SNP Profiles of MA 12   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAAGGCCTTCCTTTTCCTTAAAACTAA
1._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
2._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
3._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
4._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
5._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
6._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
7._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
8._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
9._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
10._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
11._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
12._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
13._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
14._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
15._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
16._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
17._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
18._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
19._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
20._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
21._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
22._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
23._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
24._MA_12_[BRA]___
CCAAGGCCTTCCTTTTCCTTAAAACTAA
25._MA_12_[BRA]___
__AAGGCCTTCCTTTTCC__AAAACTAA
26._MA_12_[BRA]___
__AAGGCC______TT________CTAA
27._MA_12_[BRA]___
CCAGGGCCTTCCTTTTCCTTAAAACTAA
28._MA_12_[BRA]___
____GG________TT__TT__AA__AA
29._MA_12_[BRA]___
____CC__________________CT__
30._MA_12_[BRA]___
GGAACCGGAACCAAAA____AAAAAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAAGGCCCCCGGTAACCAACCTTCCCC
1._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
2._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
3._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
4._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
5._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
6._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
7._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
8._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
9._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
10._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
11._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
12._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
13._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
14._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
15._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
16._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
17._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
18._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
19._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
20._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
21._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
22._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
23._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
24._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
25._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
26._MA_12_[BRA]___
________CCCGGT__CCAACCTTCCCC
27._MA_12_[BRA]___
CTAAGGCCCCCGGTAACCAACCTTCCCC
28._MA_12_[BRA]___
__________CGGTAA__AACC____AC
29._MA_12_[BRA]___
CT______CCCG______AACC______
30._MA_12_[BRA]___
AGAAGGGGGGCGAC__GGAACCAA__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
1._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
2._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
3._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
4._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
5._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
6._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
7._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
8._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
9._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
10._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
11._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
12._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
13._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
14._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
15._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
16._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
17._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
18._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
19._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
20._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
21._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
22._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
23._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
24._MA_12_[BRA]___
AAGGAACTAGCCAACCTTCCTTGGX_XX_X
25._MA_12_[BRA]___
AAGGAACTAG__AACCTTCCTTGGX_XX_X
26._MA_12_[BRA]___
AA__AACTAGCCAACCTTCC____X_XX_X
27._MA_12_[BRA]___
AAGGAACTAGCCAACCGTCCTTGGX_XX_X
28._MA_12_[BRA]___
________AG________CC____X_XX_X
29._MA_12_[BRA]___
____AA__AGGGAACC__CC____X_XX_X
30._MA_12_[BRA]___
__GGAAAGAGGGAAGGAACCTTGGX_XX_X

Input profile: MA_12_[BRA]

 
Mars Center for Cocoa Science, Brazil
Location: 8156 7
 Dapeng Zhang, 2016

1._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7302 1 > FP
 Dapeng Zhang, 2016

2._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

5._MA_12_[BRA] GC-07-067-4-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._MA_12_[BRA] GC-07-067-4-03

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._MA_12_[BRA] GC-07-047-3-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

8._MA_12_[BRA] GC-07-047-3-02

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

9._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

10._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

12._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7302 2 > FP
 Dapeng Zhang, 2016

14._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7403 3
 Dapeng Zhang, 2016

15._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7403 1 > FP
 Dapeng Zhang, 2016

16._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 2
 Dapeng Zhang, 2016

17._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 3
 Dapeng Zhang, 2016

18._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 5
 Dapeng Zhang, 2016

19._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 6
 Dapeng Zhang, 2016

20._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 10
 Dapeng Zhang, 2016

21._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 1 > FP
 Dapeng Zhang, 2016

22._MA_12_[BRA]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8156 4 > FP
 Dapeng Zhang, 2016

23._MA_12_[BRA] GC-08-045-1-56

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

24._MA_12_[BRA]

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: V3 20
 Dapeng Zhang, 2016

25._MA_12_[BRA]

identical
37 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

26._MA_12_[BRA] RUQ_124

identical
24 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

27._MA_12_[BRA] RUQ_124

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

28._MA_12_[BRA] RUQ_124

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

29._MA_12_[BRA] MA12[BRA]

84.6 %
13 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

30._MA_12_[BRA] RUQ_124

51.4 %
35 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25