SNP Profiles of "IMC 54"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-04-018-1-18
______GGGGTT___GG______CCTTCCTT___
2. _GC-04-018-1-18
______GGGGTT___GG______CCTTCCTT___
3. _GC-04-018-1-18
______GGGGTT___GG______CCTTCCTT___
4. _GC-04-018-1-18
______GGGGTT___GG______CCTTCCTT___
5. _GC-04-018-1-18
______GGGGTT___GG______CCTTCCTT___
6. _GC-04-18-1-18
______GGCCTT___GG______GGAACCAA___
7. _4118_7
______GG___TT___________________________
8. _4118_3_>_FP
______GG___TT___________________________
9. _4118_4_>_FP
______GG___TT___________________________
10. _4118_5_>_FP
______GG___TT___________________________
11. _4118_6_>_FP
______GG___TT___________________________
12. _RUQ_11
TTCC_________TT___CCGG____________TT
13. _RUQ_11
______________________________TTCC______
14. _RUQ_11
______GG___TT___________________________
15. _Marper_D311
______CG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-04-018-1-18
___CCGTCTTTGG______AA___CCAGGGTT
2. _GC-04-018-1-18
___CCGTCTTTGG______AA___CCAGGGTT
3. _GC-04-018-1-18
___CCGTCTTTGG______AA___CCAGGGTT
4. _GC-04-018-1-18
___CCGTCTTTGG______AA___CCAGGGTT
5. _GC-04-018-1-18
___CCGTCTTTGG______AA___CCAGGGTT
6. _GC-04-18-1-18
___CCACAGAAGG______AC___GGAGGGAA
7. _4118_7
___CCGTCT____________AA___CCAG___TT
8. _4118_3_>_FP
___CCGTCT____________AA___CCAG___TT
9. _4118_4_>_FP
___CCGTCT____________AA___CCAG___TT
10. _4118_5_>_FP
___CCGTCT____________AA___CCAG___TT
11. _4118_6_>_FP
___CCGTCT____________AA___CCAG___TT
12. _RUQ_11
ATCC____________CTAG___GT___AG______
13. _RUQ_11
___CCGTCT___GG______AC___CCAG___TT
14. _RUQ_11
______GTCT____________AC___CCAG___CT
15. _Marper_D311
___CCGT_______________AC______GG___CT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-04-018-1-18
______AAAG___GGAACCGG___GGAT___AA
2. _GC-04-018-1-18
______AAAG___GGAACCGG___GGATCCAA
3. _GC-04-018-1-18
______AAAG___GGAACCGG___GGATCCAA
4. _GC-04-018-1-18
______AAAG___GGAACCGG___GGATCCAA
5. _GC-04-018-1-18
______AAAG___GGAACCGG___GGATCCAA
6. _GC-04-18-1-18
______TTAG___GGAAGGGG___GGATGG___
7. _4118_7
__________________AA_________GG______AA
8. _4118_3_>_FP
__________________AA_________GG______AA
9. _4118_4_>_FP
__________________AA_________GG______AA
10. _4118_5_>_FP
__________________AA_________GG______AA
11. _4118_6_>_FP
__________________AA_________GG______AA
12. _RUQ_11
TTAC___AGAC____________CC____________
13. _RUQ_11
_________AG___GGAA_______________CCAA
14. _RUQ_11
__________________AA_________AG______AA
15. _Marper_D311
__________________AT_________AG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-04-018-1-18
______AA___CCCT___AGGTGGGG___AACC
2. _GC-04-018-1-18
______AA___CCCT___AGGTGGGG___AACC
3. _GC-04-018-1-18
______AA___CCCT___AGGTGGGG___AACC
4. _GC-04-018-1-18
______AA___CCCT___AGGTGGGG___AACC
5. _GC-04-018-1-18
______AA___CCCT___AGGTGGGG___AACC
6. _GC-04-18-1-18
AG___AA___CC______AGACGGGG___AAGG
7. _4118_7
____________CCCT______GT___GG___AA___
8. _4118_3_>_FP
____________CCCT______GT___GG___AA___
9. _4118_4_>_FP
____________CCCT______GT___GG___AA___
10. _4118_5_>_FP
____________CCCT______GT___GG___AA___
11. _4118_6_>_FP
____________CCCT______GT___GG___AA___
12. _RUQ_11
