SNP Profiles of SCA-6   View Data

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 1234567891011121314
_Input profile
ATCCCCCCAGAATTTTCTTTAGTTTTTT
1._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
2._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
3._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
4._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
5._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
6._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
7._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
8._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
9._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
10._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
11._GC-01-026-2-03
ATCCCCCCAGAA_TTCTTTAGTTTTTT
12._SCA_6
ATCCCCCC____CTTTAG_TT_
13._SCA_6
ATCCCCCC____CTTTAG_TT_
14._SCA_6
ATCCCCCC____CTTTAG_TT_
15._SCA_6
ATCCCCCC____CTTTAG_TT_
16._SCA_6
ATCCCCCC____CTTTAG_TT_
17._SCA_6
ATCCCCCC____CTTTAG_TT_
18._SCA_6
ATCCCCCC____CTTTAG_TT_
19._SCA_6
ATCCCCCC____CTTTAG_TT_
20._SCA_6
ATCCCCCC____CTTTAG_TT_
21._SCA_6
ATCCCCCC____CTTTAG_TT_
22._SCA_6
ATCCCCCC____CTTTAG_TT_
23._SCA_6
ATCCCCCC____CTTTAG_TT_
24._SCA_6
ATCCCCCC____CTTTAG_TT_
25._SCA_6
ATCCCCCC____CTTTAG_TT_
26._SCA_6
ATCCCCCC____CTTTAG_TT_
27._SCA_6
ATCCCCCC____CTTTAG_TT_
28._SCA_6
ATCCCCCC____CTTTAG_TT_
29._GC-01-026-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
30._RUQ_234
ATCCCCCC____CTTTAG_TT_
31._SCA_6
ATCCCCCC____CTTTAG_TT_
32._SCA_6
ATCCCCCC____CTTTAG_TT_
33._SCA_6
ATCCCCCC____CTTTAG_TT_
34._SCA_6
ATCCCCCC____CTTTAG_TT_
35._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
36._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
37._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
38._GC-01-26-2-03
ATCCCCCCAGAATTTTCTTTAGTTTTTT
39._RUQ_234
__CCCC__CT_CT__TTTT_
40._SCA_6
ATCCCCCC____CTTTAG_TT_
41._RUQ_234B
___CC__CT_______
42._SCA_6
ATCCCCCC____CCTTAG_TT_
43._SCA6
___CC____CT___TT_
44._RUQ_234
ATCC_CCAGAA_AAAG_AGAAAAAA
45._MITC-000343
ATCC_CCAGAA_AAAG_AGAAAAAA
46._MITC-000344
ATCC_CCAGAA_AAAG_AGAAAAAA
47._MITC-000345
ATCC_CCAGAA_AAAG_AGAAAAAA
48._MITC-000347
ATCC_CCAGAA_AAAG_AGAAAAAA
49._MITC-000348
ATCC_CCAGAA_AAAG_AGAAAAAA
50._MITC-000349
ATCC_CCAGAA_AAAG_AGAAAAAA
51._MITC-000376
ATCC_CCAGAA_AAAG_AGAAAAAA
52._MITC-000452
ATCC_CCAGAA_AAAG_AGAAAAAA
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATAC_ACAGAG_AGGG_AGAAAGAG
54._SCA_6_Fld#_16_Plt#_1
ATAC_ACAGAG_AGGG_AGAAAGAG
 1516171819202122232425262728
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGG_AAGG
11._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._SCA_6
___GG__CC____AAAA_
13._SCA_6
___GG__CC____AAAA_
14._SCA_6
___GG__CC____AAAA_
15._SCA_6
___GG__CC____AAAA_
16._SCA_6
___GG__CC____AAAA_
17._SCA_6
___GG__CC____AAAA_
18._SCA_6
___GG__CC____AAAA_
19._SCA_6
___GG__CC____AAAA_
20._SCA_6
___GG__CC____AAAA_
21._SCA_6
___GG__CC____AAAA_
22._SCA_6
___GG__CC____AAAA_
23._SCA_6
___GG__CC____AAAA_
24._SCA_6
___GG__CC____AAAA_
25._SCA_6
___GG__CC____AAAA_
26._SCA_6
___GG__CC____AAAA_
27._SCA_6
___GG__CC____AAAA_
28._SCA_6
___GG__CC_____AA_
29._GC-01-026-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
30._RUQ_234
___GG__CC____AAAA_
31._SCA_6
___GG__CC____AAAA_
32._SCA_6
___GG__CC____AAAA_
33._SCA_6
___GG__CC____AAAA_
34._SCA_6
___GG__CC____AAAA_
35._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
36._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
37._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
38._GC-01-26-2-03
ATAAAAGGCCCGCCCCAACTGGAAAAGG
39._RUQ_234
_____CG____GG_AAGG
40._SCA_6
___GG__CC____AAAA_
41._RUQ_234B
___GGCC_________
42._SCA_6
___GG__CC____AAAA_
43._SCA6
__AA__CG_CC__GG_AAGG
44._RUQ_234
ATAAAAGGGG_CCGGAAAGGGAAAACC
45._MITC-000343
ATAAAAGGGG_CCGGAAAGGGAAAACC
46._MITC-000344
ATAAAAGGGG_CCGGAAAGGGAAAACC
47._MITC-000345
ATAAAAGGGG_CCGGAAAGGGAAAACC
48._MITC-000347
ATAAAAGGGG_CCGGAAAGGGAAAACC
49._MITC-000348
ATAAAAGGGG_CCGGAAAGGGAAAACC
50._MITC-000349
ATAAAAGGGG_CCGGAAAGGGAAAACC
51._MITC-000376
ATAAAAGGGG_CCGGAAAGGGAAAACC
52._MITC-000452
