SNP Profiles of MA12[BRA]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCTTTTAGCTCCCTCCGGCGGGTTAACC
1._MA_12_[BRA]___
GG______CT__CTCC__CG________
2._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
3._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
4._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
5._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
6._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
7._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
8._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
9._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
10._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
11._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
12._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
13._MA_12_[BRA]___
GGTTTTAGCTCCCTCCCCCG__TTAACC
14._MA_12_[BRA]___
GG________________CG______CC
15._MA_12_[BRA]___
GGTTTTAGCT____CCCCCG______CC
16._MA_12_[BRA]___
GG______CT__CTCC__CG________
17._MA_12_[BRA]___
GG______CT__CTCC__CG________
18._MA_12_[BRA]___
GG______CT__CTCC__CG________
19._MA_12_[BRA]___
GG______CT__CTCC__CG________
20._MA_12_[BRA]___
GG______CT__CTCC__CG________
21._MA_12_[BRA]___
GG______CT__CTCC__CG________
22._MA_12_[BRA]___
GG______CT__CTCC__CG________
23._MA_12_[BRA]___
GG______CT__CTCC__CG________
24._MA_12_[BRA]___
GG______CT__CTCC__CG________
25._MA_12_[BRA]___
GG______CT__CTCC__CG________
26._MA_12_[BRA]___
GG______CT__CTCC__CG________
27._MA_12_[BRA]___
GG______CT__CTCC__CG________
28._MA_12_[BRA]___
GG______CT__CTCC__CG________
29._MA_12_[BRA]___
GG______CT__CTCC__CG________
30._MA_12_[BRA]___
CCAA__AGAG__AGGG__CGGGAA__GG
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
AACCCCCTAAGGAGGGAAGGCCCCX_XX_X
1._MA_12_[BRA]___
AACC____AA__AG__AA__CCCCX_XX_X
2._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
3._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
4._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
5._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
6._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
7._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
8._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
9._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
10._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
11._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
12._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
13._MA_12_[BRA]___
AACCCCCTAAGGAGCCAAGGCCCCX_XX_X
14._MA_12_[BRA]___
AACC________AG________CCX_XX_X
15._MA_12_[BRA]___
AACCCC__AAGGAGCCAAGGCCCCX_XX_X
16._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
17._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
18._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
19._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
20._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
21._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
22._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
23._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
24._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
25._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
26._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
27._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
28._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
29._MA_12_[BRA]___
AACC____AA__AGCCAA__CCCCX_XX_X
30._MA_12_[BRA]___
AACCGGAGAAGGAGGGAAGGGGCCX_XX_X

Input profile: MA_12_[BRA] MA12[BRA]

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._MA_12_[BRA]

91.7 %
12 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

2._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

5._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

8._MA_12_[BRA] GC-07-067-4-03

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._MA_12_[BRA] GC-07-067-4-03

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._MA_12_[BRA] GC-07-047-3-02

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

11._MA_12_[BRA] GC-07-047-3-02

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP2
 Mars, 2018

12._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._MA_12_[BRA] GC-08-045-1-56

88 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._MA_12_[BRA] RUQ_124

85.7 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.557 GU
0.051 IMC
0.323

15._MA_12_[BRA] RUQ_124

85 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

16._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 4 > FP
 Dapeng Zhang, 2016

17._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 1 > FP
 Dapeng Zhang, 2016

18._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7302 2 > FP
 Dapeng Zhang, 2016

19._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 3
 Dapeng Zhang, 2016

20._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7403 1 > FP
 Dapeng Zhang, 2016

21._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 2
 Dapeng Zhang, 2016

22._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 3
 Dapeng Zhang, 2016

23._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 5
 Dapeng Zhang, 2016

24._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 6
 Dapeng Zhang, 2016

25._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 7
 Dapeng Zhang, 2016

26._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 10
 Dapeng Zhang, 2016

27._MA_12_[BRA]

84.6 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8156 1 > FP
 Dapeng Zhang, 2016

28._MA_12_[BRA] RUQ_124

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

29._MA_12_[BRA]

84.6 %
13 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: V3 20
 Dapeng Zhang, 2016

30._MA_12_[BRA] RUQ_124

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144