__AG___
33._SCA_6
TT___CG_AAGG__AG___
34._SCA_6
TT___CG_AAGG__AG___
35._SCA_6
TT___CG_AAGG__AG___
36._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
37._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
38._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
39._GC-01-26-2-03
TTTTTTGGCGCCAAGGTTTTAGCCGGCG
40._RUQ_234B
____CG_AA____CC__
41._SCA_6
TT___CG_AAGG__AG___
42._SCA_6
TT___CG_AAGG__AG___
43._SCA6
___GGCG____TT_CC__
44._RUQ_234
TTAAAAGGCGCCAACCAAAAAGGGGGCG
45._MITC-000343
TTAAAAGGCGCCAACCAAAAAGGGGGCG
46._MITC-000344
TTAAAAGGCGCCAACCAAAAAGGGGGCG
47._MITC-000345
TTAAAAGGCGCCAACCAAAAAGGGGGCG
48._MITC-000347
TTAAAAGGCGCCAACCAAAAAGGGGGCG
49._MITC-000348
TTAAAAGGCGCCAACCAAAAAGGGGGCG
50._MITC-000349
TTAAAAGGCGCCAACCAAAAAGGGGGCG
51._MITC-000376
TTAAAAGGCGCCAACCAAAAAGGGGGCG
52._MITC-000452
TTAAAAGGCGCCAACCAAAAAGGGGGCG
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATAAACAGCGCCAGACACAAAGAGAGGG
54._SCA_6_Fld#_16_Plt#_1
ATAAACAGCGCCAGACACAAAGAGAGGG
 4344454647484950515253545556
_Input profile
GGTTCTAGAAAACCAAAAAAGGTTCCTT
1._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
2._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
3._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
4._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
5._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
6._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
7._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
8._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
9._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
10._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
11._GC-01-026-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
12._SCA_6
__CT________TTCC_
13._SCA_6
__CT________TTCC_
14._SCA_6
__CT________TTCC_
15._SCA_6
__CT________TTCC_
16._SCA_6
__CT________TTCC_
17._SCA_6
__CT________TTCC_
18._SCA_6
__CT________TTCC_
19._SCA_6
__CT________TTCC_
20._SCA_6
__CT________TTCC_
21._SCA_6
__CT________TTCC_
22._SCA_6
__CT________TTCC_
23._SCA_6
__CT________TTCC_
24._SCA_6
__CT________TTCC_
25._SCA_6
__CT________TTCC_
26._SCA_6
__CT________TTCC_
27._SCA_6
__CT________TTCC_
28._SCA_6
__CT________TTCC_
29._GC-01-026-2-03
GGTTCTAGGGAACCAAAAAAGGTTCCTT
30._RUQ_234
__CT________TTCC_
31._RUQ_234
GGTT__AA______TT_TT
32._SCA_6
__CT________TTCC_
33._SCA_6
__CT________TTCC_
34._SCA_6
__CT________TTCC_
35._SCA_6
__CT________TTCC_
36._GC-01-26-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
37._GC-01-26-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
38._GC-01-26-2-03
GGTTCTAG_AACCAAAAAAGGTTCCTT
39._GC-01-26-2-03
GGTTCTAGAAAACCAAAAAAGGTTCCTT
40._RUQ_234B
____AA_________
41._SCA_6
__CT________TTCC_
42._SCA_6
__TT________TTCC_
43._SCA6
_TT_AG_______TT__
44._RUQ_234
CC_AG_AAAAGG_AAAACCAAGGAA
45._MITC-000343
CC_AG_AAAAGG_AAAACCAAGGAA
46._MITC-000344
CC_AG_AAAAGG_AAAACCAAGGAA
47._MITC-000345
CC_AG_AAAAGG_AAAACCAAGGAA
48._MITC-000347
CC_AG_AAAAGG_AAAACCAAGGAA
49._MITC-000348
CC_AG_AAAAGG_AAAACCAAGGAA
50._MITC-000349
CC_AG_AAAAGG_AAAACCAAGGAA
51._MITC-000376
CC_AG_AAAAGG_AAAACCAAGGAA
52._MITC-000452
CC_AG_AAAAGG_AAAACCAAGGAA
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
CC_GG_AGAAGG_AGAGACAGAGAA
54._SCA_6_Fld#_16_Plt#_1
CC_GG_AGAAGG_AGAGACAGAGAA
 5758596061626364656667686970
_Input profile
GGCCCCCTCCCCGGACAAGGGGAACTCG
1._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
2._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
3._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
4._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
5._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
6._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
7._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
8._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
9._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
10._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAA_CG
11._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
12._SCA_6
_CC_CTCCCC_ACAAGGGG___
13._SCA_6
_CC_CTCCCC_ACAAGGGG___
14._SCA_6
_CC_CTCCCC_ACAAGGGG___
15._SCA_6
_CC_CTCCCC_ACAAGGGG___
16._SCA_6
_CC_CTCCCC_ACAAGGGG___
17._SCA_6
_CC_CTCCCC_ACAAGGGG___
18._SCA_6
_CC_CTCCCC_ACAAGGGG___
19._SCA_6
_CC_CTCCCC_ACAAGGGG___
20._SCA_6
_CC_CTCCCC_ACAAGGGG___
21._SCA_6
_CC_CTCCCC_ACAAGGGG___
22._SCA_6
_CC_CTCCCC_ACAAGGGG___
23._SCA_6
_CC_CTCCCC_ACAAGGGG___
24._SCA_6
_CC_CTCCCC_ACAAGGGG___
25._SCA_6
_CC_CTCCCC_ACAAGGGG___
26._SCA_6
_CC_CTCCCC_ACAAGGGG___
27._SCA_6
_CC_CTCCCC_ACAAGGGG___
28._SCA_6
_CC_CTCCCC_ACAAGGGG___
29._GC-01-026-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
30._RUQ_234
_CC_CTCCCC_ACAAGGGG___
31._RUQ_234
-CCCCCTCC_GGCCAAGGGGAA__
32._SCA_6
_CC_CTCCCC_ACAAGGGG___
33._SCA_6
_CC_CTCCCC_ACAAGGGG___
34._SCA_6
_CC_CTCCCC_ACAAGGGG___
35._SCA_6
_CC_CTCCCC_ACAAGGGG___
36._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
37._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
38._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
39._GC-01-26-2-03
GGCCCCCTCCCCGGACAAGGGGAACTCG
40._RUQ_234B
GG______ACAA_GGAA__
41._SCA_6
_CC_CTCCCC_ACAAGGGG___
42._SCA_6
_CC_TTCCCC_ACAAGGGG___
43._SCA6
_GGCC_CC_GGCCAA____CG
44._RUQ_234
GGGGGGAGCCCCGGACAACCCCAA__
45._MITC-000343
GGGGGGAGCCCCGGACAACCCCAA__
46._MITC-000344
GGGGGGAGCCCCGGACAACCCCAA__
47._MITC-000345
GGGGGGAGCCCCGGACAACCCCAA__
48._MITC-000347
GGGGGGAGCCCCGGACAACCCCAA__
49._MITC-000348
GGGGGGAGCCCCGGACAACCCCAA__
50._MITC-000349
GGGGGGAGCCCCGGACAACCCCAA__
51._MITC-000376
GGGGGGAGCCCCGGACAACCCCAA__
52._MITC-000452
GGGGGGAGCCCCGGACAACCCCAA__
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AGGGAGGGACCGGGAAAAACCCAG__
