SNP Profiles of SCA6   View Data

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 Key

 1234567891011121314
_Input profile
GGCCTTGGCTCGCCTTCGGGAATTAGCC
1._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
2._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
3._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
4._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
5._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
6._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
7._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
8._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
9._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
10._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
11._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
12._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
13._GC-01-026-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
14._GC-01-26-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
15._GC-01-26-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
16._GC-01-26-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
17._GC-01-26-2-03
CCCCTTGGCTCGCCTTCGCCAATTAGCC
18._RUQ_234
CCCCTTGGCT__TTCGCC___CC
19._SCA_6
CC___CT_CCTT_CC____
20._SCA_6
CC___CT_CCTT_CC____
21._SCA_6
CC___CT_CCTT_CC____
22._SCA_6
CC___CT_CCTT_CC____
23._SCA_6
CC___CT_CCTT_CC____
24._SCA_6
CC___CT_CCTT_CC____
25._SCA_6
CC___CT_CCTT_CC____
26._SCA_6
CC___CT_CCTT_CC____
27._SCA_6
CC___CT_CCTT_CC____
28._SCA_6
CC___CT_CCTT_CC____
29._SCA_6
CC___CT_CCTT_CC____
30._SCA_6
CC___CT_CCTT_CC____
31._SCA_6
CC___CT_CCTT_CC____
32._SCA_6
CC___CT_CCTT_CC____
33._SCA_6
CC___CT_CCTT_CC____
34._SCA_6
CC___CT_CCTT_CC____
35._SCA_6
CC___CT_CCTT_CC____
36._SCA_6
CC___CT_CCTT_CC____
37._RUQ_234
CC___CT_CCTT_CC____
38._SCA_6
CC___CT_CCTT_CC____
39._SCA_6
CC___CT_CCTT_CC____
40._SCA_6
CC___CT_CCTT_CC____
41._SCA_6
CC___CT_CCTT_CC____
42._SCA_6
CC___CC_CCTT_CC____
43._RUQ_234B
CC________CC___CC
44._RUQ_234
GGGG_GGAG_GGAA_GGAAAA_GG
45._MITC-000343
GGGG_GGAG_GGAA_GGAAAA_GG
46._MITC-000344
GGGG_GGAG_GGAA_GGAAAA_GG
47._MITC-000345
GGGG_GGAG_GGAA_GGAAAA_GG
48._MITC-000347
GGGG_GGAG_GGAA_GGAAAA_GG
49._MITC-000348
GGGG_GGAG_GGAA_GGAAAA_GG
50._MITC-000349
GGGG_GGAG_GGAA_GGAAAA_GG
51._MITC-000376
GGGG_GGAG_GGAA_GGAAAA_GG
52._MITC-000452
GGGG_GGAG_GGAA_GGAAAA_GG
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
CGAG_AGGG_AGAG_CGAGAA_AG
54._SCA_6_Fld#_16_Plt#_1
CGAG_AGGG_AGAG_CGAGAA_AG
 151617181920212223242526  
_Input profile
CCCGGGCCAAGGAAGGCCGGTTCCX_XX_X
1._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
2._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
3._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
4._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
5._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
6._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
7._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
8._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
9._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
10._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
11._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
12._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
13._GC-01-026-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
14._GC-01-26-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
15._GC-01-26-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
16._GC-01-26-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
17._GC-01-26-2-03
CCCGGGCCAAGGAACCCCGGTTACX_XX_X
18._RUQ_234
CCCGGG_AAGGAACCCCGGTTCCX_XX_X
19._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
20._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
21._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
22._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
23._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
24._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
25._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
26._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
27._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
28._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
29._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
30._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
31._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
32._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
33._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
34._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
35._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
36._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
37._RUQ_234
CCCG__AA_AACCCC_TTACX_XX_X
38._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
39._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
40._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
41._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
42._SCA_6
CCCG__AA_AACCCC_TTACX_XX_X
43._RUQ_234B
CCCG____AA____ACX_XX_X
44._RUQ_234
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
45._MITC-000343
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
46._MITC-000344
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
47._MITC-000345
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
48._MITC-000347
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
49._MITC-000348
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
50._MITC-000349
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
51._MITC-000376
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
52._MITC-000452
CCCGCCGGAAGGAAGGCCGGAAACX_XX_X
53._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
ACCGCGAGAAGGAAGGACGGAGAAX_XX_X
54._SCA_6_Fld#_16_Plt#_1
ACCGCGAGAAGGAAGGACGGAGAAX_XX_X

Input profile: SCA_6 SCA6

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

4._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

5._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

6._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

7._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

9._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

11._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._SCA_6 GC-01-026-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

14._SCA_6 GC-01-26-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

15._SCA_6 GC-01-26-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

16._SCA_6 GC-01-26-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

17._SCA_6 GC-01-26-2-03

86.5 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

18._SCA_6 RUQ_234

85 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

20._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

21._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

22._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

23._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

24._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

25._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

26._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

27._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

28._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

29._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

30._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

31._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

32._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

33._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

34._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

35._SCA_6

73.1 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

36._SCA_6

73.1 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

37._SCA_6 RUQ_234

73.1 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

38._SCA_6

73.1 %
13 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

39._SCA_6

73.1 %
13 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

40._SCA_6

73.1 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

41._SCA_6

73.1 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

42._SCA_6

69.2 %
13 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

43._SCA_6 RUQ_234B

64.3 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

44._SCA_6 RUQ_234

56.8 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

45._SCA_6 MITC-000343

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

46._SCA_6 MITC-000344

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

47._SCA_6 MITC-000345

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

48._SCA_6 MITC-000347

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

49._SCA_6 MITC-000348

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

50._SCA_6 MITC-000349

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

51._SCA_6 MITC-000376

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

52._SCA_6 MITC-000452

56.8 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

53._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

43.2 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

54._SCA_6 SCA_6_Fld#_16_Plt#_1

43.2 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144