ATAAAAGGGG_CCGGAAAGGGAAAACC
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ATACAGAGCG_CCAGAGAAGGATAACG
54._SCA_6_Fld#_16_Plt#_1
ATACAGAGCG_CCAGAGAAGGATAACG
 2930313233343536373839404142
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._SCA_6
CCTT___CG_AAGG__AG__
13._SCA_6
CCTT___CG_AAGG__AG__
14._SCA_6
CCTT___CG_AAGG__AG__
15._SCA_6
CCTT___CG_AAGG__AG__
16._SCA_6
CCTT___CG_AAGG__AG__
17._SCA_6
CCTT___CG_AAGG__AG__
18._SCA_6
CCTT___CG_AAGG__AG__
19._SCA_6
CCTT___CG_AAGG__AG__
20._SCA_6
CCTT___CG_AAGG__AG__
21._SCA_6
CCTT___CG_AAGG__AG__
22._SCA_6
CCTT___CG_AAGG__AG__
23._SCA_6
CCTT___CG_AAGG__AG__
24._SCA_6
CCTT___CG_AAGG__AG__
25._SCA_6
CCTT___CG_AAGG__AG__
26._SCA_6
CCTT___CG_AAGG__AG__
27._SCA_6
CCTT___CG_AAGG__AG__
28._SCA_6
CCTT___CG_AAGG__AG__
29._GC-01-026-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
30._RUQ_234
CCTT___CG_AAGG__AG__
31._SCA_6
CCTT___CG_AAGG__AG__
32._SCA_6
CCTT___CG_AAGG__AG__
33._SCA_6
CCTT___CG_AAGG__AG__
34._SCA_6
CCTT___CG_AAGG__AG__
35._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
36._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
37._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
38._GC-01-26-2-03
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
39._RUQ_234
CC___GGCGCCAAGG__AGCC_
40._SCA_6
CCTT___CG_AAGG__AG__
41._RUQ_234B
CC____CG_AA____CC_
42._SCA_6
CCTT___CG_AAGG__AG__
43._SCA6
GG___GGCG____TT_CC_
44._RUQ_234
GGTTAAAAGGCGCCAACCAAAAAGGGGG
45._MITC-000343
GGTTAAAAGGCGCCAACCAAAAAGGGGG
46._MITC-000344
GGTTAAAAGGCGCCAACCAAAAAGGGGG
47._MITC-000345
GGTTAAAAGGCGCCAACCAAAAAGGGGG
48._MITC-000347
GGTTAAAAGGCGCCAACCAAAAAGGGGG
49._MITC-000348
GGTTAAAAGGCGCCAACCAAAAAGGGGG
50._MITC-000349
GGTTAAAAGGCGCCAACCAAAAAGGGGG
51._MITC-000376
GGTTAAAAGGCGCCAACCAAAAAGGGGG
52._MITC-000452
GGTTAAAAGGCGCCAACCAAAAAGGGGG
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
CGATAAACAGCGCCAGACACAAAGAGAG
54._SCA_6_Fld#_16_Plt#_1
CGATAAACAGCGCCAGACACAAAGAGAG
 4344454647484950515253545556
_Input profile
CGGGTTCTAGAAAACCAAAAAAGGTTCC
1._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
2._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
3._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
4._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
5._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
6._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
7._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
8._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
9._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
10._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
11._GC-01-026-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
12._SCA_6
___CT________TTCC
13._SCA_6
___CT________TTCC
14._SCA_6
___CT________TTCC
15._SCA_6
___CT________TTCC
16._SCA_6
___CT________TTCC
17._SCA_6
___CT________TTCC
18._SCA_6
___CT________TTCC
19._SCA_6
___CT________TTCC
20._SCA_6
___CT________TTCC
21._SCA_6
___CT________TTCC
22._SCA_6
___CT________TTCC
23._SCA_6
___CT________TTCC
24._SCA_6
___CT________TTCC
25._SCA_6
___CT________TTCC
26._SCA_6
___CT________TTCC
27._SCA_6
___CT________TTCC
28._SCA_6
___CT________TTCC
29._GC-01-026-2-03
CGGGTTCTAGGGAACCAAAAAAGGTTCC
30._RUQ_234
___CT________TTCC
31._SCA_6
___CT________TTCC
32._SCA_6
___CT________TTCC
33._SCA_6
___CT________TTCC
34._SCA_6
___CT________TTCC
35._GC-01-26-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
36._GC-01-26-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
37._GC-01-26-2-03
CGGGTTCTAG_AACCAAAAAAGGTTCC
38._GC-01-26-2-03
CGGGTTCTAGAAAACCAAAAAAGGTTCC
39._RUQ_234
_GGTT__AA______TT_
40._SCA_6
___CT________TTCC
41._RUQ_234B
_____AA________
42._SCA_6
___TT________TTCC
43._SCA6
__TT_AG_______TT_
44._RUQ_234
CGCC_AG_AAAAGG_AAAACCAAGG
45._MITC-000343
CGCC_AG_AAAAGG_AAAACCAAGG
46._MITC-000344
CGCC_AG_AAAAGG_AAAACCAAGG
47._MITC-000345
CGCC_AG_AAAAGG_AAAACCAAGG
48._MITC-000347
CGCC_AG_AAAAGG_AAAACCAAGG
49._MITC-000348
CGCC_AG_AAAAGG_AAAACCAAGG
50._MITC-000349
CGCC_AG_AAAAGG_AAAACCAAGG
51._MITC-000376
CGCC_AG_AAAAGG_AAAACCAAGG
52._MITC-000452
