SNP Profiles of GU261/P   View Data

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 Key

 1234567891011121314
_Input profile
GGCCTTGGCCCCCCCCGGCCGGGGAACC
1._RUQ_1370
CCCCTTGGCC__CCCCGG___CC
2._GU_261_/P
CC___CC_CCCC_GG____
3._GU_261_/P
CC___CC_CCCC_GG____
4._GU_261_/P
CC___CC_CCCC_GG____
5._GU_261_/P
CC___CC_CCCC_GG____
6._GU_261_/P
CC___CC_CCCC_GG____
7._GU_261_/P
CC___CC_CCCC_GG____
8._GU_261_/P
CC___CC_CCCC_GG____
9._GU_261_/P
CC___CC_CCCC_GG____
10._GU_261_/P
CC___CC_CCCC_GG____
11._GU_261_/P
CC___CC_CCCC_GG____
12._GU_261_/P
CC___CC_CCCC_GG____
13._GU_261_/P
CC___CC_CCCC_GG____
14._GU_261_/P
CC___CC_CCCC_GG____
15._GU_261_/P
CC___CC_CCCC_GG____
16._GU_261_/P
CC___CC_CCCC_GG____
17._GU_261_/P
CC___CC_CCCC_GG____
18._GU_261_/P
CC___CC_CCCC_GG____
19._GU_261_/P
CC___CC_CCCC_GG____
20._GU_261_/P
CC___CC_CCCC_GG____
21._GU_261_/P
CC___CC_CCCC_GG____
22._GU_261_/P
CC___CC_CCCC_GG____
23._GU_261_/P
CC___CC_CCCC_GG____
24._GU_261_/P
CC___CC_CCCC_GG____
25._GU_261_/P
CC___CC_CCCC_GG____
26._GU_261_/P
CC___CC_CCCC_GG____
27._GU_261_/P
CC___CC_CCCC_GG____
28._GU_261_/P
CC___CC_CCCC_GG____
29._GU_261_/P
CC___CC_CCCC_GG____
30._RUQ_1370
CC___CC_CCCC_GG____
31._GU_261_/P
CC___CC_CCCC_GG____
32._GU_261_/P
CC___CC_CCCC_GG____
33._GU_261_/P
CC___CC__CC_GG____
34._GU_261_/P
CC___CC_CCCC_GG____
35._GU_261_/P
CC___CC_CC__GG____
36._RUQ_1370
CC________GG___CC
37._GU_261_/P
CC___CC_CCCC_GG____
38._RUQ_1370
GGGG_GGGG_GGGG_CCGGCC_GG
 151617181920212223242526  
_Input profile
ACCCCCTTAAGGGGGGAAGGTTAAX_XX_X
1._RUQ_1370
ACCCCC_AAGGGGCCAAGGTTAAX_XX_X
2._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
3._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
4._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
5._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
6._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
7._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
8._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
9._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
10._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
11._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
12._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
13._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
14._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
15._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
16._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
17._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
18._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
19._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
20._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
21._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
22._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
23._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
24._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
25._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
26._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
27._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
28._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
29._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
30._RUQ_1370
ACCC__AA_GGCCAA_TTAAX_XX_X
31._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
32._GU_261_/P
ACCC__AA_GGCCAA__AAX_XX_X
33._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
34._GU_261_/P
ACCC__AA_GGCCAA__AAX_XX_X
35._GU_261_/P
ACCC__AA_GGCCAA_TTAAX_XX_X
36._RUQ_1370
ACCC____GG____AAX_XX_X
37._GU_261_/P
ACCC__AA_GGCCAC__AAX_XX_X
38._RUQ_1370
ACCCGGAAAAGGGGGGAAGGAAAAX_XX_X

Input profile: GU_261_/P RUQ_1370

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._GU_261_/P RUQ_1370

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 16
 Dapeng Zhang, 2016

3._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 5
 Dapeng Zhang, 2016

4._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 4
 Dapeng Zhang, 2016

5._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 3
 Dapeng Zhang, 2016

6._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 2 > FP
 Dapeng Zhang, 2016

7._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 14 > F
 Dapeng Zhang, 2016

8._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 1 > FP
 Dapeng Zhang, 2016

9._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 15
 Dapeng Zhang, 2016

10._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 12
 Dapeng Zhang, 2016

11._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 10
 Dapeng Zhang, 2016

12._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 9
 Dapeng Zhang, 2016

13._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 8
 Dapeng Zhang, 2016

14._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 6
 Dapeng Zhang, 2016

15._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 5
 Dapeng Zhang, 2016

16._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 9
 Dapeng Zhang, 2016

17._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 3
 Dapeng Zhang, 2016

18._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 21
 Dapeng Zhang, 2016

19._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 20
 Dapeng Zhang, 2016

20._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 19
 Dapeng Zhang, 2016

21._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 18
 Dapeng Zhang, 2016

22._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 17
 Dapeng Zhang, 2016

23._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 16
 Dapeng Zhang, 2016

24._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 15
 Dapeng Zhang, 2016

25._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 14
 Dapeng Zhang, 2016

26._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 13
 Dapeng Zhang, 2016

27._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 12
 Dapeng Zhang, 2016

28._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 11
 Dapeng Zhang, 2016

29._GU_261_/P

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 10
 Dapeng Zhang, 2016

30._GU_261_/P RUQ_1370

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._GU_261_/P

76.9 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: CAMPUS 1 A X2 Y16
 Dapeng Zhang, 2016

32._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 6
 Dapeng Zhang, 2016

33._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 11 > F
 Dapeng Zhang, 2016

34._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 8
 Dapeng Zhang, 2016

35._GU_261_/P

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1408 7
 Dapeng Zhang, 2016

36._GU_261_/P RUQ_1370

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

37._GU_261_/P

70.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8112 2
 Dapeng Zhang, 2016

38._GU_261_/P RUQ_1370

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144