SNP Profiles of ICS95   View Data

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 Key

 1234567891011121314
_Input profile
CCCTATGGCTCCCTCCCGCGAGGTAGCT
1._RUQ_1144
____CT_CTCC_CG____
2._RUQ_1144
CGCTATGGCT__CCCGCG___CT
3._ICS_95
CG___CT_CTCC_CG____
4._ICS_95
CG___CT_CTCC_CG____
5._ICS_95
CG___CT_CTCC_CG____
6._ICS_95
CG___CT_CTCC_CG____
7._ICS_95
CG___CT_CTCC_CG____
8._ICS_95
CG___CT_CTCC_CG____
9._ICS_95
CG___CT_CTCC_CG____
10._ICS_95
CG___CT_CTCC_CG____
11._ICS_95
CG___CT_CTCC_CG____
12._ICS_95
CG___CT_CTCC_CG____
13._ICS_95
CG___CT_CTCC_CG____
14._ICS_95
CG___CT_CTCC_CG____
15._ICS_95
CG___CT_CTCC_CG____
16._ICS_95
CG___CT_CTCC_CG____
17._ICS_95
CG___CT_CTCC_CG____
18._ICS_95
CG___CT_CTCC_CG____
19._ICS_95
CG___CT_CTCC_CG____
20._ICS_95
CG___CT_CTCC_CG____
21._ICS_95
CG___CT_CTCC_CG____
22._ICS_95
CG___CT_CTCC_CG____
23._ICS_95
CG___CT_CTCC_CG____
24._ICS_95
CG___CT_CTCC_CG____
25._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
26._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
27._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
28._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
29._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
30._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
31._GC-02-2-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
32._GC-02-2-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
33._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
34._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
35._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
36._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
37._GC-02-002-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
38._GC-02-002-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
39._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
40._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
41._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
42._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
43._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
44._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
45._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
46._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
47._GC-02-2-1-02
CGCTATGGCTCC_CCCGCGAAGTAGCT
48._GC-01-128-7-05
CGCTATGGCTCCCT_CGCGAAGTAGCT
49._ICS_95
CG___CT_CT__CG____
50._ICS_95
CG___CT_CTCC_CG____
51._ICS_95
CG___CT__CC_CG____
52._GC-02-2-1-02
CGCTATGG_CC_CCCGCGAAGTAGCT
53._GC-03-039-4-03
CGCTATGGCT_CTCCCGCGAAGTAGCT
54._ICS_95
CG______CC_CG____
55._RUQ_1144
CG________CG___CT
56._ICS_95
GG___CT_CTCC_CG____
57._ICS_95
GG___CT_CTCC_CG____
58._ICS_95
GG___CT_CTCC_CG____
59._ICS_95
GG___CT_CTCC_CG____
60._GC-02-002-1-2
CCAG_GGAG_AGGG_CGAGAC_AG
61._RUQ_1144
CCAG_GGAG_AGGG_CGAGAC_AG
62._MITC-000342
CCAG_GGAG_AGGG_CGAGAC_AG
63._ICS_95_Fld#_13_Plt#_1
CCAG_GGAG_AGGG_CGAGAC_AG
 151617181920212223242526  
_Input profile
CCCCCGCTATAAGGCGACAGCTACX_XX_X
1._RUQ_1144
CCCC__AT_GGCGAC_CTACX_XX_X
2._RUQ_1144
CCCCCG_ATAAGGCGACAGCTACX_XX_X
3._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
4._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
5._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
6._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
7._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
8._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
9._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
10._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
11._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
12._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
13._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
14._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
15._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
16._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
17._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
18._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
19._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
20._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
21._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
22._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
23._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
24._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
25._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
26._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
27._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
28._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
29._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
30._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
31._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
32._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
33._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
34._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
35._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
36._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
37._GC-02-002-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
38._GC-02-002-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
39._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
40._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
41._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
42._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
43._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
44._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
45._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
46._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
47._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
48._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
49._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
50._ICS_95
CCCC__AT__CGAC_CTACX_XX_X
51._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
52._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
53._GC-03-039-4-03
CCCCCGCTATAA_CGACAGCTACX_XX_X
54._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
55._RUQ_1144
CCCC____GG____ACX_XX_X
56._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
57._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
58._ICS_95
CCCC__AT_GGCGAC_CTACX_XX_X
59._ICS_95
CCCC__AT_GGGGAC_CTACX_XX_X
60._GC-02-002-1-2
CCCCCGAGATAAGGCGACAGAGACX_XX_X
61._RUQ_1144
CCCCCGAGATAAGGCGACAGAGACX_XX_X
62._MITC-000342
CCCCCGAGATAAGGCGACAGAGACX_XX_X
63._ICS_95_Fld#_13_Plt#_1
CCCCCGAGATAAGGCGACAGAGACX_XX_X

