SNP Profiles of UF613   View Data

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 Key

 1234567891011121314
_Input profile
CCCTTTAGCTCCTTCTCGCCAGTTAACT
1._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
2._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
3._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
4._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
5._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
6._GC-05-057-2-08
GGCTTTAGCTCCTTCTCGGGAATTAACT
7._GC-05-057-2-08
GGCTTTAGCTCCTTCTCGGGAATTAACT
8._GC-05-057-2-08
GGCTTTAGCTCCTTCTCGGGAATTAACT
9._GC-05-057-2-08
GGCTTTAGCTCCTTCTCGGGAATTAACT
10._GC-05-057-2-08
GGCTTTAGCTCCTTCTCGGGAATTAACT
11._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
12._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
13._GC-08-046-1-57
GGCTTTAGCTCCTTCTCGGGAATTAACT
14._RUQ_1573
GGCTTTAGCT__CTCGGG___CT
15._UF_613
GG___CT_TTCT_GG____
16._UF_613
GG___CT_TTCT_GG____
17._UF_613
GG___CT_TTCT_GG____
18._UF_613
GG___CT_TTCT_GG____
19._UF_613
GG___CT_TTCT_GG____
20._UF_613
GG___CT_TTCT_GG____
21._UF_613
GG___CT_TTCT_GG____
22._UF_613
GG___CT_TTCT_GG____
23._UF_613
GG___CT_TTCT_GG____
24._UF_613
GG___CT_TTCT_GG____
25._UF_613
GG___CT_TTCT_GG____
26._UF_613
GG___CT_TTCT_GG____
27._UF_613
GG___CT_TTCT_GG____
28._UF_613
GG___CT_TTCT_GG____
29._RUQ_1573
GG___CT_TTCT_GG____
30._RUQ_1573
GG________GG___CT
31._UF_613
CG___TT_CTCT_CG____
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_Input profile
ACCCCGCTATGGAGGGACAGCTCCX_XX_X
1._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
2._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
3._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
4._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
5._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
6._GC-05-057-2-08
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
7._GC-05-057-2-08
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
8._GC-05-057-2-08
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
9._GC-05-057-2-08
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
10._GC-05-057-2-08
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
11._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
12._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
13._GC-08-046-1-57
ACCCCGCTATGGAGCCACAGCTCCX_XX_X
14._RUQ_1573
ACCCCG_ATGGAGCCACAGCTCCX_XX_X
15._UF_613
ACCC__AT_AG_AC_CTCCX_XX_X
16._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
17._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
18._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
19._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
20._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
21._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
22._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
23._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
24._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
25._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
26._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
27._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
28._UF_613
ACCC__AT_AGCCAC_CTCCX_XX_X
29._RUQ_1573
ACCC__AT_AGCCAC_CTCCX_XX_X
30._RUQ_1573
ACCC____AG____CCX_XX_X
31._UF_613
ACCG__AA_AGCCCC_TTAAX_XX_X

Input profile: UF_613 RUQ_1573

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

2._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

4._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

6._UF_613 GC-05-057-2-08

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

7._UF_613 GC-05-057-2-08

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

8._UF_613 GC-05-057-2-08

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._UF_613 GC-05-057-2-08

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._UF_613 GC-05-057-2-08

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

11._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

12._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

13._UF_613 GC-08-046-1-57

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

14._UF_613 RUQ_1573

85 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

15._UF_613

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A93 T2
 Dapeng Zhang, 2016

16._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 10
 Dapeng Zhang, 2016

17._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 4 > FP
 Dapeng Zhang, 2016

18._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 3 > FP
 Dapeng Zhang, 2016

19._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 1 > FP
 Dapeng Zhang, 2016

20._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

21._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 7
 Dapeng Zhang, 2016

22._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 6
 Dapeng Zhang, 2016

23._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 5 > FP
 Dapeng Zhang, 2016

24._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 4 > FP
 Dapeng Zhang, 2016

25._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 1 > FP
 Dapeng Zhang, 2016

26._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 3
 Dapeng Zhang, 2016

27._UF_613

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5208 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._UF_613

76.9 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

29._UF_613 RUQ_1573

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._UF_613 RUQ_1573

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

31._UF_613

53.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8157 5
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144