SNP Profiles of MA 12 [BRA]   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ACAAAAAAAAAGAACCAAGGAGAAAACC
1._MA_12_[BRA]___
____________AA______________
2._MA_12_[BRA]___
__________CT________AG______
3._MA_12_[BRA]___
__________CTAA__AA__________
4._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
5._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
6._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
7._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
8._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
9._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
10._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
11._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
12._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
13._MA_12_[BRA]___
__________CTAA__AA__________
14._MA_12_[BRA]___
__________CTAA__AA__________
15._MA_12_[BRA]___
__________CTAA__AA__________
16._MA_12_[BRA]___
__________CTAA__AA__________
17._MA_12_[BRA]___
__________CTAA__AA__________
18._MA_12_[BRA]___
__________CTAA__AA__________
19._MA_12_[BRA]___
__________CTAA__AA__________
20._MA_12_[BRA]___
__________CTAA__AA__________
21._MA_12_[BRA]___
__________CTAA__AA__________
22._MA_12_[BRA]___
__________CTAA__AA__________
23._MA_12_[BRA]___
__________CTAA__AA__________
24._MA_12_[BRA]___
__________CTAA__AA__________
25._MA_12_[BRA]___
__________CTAA__AA__________
26._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
27._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
28._MA_12_[BRA]___
ACAAAAAATTCTAAGGAACCAGTTTTGG
29._MA_12_[BRA]___
__________CTAA__AA__________
30._MA_12_[BRA]___
__________CT__GG____AG______
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAAAGGCCGGAAAACCGGCCAAAAGG
1._MA_12_[BRA]___
__TT____________CC__GG______
2._MA_12_[BRA]___
______________TTCC__CC____CC
3._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
4._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
5._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
6._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
7._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
8._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
9._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
10._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
11._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
12._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
13._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
14._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
15._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
16._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
17._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
18._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
19._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
20._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
21._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
22._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
23._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
24._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
25._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAATTCC
26._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
27._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
28._MA_12_[BRA]___
TTTTTT__CCGGTTTTCCCCGGAATTCC
29._MA_12_[BRA]___
__TTTT__CC__TT__CCCCGGAGGTCC
30._MA_12_[BRA]___
__TT__CC______TTCCCCGGAATTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGATGGAAGGAGGGAGGGCCTTTTGGGG
1._MA_12_[BRA]___
__________AG____________GG__
2._MA_12_[BRA]___
____GGAAGGAG______________GG
3._MA_12_[BRA]___
______AA__AG__CTGG____TT____
4._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
5._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
6._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
7._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
8._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
9._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
10._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
11._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
12._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
13._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
14._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
15._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
16._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
17._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
18._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
19._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
20._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
21._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
22._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
23._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
24._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
25._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
26._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
27._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
28._MA_12_[BRA]___
CCATGGAACCAGGGCTGGGGAATTGGGG
29._MA_12_[BRA]___
CC____AACCAG__CTGG____TT____
30._MA_12_[BRA]___
____GGAACCAG__CT________GGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAGGGGGGGATGGAACCCCAGAAAGCC
1._MA_12_[BRA]___
__________________AC______CC
2._MA_12_[BRA]___
AACT________CC____________CC
3._MA_12_[BRA]___
AA______GG________CC__TT__CC
4._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
5._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
6._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
7._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
8._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
9._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
10._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
11._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
12._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
13._MA_12_[BRA]___
AA______GG________CC__TT__CC
14._MA_12_[BRA]___
AA______GG________CC__TT__CC
15._MA_12_[BRA]___
AA______GG________CC__TT__CC
16._MA_12_[BRA]___
AA______GG________CC__TT__CC
17._MA_12_[BRA]___
AA______GG________CC__TT__CC
18._MA_12_[BRA]___
AA______GG________CC__TT__CC
19._MA_12_[BRA]___
AA______GG________CC__TT__CC
20._MA_12_[BRA]___
AA______GG________CC__TT__CC
21._MA_12_[BRA]___
AA______GG________CC__TT__CC
22._MA_12_[BRA]___
AA______GG________CC__TT__CC
23._MA_12_[BRA]___
AA______GG________CC__TT__CC
24._MA_12_[BRA]___
AA______GG________CC__TT__CC
25._MA_12_[BRA]___
AA______GG________CC__TT__CC
26._MA_12_[BRA]___
AACTGGGGGGATCC__CCCC__TTAGCC
27._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
28._MA_12_[BRA]___
AACTGGGGGGATCC__CCCCAGTTAGCC
29._MA_12_[BRA]___
AA______GG________CC__TT__CC
30._MA_12_[BRA]___
AA__________CC____CC__TT__CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
AAGGGGGGAAAAACAGAAAAAAAAACCC
1._MA_12_[BRA]___
AA__CC______GTAG________ACTT
2._MA_12_[BRA]___
AA__CC____________TT________
3._MA_12_[BRA]___
AA____CC____GT______________
4._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
5._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
6._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
7._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
8._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
9._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
10._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
11._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
12._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
13._MA_12_[BRA]___
AA____CC____GT______________
14._MA_12_[BRA]___
AA____CC____GT______________
15._MA_12_[BRA]___
AA____CC____GT______________
16._MA_12_[BRA]___
AA____CC____GT______________
17._MA_12_[BRA]___
AA____CC____GT______________
18._MA_12_[BRA]___
AA____CC____GT______________
19._MA_12_[BRA]___
AA____CC____GT______________
20._MA_12_[BRA]___
AA____CC____GT______________
21._MA_12_[BRA]___
AA____CC____GT______________
22._MA_12_[BRA]___
AA____CC____GT______________
23._MA_12_[BRA]___
AA____CC____GT______________
24._MA_12_[BRA]___
AA____CC____GT______________
25._MA_12_[BRA]___
AA____CC____GT______________
26._MA_12_[BRA]___
AACCCCCCAAAAGTAGTTTTTTTTACGG
27._MA_12_[BRA]___
AACCCCCCAA__GTAGTTTTTTTTACGG
28._MA_12_[BRA]___
AACCCCCCAAAAGT__TTTTTTTTACGG
29._MA_12_[BRA]___
AA____CC____GT______________
30._MA_12_[BRA]___
AA__CCCC____GTAGTT____TTAC__
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
GGCGGGGGAACCGGGGGGAAAGAAX_XX_X
1._MA_12_[BRA]___
__CG____AA____________AAX_XX_X
2._MA_12_[BRA]___
GGCGCC______________CT__X_XX_X
3._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
4._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
5._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
6._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
7._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
8._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
9._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
10._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
11._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
12._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
13._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
14._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
15._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
16._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
17._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
18._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
19._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
20._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
21._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
22._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
23._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
24._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
25._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
26._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
27._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
28._MA_12_[BRA]___
__CGCCCCAACCCCGGCCAACTAAX_XX_X
29._MA_12_[BRA]___
__CGCC______CCGG__AACTAAX_XX_X
30._MA_12_[BRA]___
__CGCC__AACC__________AAX_XX_X

