SNP Profiles of IMC67   View Data

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 Key

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_Input profile
CGCCTTGGCCCGCCCCGGCGGGGTAACC
1._GC-05-82-2-33
GGCCTTGGCCCGTTCTCCCC_TTGGCC
2._GC-05-82-2-33
GGCCTTGGCCCGTTCTCCCC_TTGGCC
3._RUQ_1056
GGCCTTGGCC__TTCCCC___CC
4._GC-05-082-2-33
GGCCTTGGCCCGTTCTCCCC_TTGGCC
5._GC-05-82-2-33
GGCCTTGGCCCGTTCTCCCC_TTGGCC
6._GC-05-82-2-33
GGCCTTGGCC_TTCTCCCC_TTGGCC
7._RUQ_1056
GG________CC___CC
8._IMC_67
GG___CC_TTCT_CC____
9._IMC_67
GG___CC_TTCT_CC____
10._IMC_67
GG___CC_TTCT_CC____
11._IMC_67
GG___CC_TTCT_CC____
12._IMC_67
GG___CC_TTCT_CC____
13._IMC_67
GG___CC_TTCT_CC____
14._IMC_67
GG___CC_TTCT_CC____
15._RUQ_1056
GG___CC_TTCT_CC____
16._IMC_67
GG___CC_TTCT_CC____
17._IMC_67
GG___CC_TTCT_CC____
18._IMC_67
GG___CC_TTCT_CC____
19._IMC_67_Fld#_152B_Plt#_4
GGGG_GGGG_AGAG_GGAGAA_GG
20._GC-05-82-2-33
CCGG_GGGG_AAAG_GGGGAA_GG
21._GC-05-82-2-33
CCGG_GGGG_AAAG_GGGGAA_GG
22._RUQ_1056
CCGG_GGGG_AAAG_GGGGAA_GG
23._IMC_67_Fld#_152A_Plt#_1
CCGG_GGGG_AAAG_GGGGAA_GG
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_Input profile
ACGGCCCTATGGAAGGACGGCTAAX_XX_X
1._GC-05-82-2-33
ACGGCCCT_GGAGCGACGGCTCCX_XX_X
2._GC-05-82-2-33
ACGGCCCT_GGAGCGACGGCTCCX_XX_X
3._RUQ_1056
ACCGCC_AAGGAGCGACGGCTCCX_XX_X
4._GC-05-082-2-33
ACGGCCCTAAGGAGCGACGGCTCCX_XX_X
5._GC-05-82-2-33
ACGGCCCTAAGGAGCGACGGCTCCX_XX_X
6._GC-05-82-2-33
ACGGCCCTAAGGAGCGACGGCTCCX_XX_X
7._RUQ_1056
ACGG____AG____CCX_XX_X
8._IMC_67
ACGG____AGCGAC_CTCCX_XX_X
9._IMC_67
ACGG____AGCGAC_CTCCX_XX_X
10._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
11._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
12._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
13._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
14._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
15._RUQ_1056
ACGG__AA_AGCGAC_CTCCX_XX_X
16._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
17._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
18._IMC_67
ACGG__AA_AGCGAC_CTCCX_XX_X
19._IMC_67_Fld#_152B_Plt#_4
ACGGCCGGAAGGGGGGCCGGAAACX_XX_X
20._GC-05-82-2-33
ACCGGGAGAAGGAGCGACGGAGCCX_XX_X
21._GC-05-82-2-33
ACCGGGAGAAGGAGCGACGGAGCCX_XX_X
22._RUQ_1056
ACCGGGAGAAGGAGCGACGGAGCCX_XX_X
23._IMC_67_Fld#_152A_Plt#_1
ACCGGGAGAAGGAGCGACGGAGCCX_XX_X

Input profile: IMC_67 IMC67

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._IMC_67 GC-05-82-2-33

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

2._IMC_67 GC-05-82-2-33

70.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

3._IMC_67 RUQ_1056

70 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._IMC_67 GC-05-082-2-33

70 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

5._IMC_67 GC-05-82-2-33

70 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

6._IMC_67 GC-05-82-2-33

68.8 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

7._IMC_67 RUQ_1056

64.3 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

8._IMC_67

62.5 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._IMC_67

62.5 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

10._IMC_67

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

11._IMC_67

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

12._IMC_67

61.5 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

13._IMC_67

61.5 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

14._IMC_67

61.5 %
13 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

15._IMC_67 RUQ_1056

61.5 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._IMC_67

61.5 %
13 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

17._IMC_67

61.5 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

18._IMC_67

61.5 %
13 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

19._IMC_67 IMC_67_Fld#_152B_Plt#_4

45.5 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

20._IMC_67 GC-05-82-2-33

40.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

21._IMC_67 GC-05-82-2-33

40.9 %
22 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

22._IMC_67 RUQ_1056

40.9 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152A_Plt#_1

40.9 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144