SNP Profiles of IMC-54 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AA	AA	AC	AA	AG	GG	CC	AA	GG	GG	AA	AG	CC
1._RUQ_11	_	_	_	_	_	_	GG	_	_	_	_	_	_	_
2._RUQ_11	_	_	_	_	_	CT	GG	_	AA	_	_	_	_	_
3._IMC_54	_	_	_	_	_	CT	GG	_	AA	_	_	_	_	_
4._IMC_54	_	_	_	_	_	CT	GG	_	AA	_	_	_	_	_
5._IMC_54	_	_	_	_	_	CT	GG	_	AA	_	_	_	_	_
6._IMC_54	_	_	_	_	_	CT	GG	_	AA	_	_	_	_	_
7._IMC_54	_	_	_	_	_	CT	GG	_	AA	_	_	_	_	_
8._GC-04-018-1-18	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
9._GC-04-018-1-18	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
10._GC-04-018-1-18	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
11._GC-04-018-1-18	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
12._GC-04-018-1-18	AC	AA	AA	AC	TT	CT	GG	GG	AA	CC	GG	TT	CT	GG
13._RUQ_11	_	_	_	_	_	CT	_	GG	_	_	GG	_	_	_
14._IMC_54	_	_	_	_	_	CT	GG	_	AT	_	_	_	_	_

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AG	CC	GG	AA	GG	CC	AA	CG	AG	AC	AG
1._RUQ_11	_	TT	_	_	_	_	_	_	CC	_	CG	_	_	_
2._RUQ_11	_	TT	TT	_	CC	_	TT	_	_	_	CG	AG	GT	CT
3._IMC_54	_	TT	TT	_	CC	_	TT	_	CC	TT	CG	AG	GT	CT
4._IMC_54	_	TT	TT	_	CC	_	TT	_	CC	TT	CG	AG	GT	CT
5._IMC_54	_	TT	TT	_	CC	_	TT	_	CC	TT	CG	AG	GT	CT
6._IMC_54	_	TT	TT	_	CC	_	TT	_	CC	TT	CG	AG	GT	CT
7._IMC_54	_	TT	TT	_	CC	_	TT	_	CC	TT	CG	AG	GT	CT
8._GC-04-018-1-18	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
9._GC-04-018-1-18	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
10._GC-04-018-1-18	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
11._GC-04-018-1-18	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
12._GC-04-018-1-18	TT	TT	TT	TT	CC	GG	TT	CC	CC	TT	CG	AG	GT	CT
13._RUQ_11	_	TT	_	CT	_	_	_	CC	CC	TT	CG	AG	GT	CT
14._IMC_54	_	GT	TT	_	CC	_	_	_	CC	TT	CG	GG	GT	_

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AA	GG	AC	GG	AG	GG	AA	GG	CC	TT	TT	AG	GG
1._RUQ_11	_	_	_	_	_	AG	_	_	_	_	_	_	AG	_
2._RUQ_11	CC	_	_	AC	CC	AG	_	CT	GG	_	_	TT	_	_
3._IMC_54	CC	_	_	AA	CC	AG	_	TT	GG	_	_	TT	_	_
4._IMC_54	CC	_	_	AA	CC	AG	_	TT	GG	_	_	TT	_	_
5._IMC_54	CC	_	_	AA	CC	AG	_	TT	GG	_	_	TT	_	_
6._IMC_54	CC	_	_	AA	CC	AG	_	TT	GG	_	_	TT	_	_
7._IMC_54	CC	_	_	AA	CC	AG	_	TT	GG	_	_	TT	_	_
8._GC-04-018-1-18	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
9._GC-04-018-1-18	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
10._GC-04-018-1-18	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
11._GC-04-018-1-18	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
12._GC-04-018-1-18	CC	TT	GG	AA	CC	AG	GG	TT	GG	GG	AA	TT	AG	GG
13._RUQ_11	_	_	GG	AC	CC	AG	_	TT	_	_	_	_	AG	GG
14._IMC_54	_	_	_	AC	_	GG	_	CT	CG	_	_	AT	_	_

