SNP Profiles of ICS43   View Data

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 Key

 1234567891011121314
_Input profile
CCCTATAGCTCCCTCCCGCCAGGTAGCT
1._RUQ_144
GGCTATAGCT__CCCGGG___CT
2._RUQ_144
GG___CT_CTCC_GG____
3._ICS_43
GG___CT_CTCC_GG____
4._RUQ_144
GG________GG___CT
5._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
6._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
7._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
8._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
9._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
10._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
11._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
12._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
13._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
14._ICS_43
CC___CC_CCCC_GG____
15._ICS_43
CC___CC_CCCC_GG____
16._ICS_43
CC___CC_CCCC_GG____
17._ICS_43
CC___CC_CCCC_GG____
18._ICS_43
CC___CC_CCCC_GG____
19._ICS_43
CC___CC_CCCC_GG____
20._ICS_43
CC___CC_CCCC_GG____
21._ICS_43
CC___CC_CCCC_GG____
22._ICS_43
CC___CC_CCCC_GG____
23._GC-01-051-3-06
CCCCTTGGCCCCCCCCCCGG_GGAACC
24._RUQ_144
CCAG_AGAG_AGGG_CCAGAC_AG
25._ICS_43_Fld#_164_Plt#_1
CCAG_AGAG_AGGG_CCAGAC_AG
26._ICS_43
CC___CC_CCCC_GG____
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_Input profile
AACCCCCTAAAGGGCGACGGCTACX_XX_X
1._RUQ_144
AACCCC_AAAGGGCGACGGCTACX_XX_X
2._RUQ_144
AACC__AA_GGCGAC_CTACX_XX_X
3._ICS_43
AACC__AA_GG_AC_CTACX_XX_X
4._RUQ_144
AACC____GG____ACX_XX_X
5._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
6._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
7._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
8._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
9._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
10._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
11._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
12._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
13._GC-01-051-3-06
CCCCCCTTAAGGGGCCAAGGTTAAX_XX_X
14._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
15._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
16._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
17._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
18._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
19._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
20._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
21._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
22._ICS_43
CCCC__AA_GGCCAA_TTAAX_XX_X
23._GC-01-051-3-06
CCCCCCTTAAGG_CCAAGGTTAAX_XX_X
24._RUQ_144
AACCGGAGAAAGGGCGACGGAGACX_XX_X
25._ICS_43_Fld#_164_Plt#_1
AACCGGAGAAAGGGCGACGGAGACX_XX_X
26._ICS_43
CCCC__AA__CCAA_TTAAX_XX_X

Input profile: ICS_43 ICS43

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._ICS_43 RUQ_144

90 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._ICS_43 RUQ_144

84.6 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._ICS_43

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block3
 Dapeng Zhang, 2016

4._ICS_43 RUQ_144

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

5._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

6._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

7._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

8._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

9._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

13._ICS_43 GC-01-051-3-06

62 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

15._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 2
 Dapeng Zhang, 2016

17._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 4
 Dapeng Zhang, 2016

18._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 12
 Dapeng Zhang, 2016

19._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 14
 Dapeng Zhang, 2016

20._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 15
 Dapeng Zhang, 2016

21._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 8 > FP
 Dapeng Zhang, 2016

22._ICS_43

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 9 > FP
 Dapeng Zhang, 2016

23._ICS_43 GC-01-051-3-06

60.4 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

24._ICS_43 RUQ_144

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

25._ICS_43 ICS_43_Fld#_164_Plt#_1

59.1 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 164, Tree: 1
 Mars, 2018

26._ICS_43

58.3 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1306 3
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144