Input profile: MA_12_[BRA] RUQ_124

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._MA_12_[BRA] RUQ_124

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.557 GU
0.051 IMC
0.323

2._MA_12_[BRA] MA12[BRA]

59.1 %
22 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

3._MA_12_[BRA]

54.5 %
33 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

4._MA_12_[BRA] GC-08-045-1-56

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._MA_12_[BRA] GC-08-045-1-56

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

6._MA_12_[BRA] GC-08-045-1-56

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

7._MA_12_[BRA] GC-08-045-1-56

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._MA_12_[BRA] GC-08-045-1-56

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

9._MA_12_[BRA] GC-07-067-4-03

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

10._MA_12_[BRA] GC-07-067-4-03

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._MA_12_[BRA] GC-07-047-3-02

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

12._MA_12_[BRA] GC-08-045-1-56

51.9 %
79 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 4 > FP
 Dapeng Zhang, 2016

14._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 1 > FP
 Dapeng Zhang, 2016

15._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 2 > FP
 Dapeng Zhang, 2016

16._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 3
 Dapeng Zhang, 2016

17._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 1 > FP
 Dapeng Zhang, 2016

18._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 2
 Dapeng Zhang, 2016

19._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 3
 Dapeng Zhang, 2016

20._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 5
 Dapeng Zhang, 2016

21._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 6
 Dapeng Zhang, 2016

22._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 7
 Dapeng Zhang, 2016

23._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 10
 Dapeng Zhang, 2016

24._MA_12_[BRA]

51.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 1 > FP
 Dapeng Zhang, 2016

25._MA_12_[BRA]

51.4 %
35 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: V3 20
 Dapeng Zhang, 2016

26._MA_12_[BRA] GC-08-045-1-56

51.3 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._MA_12_[BRA] GC-07-047-3-02

51.3 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

28._MA_12_[BRA] GC-08-045-1-56

51.3 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

29._MA_12_[BRA] RUQ_124

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._MA_12_[BRA] RUQ_124

48.6 %
37 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998