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AA	GG	GG	GG	GG	AT	GG	AG	AA	CC	AG	AC	GG	GG
1._RUQ_11	_	_	_	_	_	_	_	_	_	CC	_	_	_	GG
2._RUQ_11	AA	_	_	_	AG	_	_	_	_	CC	_	GT	_	GG
3._IMC_54	AA	_	_	_	GG	_	_	_	_	CC	_	GT	_	GG
4._IMC_54	AA	_	_	_	GG	_	_	_	_	CC	_	GT	_	GG
5._IMC_54	AA	_	_	_	GG	_	_	_	_	CC	_	GT	_	GG
6._IMC_54	AA	_	_	_	GG	_	_	_	_	CC	_	GT	_	GG
7._IMC_54	AA	_	_	_	GG	_	_	_	_	CC	_	GT	_	GG
8._GC-04-018-1-18	AA	CC	GG	GG	GG	AT	_	_	AA	CC	AG	GT	GG	GG
9._GC-04-018-1-18	AA	CC	GG	GG	GG	AT	CC	_	AA	CC	AG	GT	GG	GG
10._GC-04-018-1-18	AA	CC	GG	GG	GG	AT	CC	_	AA	CC	AG	GT	GG	GG
11._GC-04-018-1-18	AA	CC	GG	GG	GG	AT	CC	_	AA	CC	AG	GT	GG	GG
12._GC-04-018-1-18	AA	CC	GG	GG	GG	AT	CC	_	AA	CC	AG	GT	GG	GG
13._RUQ_11	AA	_	_	_	_	_	CC	_	_	CC	_	GT	_	GG
14._IMC_54	AT	_	_	_	AG	_	_	_	_	CC	_	GG	_	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AA	GG	GG	GG	AA	AA	CC	GG	AA	AA	AA	AA	AC	CC
1._RUQ_11	AA	_	CC	_	_	_	GG	GG	_	_	_	_	AC	TT
2._RUQ_11	AA	_	_	CC	_	_	GG	_	_	_	_	_	_	_
3._IMC_54	AA	_	_	CC	_	_	GG	_	_	_	_	_	_	_
4._IMC_54	AA	_	_	CC	_	_	GG	_	_	_	_	_	_	_
5._IMC_54	AA	_	_	CC	_	_	GG	_	_	_	_	_	_	_
6._IMC_54	AA	_	_	CC	_	_	GG	_	_	_	_	_	_	_
7._IMC_54	AA	_	_	CC	_	_	GG	_	_	_	_	_	_	_
8._GC-04-018-1-18	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
9._GC-04-018-1-18	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
10._GC-04-018-1-18	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
11._GC-04-018-1-18	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
12._GC-04-018-1-18	AA	CC	CC	CC	AA	AA	GG	GG	TT	TT	TT	TT	AC	GG
13._RUQ_11	AA	_	CC	CC	_	_	GG	GG	TT	_	_	TT	AC	_
14._IMC_54	AC	_	_	CC	_	_	GT	_	_	_	_	_	_	_

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	GG	GG	AG	GG	GG	CC	GG	GG	GG	AT	AA	AA	X_X	X_X
1._RUQ_11	_	CC	_	_	GG	_	_	_	_	_	_	AA	X_X	X_X
2._RUQ_11	_	CC	CT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
3._IMC_54	_	CC	CT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
4._IMC_54	_	CC	CT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
5._IMC_54	_	CC	CT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
6._IMC_54	_	CC	CT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
7._IMC_54	_	CC	CT	_	_	_	CC	GG	_	AT	TT	AA	X_X	X_X
8._GC-04-018-1-18	_	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
9._GC-04-018-1-18	_	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
10._GC-04-018-1-18	_	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
11._GC-04-018-1-18	_	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
12._GC-04-018-1-18	_	CC	CT	CC	GG	CC	CC	GG	CC	AT	TT	AA	X_X	X_X
13._RUQ_11	_	CC	TT	_	-	CC	_	_	_	_	_	AA	X_X	X_X
14._IMC_54	_	CC	CT	_	_	_	CT	GG	_	TT	TT	AA	X_X	X_X

Input profile: IMC_54 GC-04-18-1-18

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

1._IMC_54 RUQ_11

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._IMC_54 RUQ_11

50 %
33 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._IMC_54

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

4._IMC_54

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

5._IMC_54

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

6._IMC_54

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

7._IMC_54

50 %
35 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._IMC_54 GC-04-018-1-18

50 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

9._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

10._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

11._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

12._IMC_54 GC-04-018-1-18

49.4 %
80 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

13._IMC_54 RUQ_11

47.2 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

14._IMC_54

43.5 %
31 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D311

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998