___AA___CCCC___AG_________GGATAACC
13. _RUQ_11
____________CCCT______GT___GG___AACC
14. _RUQ_11
____________CCCT______GT___GG___AA___
15. _Marper_D311
____________CCCC______GG___GG___AC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-04-018-1-18
AGCC_________AAAA___AATTCCGGGG___
2. _GC-04-018-1-18
AGCC_________AAAA___AATTCCGGGG___
3. _GC-04-018-1-18
AGCC_________AAAA___AATTCCGGGG___
4. _GC-04-018-1-18
AGCC_________AAAA___AATTCCGGGG___
5. _GC-04-018-1-18
AGCC_________AAAA___AATTCCGGGG___
6. _GC-04-18-1-18
___GG____________AA___AA______CCGG___
7. _4118_7
___CC_________AA_______________GG______
8. _4118_3_>_FP
___CC_________AA_______________GG______
9. _4118_4_>_FP
___CC_________AA_______________GG______
10. _4118_5_>_FP
___CC_________AA_______________GG______
11. _4118_6_>_FP
___CC_________AA_______________GG______
12. _RUQ_11
______CTAGCCAA___CG______TTGGGGCT
13. _RUQ_11
___CC________________________TTGGGG___
14. _RUQ_11
___CC_________AA_______________GG______
15. _Marper_D311
___CC_________AA_______________GT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-04-018-1-18
TTTTTT___AC___GG___CCCCCTCCGGCC
2. _GC-04-018-1-18
TTTTTT___AC___GG___CCCCCTCCGGCC
3. _GC-04-018-1-18
TTTTTT___AC___GG___CCCCCTCCGGCC
4. _GC-04-018-1-18
TTTTTT___AC___GG___CCCCCTCCGGCC
5. _GC-04-018-1-18
TTTTTT___AC___GG___CCCCCTCCGGCC
6. _GC-04-18-1-18
AAAAAA___AC___CCGGGG___AGGGGGGG
7. _4118_7
________________________CC___CT______CC
8. _4118_3_>_FP
________________________CC___CT______CC
9. _4118_4_>_FP
________________________CC___CT______CC
10. _4118_5_>_FP
________________________CC___CT______CC
11. _4118_6_>_FP
________________________CC___CT______CC
12. _RUQ_11
_________TTACAATT___CC_________GG___
13. _RUQ_11
______TT___AC_________CCCCTT___-___
14. _RUQ_11
________________________CC___CT______CC
15. _Marper_D311
________________________CC___CT______CT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-04-018-1-18
GGCC___ATTTAACC______TTCG___CTGG
2. _GC-04-018-1-18
GGCC___ATTTAACC______TTCG___CTGG
3. _GC-04-018-1-18
GGCC___ATTTAACC______TTCG___CTGG
4. _GC-04-018-1-18
GGCC___ATTTAACC______TTCG___CTGG
5. _GC-04-018-1-18
GGCC___ATTTAACC______TTCG___CTGG
6. _GC-04-18-1-18
GGGG___ATAAAA_________AA______AGGG
7. _4118_7
GG______ATTTAA__________________CTGG
8. _4118_3_>_FP
GG______ATTTAA__________________CTGG
9. _4118_4_>_FP
GG______ATTTAA__________________CTGG
10. _4118_5_>_FP
GG______ATTTAA__________________CTGG
11. _4118_6_>_FP
GG______ATTTAA__________________CTGG
12. _RUQ_11
______CG______AACCCCAA______CC___GG
13. _RUQ_11
_______________AACC_______________CT___
14. _RUQ_11
GG______ATTTAA__________________CTGG
15. _Marper_D311
GG______TTTTAA__________________CTGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-04-018-1-18
GGAACCGG___TTCCTTCTCCGG______CC
2. _GC-04-018-1-18
GGAACCGG___TTCCTTCTCCGG______CC
3. _GC-04-018-1-18
GGAACCGG___TTCCTTCTCCGG______CC
4. _GC-04-018-1-18
GGAACCGG___TTCCTTCTCCGG______CC
5. _GC-04-018-1-18
GGAACCGG___TTCCTTCTCCGG______CC
6. _GC-04-18-1-18
CCAAGGGG_________AAAG___CC_________
7. _4118_7
___AA____________CC______CC____________
8. _4118_3_>_FP
___AA____________CC______CC____________
9. _4118_4_>_FP