CGCC_AG_AAAAGG_AAAACCAAGG
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
GGCC_GG_AGAAGG_AGAGACAGAG
54._SCA_6_Fld#_16_Plt#_1
GGCC_GG_AGAAGG_AGAGACAGAG
 5758596061626364656667686970
_Input profile
TTGGCCCCCTCCCCGGACAAGGGGAACT
1._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
2._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
3._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
4._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
5._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
6._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
7._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
8._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
9._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAA_
10._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
11._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
12._SCA_6
__CC_CTCCCC_ACAAGGGG__
13._SCA_6
__CC_CTCCCC_ACAAGGGG__
14._SCA_6
__CC_CTCCCC_ACAAGGGG__
15._SCA_6
__CC_CTCCCC_ACAAGGGG__
16._SCA_6
__CC_CTCCCC_ACAAGGGG__
17._SCA_6
__CC_CTCCCC_ACAAGGGG__
18._SCA_6
__CC_CTCCCC_ACAAGGGG__
19._SCA_6
__CC_CTCCCC_ACAAGGGG__
20._SCA_6
__CC_CTCCCC_ACAAGGGG__
21._SCA_6
__CC_CTCCCC_ACAAGGGG__
22._SCA_6
__CC_CTCCCC_ACAAGGGG__
23._SCA_6
__CC_CTCCCC_ACAAGGGG__
24._SCA_6
__CC_CTCCCC_ACAAGGGG__
25._SCA_6
__CC_CTCCCC_ACAAGGGG__
26._SCA_6
__CC_CTCCCC_ACAAGGGG__
27._SCA_6
__CC_CTCCCC_ACAAGGGG__
28._SCA_6
__CC_CTCCCC_ACAAGGGG__
29._GC-01-026-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
30._RUQ_234
__CC_CTCCCC_ACAAGGGG__
31._SCA_6
__CC_CTCCCC_ACAAGGGG__
32._SCA_6
__CC_CTCCCC_ACAAGGGG__
33._SCA_6
__CC_CTCCCC_ACAAGGGG__
34._SCA_6
__CC_CTCCCC_ACAAGGGG__
35._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
36._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
37._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
38._GC-01-26-2-03
TTGGCCCCCTCCCCGGACAAGGGGAACT
39._RUQ_234
TT-CCCCCTCC_GGCCAAGGGGAA_
40._SCA_6
__CC_CTCCCC_ACAAGGGG__
41._RUQ_234B
_GG______ACAA_GGAA_
42._SCA_6
__CC_TTCCCC_ACAAGGGG__
43._SCA6
__GGCC_CC_GGCCAA____
44._RUQ_234
AAGGGGGGAGCCCCGGACAACCCCAA_
45._MITC-000343
AAGGGGGGAGCCCCGGACAACCCCAA_
46._MITC-000344
AAGGGGGGAGCCCCGGACAACCCCAA_
47._MITC-000345
AAGGGGGGAGCCCCGGACAACCCCAA_
48._MITC-000347
AAGGGGGGAGCCCCGGACAACCCCAA_
49._MITC-000348
AAGGGGGGAGCCCCGGACAACCCCAA_
50._MITC-000349
AAGGGGGGAGCCCCGGACAACCCCAA_
51._MITC-000376
AAGGGGGGAGCCCCGGACAACCCCAA_
52._MITC-000452
AAGGGGGGAGCCCCGGACAACCCCAA_
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AAAGGGAGGGACCGGGAAAAACCCAG_
54._SCA_6_Fld#_16_Plt#_1
AAAGGGAGGGACCGGGAAAAACCCAG_
 7172737475767778798081828384
_Input profile
CGAACCCCGGCCCCAAAACCCCAACCTT
1._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
2._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
3._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
4._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
5._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
6._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
7._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
8._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
9._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
10._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
11._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
12._SCA_6
_AACC_____AACC___TT
13._SCA_6
_AACC_____AACC___TT
14._SCA_6
_AACC_____AACC___TT
15._SCA_6
_AACC_____AACC___TT
16._SCA_6
_AACC_____AACC___TT
17._SCA_6
_AACC_____AACC___TT
18._SCA_6
_AACC_____AACC___TT
19._SCA_6
_AACC_____AACC___TT
20._SCA_6
_AACC_____AACC___TT
21._SCA_6
_AACC_____AACC___TT
22._SCA_6
_AACC_____AACC___TT
23._SCA_6
_AACC_____AACC___TT
24._SCA_6
_AACC_____AACC___TT
25._SCA_6
_AACC_____AACC___TT
26._SCA_6
_AACC_____AACC___TT
27._SCA_6
_AACC_____AACC___TT
28._SCA_6
_AACC_____AACC___TT
29._GC-01-026-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
30._RUQ_234
_AGCC_____AACC___TT
31._SCA_6
_AGCC_____AACC___TT
32._SCA_6
_AGCC_____AACC___TT
33._SCA_6
_AGCC_____AACC___TT
34._SCA_6
_AGCC_____AACC___TT