54._SCA_6_Fld#_16_Plt#_1
AGGGAGGGACCGGGAAAAACCCAG__
 7172737475767778798081828384
_Input profile
AACCCCGGCCCCAAAACCCCAACCTTCC
1._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
2._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
3._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
4._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
5._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
6._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
7._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
8._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
9._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
10._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
11._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
12._SCA_6
AACC_____AACC___TTCC
13._SCA_6
AACC_____AACC___TTCC
14._SCA_6
AACC_____AACC___TTCC
15._SCA_6
AACC_____AACC___TTCC
16._SCA_6
AACC_____AACC___TTCC
17._SCA_6
AACC_____AACC___TTCC
18._SCA_6
AACC_____AACC___TTCC
19._SCA_6
AACC_____AACC___TTCC
20._SCA_6
AACC_____AACC___TTCC
21._SCA_6
AACC_____AACC___TTCC
22._SCA_6
AACC_____AACC___TTCC
23._SCA_6
AACC_____AACC___TTCC
24._SCA_6
AACC_____AACC___TTCC
25._SCA_6
AACC_____AACC___TTCC
26._SCA_6
AACC_____AACC___TTCC
27._SCA_6
AACC_____AACC___TTCC
28._SCA_6
AACC_____AACC___TTCC
29._GC-01-026-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
30._RUQ_234
AGCC_____AACC___TTCC
31._RUQ_234
_______AACC__CCTT_
32._SCA_6
AGCC_____AACC___TTCC
33._SCA_6
AGCC_____AACC___TTCC
34._SCA_6
AGCC_____AACC___TTCC
35._SCA_6
AGCC_____AACC___TTCC
36._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
37._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
38._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
39._GC-01-26-2-03
AACCCCGGCCCCAAAACCCCAACCTTCC
40._RUQ_234B
AG______AACC__CC__
41._SCA_6
AGCC_____AACC___TTCC
42._SCA_6
AGCT_____AACC___TTCC
43._SCA6
________GG____CC
44._RUQ_234
_GGCCGGCCCC_AAGGGGAACCAAGG
45._MITC-000343
_GGCCGGCCCC_AAGGGGAACCAAGG
46._MITC-000344
_GGCCGGCCCC_AAGGGGAACCAAGG
47._MITC-000345
_GGCCGGCCCC_AAGGGGAACCAAGG
48._MITC-000347
_GGCCGGCCCC_AAGGGGAACCAAGG
49._MITC-000348
_GGCCGGCCCC_AAGGGGAACCAAGG
50._MITC-000349
_GGCCGGCCCC_AAGGGGAACCAAGG
51._MITC-000376
_GGCCGGCCCC_AAGGGGAACCAAGG
52._MITC-000452
_GGCCGGCCCC_AAGGGGAACCAAGG
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
_AGACAGCCAC_ACCGGGATACAAAG
54._SCA_6_Fld#_16_Plt#_1
_AGACAGCCAC_ACCGGGATACAAAG
 858687888990919293     
_Input profile
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
1._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
2._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
3._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
4._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
5._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
6._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
7._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
8._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
9._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
10._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
11._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
12._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
13._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
14._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
15._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
16._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
17._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
18._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
19._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
20._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
21._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
22._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
23._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
24._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
25._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
26._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
27._SCA_6
CC_GG_CTGG___X_XX_XX_XX_XX_X
28._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
29._GC-01-026-2-03
CCCCGGCCCTGGCCTTAGX_XX_XX_XX_XX_X
30._RUQ_234
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
31._RUQ_234
__GGCCCTGG___X_XX_XX_XX_XX_X
32._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
33._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
34._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
35._SCA_6
CC_GG_CTGGCC__X_XX_XX_XX_XX_X
36._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
37._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
38._GC-01-26-2-03
CCCCGGCCCTGGCCCCCCX_XX_XX_XX_XX_X
39._GC-01-26-2-03
CCCCGGCCCTGG_CCCCX_XX_XX_XX_XX_X
40._RUQ_234B
CC__CC_GG___X_XX_XX_XX_XX_X
41._SCA_6
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
42._SCA_6
CC_GG_TTGGCC__X_XX_XX_XX_XX_X
43._SCA6
_________X_XX_XX_XX_XX_X
44._RUQ_234
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
45._MITC-000343
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
46._MITC-000344
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
47._MITC-000345
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
48._MITC-000347
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
49._MITC-000348
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
50._MITC-000349
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
51._MITC-000376
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
52._MITC-000452
_GG__AGCCGGAAAGX_XX_XX_XX_XX_X
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
_GG__GGACAGATAGX_XX_XX_XX_XX_X
54._SCA_6_Fld#_16_Plt#_1
_GG__GGACAGATAGX_XX_XX_XX_XX_X

