SNP Profiles of IMC-54 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	CC	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
1._GC-04-018-1-18	AA	CC	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
2._GC-04-018-1-18	AA	CC	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
3._GC-04-018-1-18	AA	CC	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
4._GC-04-018-1-18	AA	CC	CT	AA	GG	GG	CC	CC	CT	CC	GG	TT	CT	TT
5._IMC_54	AA	CC	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
6._IMC_54	AA	CC	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
7._IMC_54	AA	CC	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
8._IMC_54	AA	CC	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
9._IMC_54	AA	CC	CT	AA	_	_	_	_	CT	CC	GG	_	CT	_
10._RUQ_11	AA	CC	CT	AA	_	_	_	_	CT	CC	AG	_	CT	_
11._RUQ_11	_	_	CT	AA	_	_	TT	_	CT	_	_	TT	TT	_
12._RUQ_11	_	_	_	AA	_	_	TT	_	_	_	_	_	_	_
13._IMC_54	AT	CC	CC	AC	_	_	_	_	CT	CT	AG	_	CT	_
14._GC-04-18-1-18	AA	CC	_	AA	GG	GG	_	GG	AG	_	GG	AA	AG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	AT
1._GC-04-018-1-18	AA	AA	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	AT
2._GC-04-018-1-18	AA	AA	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	AT
3._GC-04-018-1-18	AA	AA	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	AT
4._GC-04-018-1-18	AA	AA	GG	GG	CC	GG	CC	AA	TT	GG	TT	AA	CC	AT
5._IMC_54	_	_	GG	_	_	GG	_	_	_	_	TT	AA	CC	AT
6._IMC_54	_	_	GG	_	_	GG	_	_	_	_	TT	AA	CC	AT
7._IMC_54	_	_	GG	_	_	GG	_	_	_	_	TT	AA	CC	AT
8._IMC_54	_	_	GG	_	_	GG	_	_	_	_	TT	AA	CC	AT
9._IMC_54	_	_	GG	_	_	GG	_	_	_	_	TT	AA	CC	AT
10._RUQ_11	_	_	GG	_	_	GG	_	_	_	_	TT	AA	CC	AT
11._RUQ_11	_	_	_	_	CC	_	_	_	_	GG	_	AA	CC	_
12._RUQ_11	_	_	GG	TT	_	_	_	_	_	_	_	_	CC	_
13._IMC_54	_	_	GG	_	_	GG	_	_	_	_	AT	AT	CC	TT
14._GC-04-18-1-18	TT	AA	GG	CC	_	GG	GG	AA	AA	GG	TT	AA	GG	AT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC	GG
1._GC-04-018-1-18	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC	GG
2._GC-04-018-1-18	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC	GG
3._GC-04-018-1-18	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC	GG
4._GC-04-018-1-18	TT	GG	GG	GG	CC	AA	GT	GG	TT	AG	CC	GG	CC	GG
5._IMC_54	_	_	_	GG	_	AA	GT	_	_	AG	_	_	_	_
6._IMC_54	_	_	_	GG	_	AA	GT	_	_	AG	_	_	_	_
7._IMC_54	_	_	_	GG	_	AA	GT	_	_	AG	_	_	_	_
8._IMC_54	_	_	_	GG	_	AA	GT	_	_	AG	_	_	_	_
9._IMC_54	_	_	_	GG	_	AA	GT	_	_	AG	_	_	_	_
10._RUQ_11	_	_	_	GG	_	AA	GT	_	_	AG	_	_	_	_
11._RUQ_11	_	_	GG	GG	CC	AA	GT	_	_	AG	CC	_	_	GG
12._RUQ_11	_	_	_	GG	_	AA	_	_	_	_	CC	_	_	_
13._IMC_54	_	_	_	GG	_	AA	GT	_	_	GG	_	_	_	_
14._GC-04-18-1-18	AA	CC	GG	GG	CC	AA	AC	CC	AA	AG	GG	GG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	TT	AG	AG	AA	CC	CC	GG	AG	TT	TT	CT	CC	TT
1._GC-04-018-1-18	TT	TT	AG	AG	AA	CC	CC	GG	AG	TT	TT	CT	CC	TT
2._GC-04-018-1-18	TT	TT	AG	AG	AA	CC	CC	GG	AG	TT	TT	CT	CC	TT
3._GC-04-018-1-18	TT	TT	AG	AG	AA	CC	CC	GG	AG	TT	TT	CT	CC	TT
4._GC-04-018-1-18	TT	TT	AG	AG	AA	CC	CC	GG	AG	TT	TT	CT	CC	TT
5._IMC_54	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
6._IMC_54	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
7._IMC_54	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
8._IMC_54	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
9._IMC_54	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
10._RUQ_11	_	TT	_	_	_	_	_	_	_	_	_	CT	CC	_
11._RUQ_11	TT	_	_	AG	_	_	_	_	_	_	CT	CT	_	TT
12._RUQ_11	_	_	_	AG	_	_	_	_	_	_	_	_	_	_
13._IMC_54	_	TT	_	_	_	_	_	_	_	_	_	_	_	_
14._GC-04-18-1-18	_	AA	_	AG	AA	GG	_	GG	AG	AA	AG	AG	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	GG	CC	CC	TT	AA	GG	GG	CC	AG	GT	GG	GG	TT	CG
1._GC-04-018-1-18	GG	CC	CC	TT	AA	GG	GG	CC	AG	GT	GG	GG	TT	CG
2._GC-04-018-1-18	GG	CC	CC	TT	AA	GG	GG	CC	AG	GT	GG	GG	TT	CG
3._GC-04-018-1-18	GG	CC	CC	TT	AA	GG	GG	CC	AG	GT	GG	GG	TT	CG
4._GC-04-018-1-18	GG	CC	CC	TT	AA	GG	GG	CC	AG	GT	GG	GG	TT	CG
5._IMC_54	_	CC	_	TT	AA	GG	_	CC	AG	GT	GG	_	_	_
6._IMC_54	_	CC	_	TT	AA	GG	_	CC	AG	GT	GG	_	_	_