35._GC-01-26-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
36._GC-01-26-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
37._GC-01-26-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
38._GC-01-26-2-03
CGAACCCCGGCCCCAAAACCCCAACCTT
39._RUQ_234
________AACC__CCTT
40._SCA_6
_AGCC_____AACC___TT
41._RUQ_234B
_AG______AACC__CC_
42._SCA_6
_AGCT_____AACC___TT
43._SCA6
CG________GG____
44._RUQ_234
__GGCCGGCCCC_AAGGGGAACCAA
45._MITC-000343
__GGCCGGCCCC_AAGGGGAACCAA
46._MITC-000344
__GGCCGGCCCC_AAGGGGAACCAA
47._MITC-000345
__GGCCGGCCCC_AAGGGGAACCAA
48._MITC-000347
__GGCCGGCCCC_AAGGGGAACCAA
49._MITC-000348
__GGCCGGCCCC_AAGGGGAACCAA
50._MITC-000349
__GGCCGGCCCC_AAGGGGAACCAA
51._MITC-000376
__GGCCGGCCCC_AAGGGGAACCAA
52._MITC-000452
__GGCCGGCCCC_AAGGGGAACCAA
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
__AGACAGCCAC_ACCGGGATACAA
54._SCA_6_Fld#_16_Plt#_1
__AGACAGCCAC_ACCGGGATACAA
 85868788899091929394    
_Input profile
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
1._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
2._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
3._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
4._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
5._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
6._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
7._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
8._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
9._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
10._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
11._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
12._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
13._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
14._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
15._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
16._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
17._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
18._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
19._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
20._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
21._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
22._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
23._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
24._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
25._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
26._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
27._SCA_6
CCCC_GG_CTGG___X_XX_XX_XX_X
28._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
29._GC-01-026-2-03
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
30._RUQ_234
CCCC_GG_CTGGCC__X_XX_XX_XX_X
31._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
32._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
33._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
34._SCA_6
CCCC_GG_CTGGCC__X_XX_XX_XX_X
35._GC-01-26-2-03
CCCCCCGGCCCTGGCCCCCCX_XX_XX_XX_X
36._GC-01-26-2-03
CCCCCCGGCCCTGGCCCCCCX_XX_XX_XX_X
37._GC-01-26-2-03
CCCCCCGGCCCTGGCCCCCCX_XX_XX_XX_X
38._GC-01-26-2-03
CCCCCCGGCCCTGG_CCCCX_XX_XX_XX_X
39._RUQ_234
___GGCCCTGG___X_XX_XX_XX_X
40._SCA_6
CCCC_GG_TTGGCC__X_XX_XX_XX_X
41._RUQ_234B
_CC__CC_GG___X_XX_XX_XX_X
42._SCA_6
CCCC_GG_TTGGCC__X_XX_XX_XX_X
43._SCA6
CC_________X_XX_XX_XX_X
44._RUQ_234
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
45._MITC-000343
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
46._MITC-000344
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
47._MITC-000345
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
48._MITC-000347
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
49._MITC-000348
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
50._MITC-000349
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
51._MITC-000376
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
52._MITC-000452
GG_GG__AGCCGGAAAGX_XX_XX_XX_X
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
AG_GG__GGACAGATAGX_XX_XX_XX_X
54._SCA_6_Fld#_16_Plt#_1
AG_GG__GGACAGATAGX_XX_XX_XX_X