___AA____________CC______CC____________
10. _4118_5_>_FP
___AA____________CC______CC____________
11. _4118_6_>_FP
___AA____________CC______CC____________
12. _RUQ_11
____________CT___CC____________GGAA___
13. _RUQ_11
GG______GG___TT________________________
14. _RUQ_11
___AA____________CC______CC____________
15. _Marper_D311
___AT_____________________CT____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-04-018-1-18
TTTT______TTCCGG______TTCCTTCGAG
2. _GC-04-018-1-18
TTTT______TTCCGG______TTCCTTCGAG
3. _GC-04-018-1-18
TTTT______TTCCGG______TTCCTTCGAG
4. _GC-04-018-1-18
TTTT______TTCCGG______TTCCTTCGAG
5. _GC-04-018-1-18
TTTT______TTCCGG______TTCCTTCGAG
6. _GC-04-18-1-18
AAAA______AGCCGG______AAGGAACGAG
7. _4118_7
TTTT_________CC_________TT___TTCGAG
8. _4118_3_>_FP
TTTT_________CC_________TT___TTCGAG
9. _4118_4_>_FP
TTTT_________CC_________TT___TTCGAG
10. _4118_5_>_FP
TTTT_________CC_________TT___TTCGAG
11. _4118_6_>_FP
TTTT_________CC_________TT___TTCGAG
12. _RUQ_11
TT___GGAT_________AAAG_________CG___
13. _RUQ_11
TT_________CT_______________CCTTCGAG
14. _RUQ_11
TTTT_________CC_________TT______CGAG
15. _Marper_D311
GTTT_________CC_______________TTCGGG
 127 128 129 130 131 132 133 134       
1. _GC-04-018-1-18
CC______ACAAAAAAACX_XX_XX_XX_XX_XX_X
2. _GC-04-018-1-18
CC______ACAAAAAAACX_XX_XX_XX_XX_XX_X
3. _GC-04-018-1-18
CC______ACAAAAAAACX_XX_XX_XX_XX_XX_X
4. _GC-04-018-1-18
CC______ACAAAAAAACX_XX_XX_XX_XX_XX_X
5. _GC-04-018-1-18
CC______ACAAAAAAACX_XX_XX_XX_XX_XX_X
6. _GC-04-18-1-18
GG______AC___AAAAACX_XX_XX_XX_XX_XX_X
7. _4118_7
CC_____________________X_XX_XX_XX_XX_XX_X
8. _4118_3_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
9. _4118_4_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
10. _4118_5_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
11. _4118_6_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
12. _RUQ_11
___TTAT_______________X_XX_XX_XX_XX_XX_X
13. _RUQ_11
________________________X_XX_XX_XX_XX_XX_X
14. _RUQ_11
CC_____________________X_XX_XX_XX_XX_XX_X
15. _Marper_D311
________________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._IMC_54 GC-04-018-1-18
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018
2._IMC_54 GC-04-018-1-18
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018
3._IMC_54 GC-04-018-1-18
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018
4._IMC_54 GC-04-018-1-18
Location: Tree: 6
Notes: 6 > FP1
 Mars, 2018
5._IMC_54 GC-04-018-1-18
Location: Tree: 7
Notes: 7
 Mars, 2018
6._IMC_54 GC-04-18-1-18
Location: Field: 4, Block: 1, Rep: 18, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
7._IMC_54
Location: 4118 7
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
8._IMC_54
Location: 4118 3 > FP
 Dapeng Zhang, 2016
9._IMC_54
Location: 4118 4 > FP
 Dapeng Zhang, 2016
10._IMC_54
Location: 4118 5 > FP
 Dapeng Zhang, 2016
11._IMC_54
Location: 4118 6 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

12._IMC_54 RUQ 11
 Lambert Motilal, 2023
13._IMC_54 RUQ 11
 Dapeng Zhang, 2014
14._IMC_54 RUQ 11
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

15._IMC_54
Location: Marper D311
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133