7._IMC_54	_	CC	_	TT	AA	GG	_	CC	AG	GT	GG	_	_	_
8._IMC_54	_	CC	_	TT	AA	GG	_	CC	AG	GT	GG	_	_	_
9._IMC_54	_	CC	_	TT	AA	GG	_	CC	AG	GT	GG	_	_	_
10._RUQ_11	_	CC	_	_	AC	GG	_	_	AG	GT	GG	_	_	_
11._RUQ_11	-	CC	CC	TT	AC	_	GG	CC	AG	GT	GG	GG	_	_
12._RUQ_11	GG	_	_	_	_	_	_	CC	AG	_	GG	GG	_	_
13._IMC_54	_	_	_	TT	AC	CG	_	CC	GG	GG	GT	_	_	_
14._GC-04-18-1-18	GG	GG	GG	AA	AC	GG	GG	CC	AG	AC	CC	GG	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	AA	CC	AA	AA	AC	AC	AA	CC	CG	CC	AT	AC	CC	TT
1._GC-04-018-1-18	AA	CC	AA	AA	AC	AC	AA	CC	CG	CC	AT	AC	CC	TT
2._GC-04-018-1-18	AA	CC	AA	AA	AC	AC	AA	CC	CG	CC	AT	AC	CC	TT
3._GC-04-018-1-18	AA	CC	AA	AA	AC	AC	AA	CC	CG	CC	AT	AC	CC	TT
4._GC-04-018-1-18	AA	CC	AA	AA	AC	AC	AA	CC	CG	CC	AT	AC	CC	TT
5._IMC_54	AA	CC	_	_	_	_	_	CC	CG	_	_	_	CC	TT
6._IMC_54	AA	CC	_	_	_	_	_	CC	CG	_	_	_	CC	TT
7._IMC_54	AA	CC	_	_	_	_	_	CC	CG	_	_	_	CC	TT
8._IMC_54	AA	CC	_	_	_	_	_	CC	CG	_	_	_	CC	TT
9._IMC_54	AA	CC	_	_	_	_	_	CC	CG	_	_	_	CC	TT
10._RUQ_11	AA	CC	_	_	_	_	_	CC	CG	_	_	_	CC	TT
11._RUQ_11	_	_	_	_	_	_	_	CC	CG	_	_	AC	CC	_
12._RUQ_11	AA	_	_	_	_	_	_	CC	CG	_	_	AC	_	_
13._IMC_54	AA	CT	_	_	_	_	_	CC	CG	_	_	_	CC	TT
14._GC-04-18-1-18	_	GG	AA	AA	AC	AC	_	CC	CG	GG	AT	AC	GG	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
1._GC-04-018-1-18	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
2._GC-04-018-1-18	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
3._GC-04-018-1-18	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
4._GC-04-018-1-18	CC	CT	AA	CC	TT	TT	TT	TT	GG	X_X	X_X	X_X	X_X	X_X
5._IMC_54	CC	_	AA	_	TT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
6._IMC_54	CC	_	AA	_	TT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
7._IMC_54	CC	_	AA	_	TT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
8._IMC_54	CC	_	AA	_	TT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
9._IMC_54	CC	_	AA	_	TT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
10._RUQ_11	CC	_	AA	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
11._RUQ_11	_	_	AA	CC	TT	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
12._RUQ_11	CC	_	_	CC	_	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
13._IMC_54	_	_	AA	_	CT	GT	_	_	_	X_X	X_X	X_X	X_X	X_X
14._GC-04-18-1-18	_	AG	_	_	AA	AA	AA	AA	GG	X_X	X_X	X_X	X_X	X_X

Input profile: IMC_54 GC-04-018-1-18

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP4

1._IMC_54 GC-04-018-1-18

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

2._IMC_54 GC-04-018-1-18

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP2

3._IMC_54 GC-04-018-1-18

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP1

4._IMC_54 GC-04-018-1-18

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

5._IMC_54

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 6 > FP

Dapeng Zhang, 2016

6._IMC_54

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 5 > FP

Dapeng Zhang, 2016

7._IMC_54

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 4 > FP

Dapeng Zhang, 2016

8._IMC_54

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 3 > FP

Dapeng Zhang, 2016

9._IMC_54

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 4118 7

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._IMC_54 RUQ_11

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

11._IMC_54 RUQ_11

93.9 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

12._IMC_54 RUQ_11

90.5 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

13._IMC_54

75.7 %
35 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D311

Dapeng Zhang, 2016

14._IMC_54 GC-04-18-1-18

50 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 1, Rep: 18, Tree: 7

Notes: MCCS_Structure_refs_above_0.9membership

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP872	28	TcSNP953	29	TcSNP1034	30	TcSNP1175
31	TcSNP1111	32	TcSNP577	33	TcSNP90	34	TcSNP998	35	TcSNP150
36	TcSNP28	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240