Input profile: SCA_6 GC-01-026-2-03

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

10._SCA_6 GC-01-026-2-03

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

11._SCA_6 GC-01-026-2-03

identical
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

12._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

13._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

14._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

15._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

16._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

17._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

18._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

19._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

20._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

21._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

22._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

23._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

24._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

25._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

26._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

27._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

28._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

29._SCA_6 GC-01-026-2-03

98.9 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._SCA_6 RUQ_234

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._SCA_6 RUQ_234

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

33._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

34._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

35._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

36._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

37._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

38._SCA_6 GC-01-26-2-03

97.8 %
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

39._SCA_6 GC-01-26-2-03

97.8 %
92 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

40._SCA_6 RUQ_234B

97.5 %
20 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

41._SCA_6

97.5 %
40 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

42._SCA_6

92.5 %
40 shared markers

 View  View all  Clone  Any
Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

43._SCA_6 SCA6

86.5 %
26 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

44._SCA_6 RUQ_234

52.5 %
80 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

45._SCA_6 MITC-000343

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

46._SCA_6 MITC-000344

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

47._SCA_6 MITC-000345

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

48._SCA_6 MITC-000347

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

49._SCA_6 MITC-000348

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

50._SCA_6 MITC-000349

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

51._SCA_6 MITC-000376

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

52._SCA_6 MITC-000452

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

53._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

54._SCA_6 SCA_6_Fld#_16_Plt#_1

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240