Input profile: ICS_95 RUQ_1144

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._ICS_95 RUQ_1144

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_95 RUQ_1144

97.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3403 3
 Dapeng Zhang, 2016

4._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3404 15
 Dapeng Zhang, 2016

5._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3404 13
 Dapeng Zhang, 2016

6._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3404 11
 Dapeng Zhang, 2016

7._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3404 9
 Dapeng Zhang, 2016

8._ICS_95

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3404 5
 Dapeng Zhang, 2016

9._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3404 3
 Dapeng Zhang, 2016

10._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3404 1
 Dapeng Zhang, 2016

11._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3403 14
 Dapeng Zhang, 2016

12._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3403 10
 Dapeng Zhang, 2016

13._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3403 7
 Dapeng Zhang, 2016

14._ICS_95

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3403 5
 Dapeng Zhang, 2016

15._ICS_95

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3403 1
 Dapeng Zhang, 2016

16._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2102 3 > FP
 Dapeng Zhang, 2016

17._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2102 2 > FP
 Dapeng Zhang, 2016

18._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2102 16
 Dapeng Zhang, 2016

19._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 2102 9
 Dapeng Zhang, 2016

20._ICS_95

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1705 6
 Dapeng Zhang, 2016

21._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1705 5
 Dapeng Zhang, 2016

22._ICS_95

96.2 %
13 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1705 4
 Dapeng Zhang, 2016

23._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1705 3
 Dapeng Zhang, 2016

24._ICS_95

96.2 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1705 2
 Dapeng Zhang, 2016

25._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

27._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

29._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

30._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._ICS_95 GC-02-2-1-02

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

32._ICS_95 GC-02-2-1-02

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

33._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

35._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._ICS_95 GC-02-002-1-02

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

38._ICS_95 GC-02-002-1-02

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

39._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

40._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

41._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

42._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

43._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

44._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

45._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

46._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

47._ICS_95 GC-02-2-1-02

96 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL13
Notes: PL13 FP13
 Mars, 2018

48._ICS_95 GC-01-128-7-05

96 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

49._ICS_95

95.8 %
12 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1705 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

50._ICS_95

95.8 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3403 12
 Dapeng Zhang, 2016

51._ICS_95

95.8 %
12 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2102 13 > F
 Dapeng Zhang, 2016

52._ICS_95 GC-02-2-1-02

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL1
Notes: PL1 FP4
 Mars, 2018

53._ICS_95 GC-03-039-4-03

95.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

54._ICS_95

95.5 %
11 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 2102 1 > FP
 Dapeng Zhang, 2016

55._ICS_95 RUQ_1144

92.9 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

56._ICS_95

92.3 %
13 shared markers

 View  View all  Clone  Any
Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

57._ICS_95

92.3 %
13 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P26 56
 Dapeng Zhang, 2016

58._ICS_95

92.3 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Row 10 C0204 2A
 Dapeng Zhang, 2016

59._ICS_95

88.5 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block1
 Dapeng Zhang, 2016

60._ICS_95 GC-02-002-1-2

63.6 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: 13 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

61._ICS_95 RUQ_1144

63.6 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

62._ICS_95 MITC-000342

63.6 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

63._ICS_95 ICS_95_Fld#_13_Plt#_1

63.6 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 13, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144