Input profile: SCA_6 GC-01-026-2-03

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

3._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

9._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

10._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

11._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

12._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

13._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

14._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

15._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

16._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

17._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

18._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

19._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

20._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

21._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

22._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

23._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

24._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

25._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

26._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

27._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

28._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

29._SCA_6 GC-01-026-2-03

98.9 %
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._SCA_6 RUQ_234

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

32._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

33._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

34._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

35._SCA_6 GC-01-26-2-03

97.9 %
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

36._SCA_6 GC-01-26-2-03

97.9 %
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

37._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

38._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

39._SCA_6 RUQ_234

97.6 %
41 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

40._SCA_6

97.5 %
40 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

41._SCA_6 RUQ_234B

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

42._SCA_6

92.5 %
40 shared markers

 View  View all  Clone  Any
Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

43._SCA_6 SCA6

86.5 %
26 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

44._SCA_6 RUQ_234

52.5 %
80 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

45._SCA_6 MITC-000343

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

46._SCA_6 MITC-000344

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

47._SCA_6 MITC-000345

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

48._SCA_6 MITC-000347

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

49._SCA_6 MITC-000348

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

50._SCA_6 MITC-000349

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

51._SCA_6 MITC-000376

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

52._SCA_6 MITC-000452

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

53._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

54._SCA_6 SCA_6_Fld#_16_Plt#_1

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240