SNP Profiles of PA-175 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
1._NA	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
2._NA	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
3._NA	AA	AC	CT	AC	GG	GG	CC	CC	CC	CC	GG	TT	CC	TT
4._PA_175_[PER]	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
5._PA_175_[PER]	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
6._PA_175_[PER]	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
7._PA_175_[PER]	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
8._RUQ_37	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
9._PA_175_[PER]	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
10._RUQ_37	_	_	CT	AC	_	_	CT	_	CC	_	_	TT	CC	_
11._PA_175_[PER]	AA	AC	CT	AC	_	_	_	_	CC	CC	GG	_	CC	_
12._RUQ_37	_	_	_	AC	_	_	CT	_	_	_	_	_	_	_
13._-	AA	AC	_	AC	GG	GG	_	GG	GG	_	GG	AA	GG	AA
14._RUQ_37	AA	AC	_	AC	GG	GG	_	GG	GG	_	GG	AA	GG	AA
15._MITC-000016	AA	AC	_	AC	GG	GG	_	GG	GG	_	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
1._NA	AA	CC	AG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
2._NA	AA	CC	AG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
3._NA	AA	CC	AG	CG	CC	CG	CT	AA	TT	GG	AT	AA	CC	GG
4._PA_175_[PER]	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
5._PA_175_[PER]	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
6._PA_175_[PER]	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
7._PA_175_[PER]	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
8._RUQ_37	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
9._PA_175_[PER]	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
10._RUQ_37	_	_	_	_	CC	_	_	_	_	GG	_	AA	CC	GG
11._PA_175_[PER]	_	_	AG	TT	CC	CG	_	_	_	_	AT	AA	_	GG
12._RUQ_37	_	_	AG	TT	_	_	_	_	_	_	_	_	_	GG
13._-	TT	CC	AG	CG	_	CG	AG	GG	AA	GG	AT	AA	GG	CC
14._RUQ_37	TT	CC	AG	CG	_	CG	AG	GG	AA	GG	AT	AA	GG	CC
15._MITC-000016	TT	CC	AG	CG	_	CG	AG	GG	AA	GG	AT	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	CG	CC	AA	GG	TT	GG	TT	GG	CC	GG
1._NA	AA	TT	GT	GG	CG	CC	AA	GG	TT	GG	TT	GG	CC	GG
2._NA	AA	TT	GT	GG	CG	CC	AA	GG	TT	GG	TT	GG	CC	GG
3._NA	AA	TT	GT	GG	CG	CC	AA	GG	TT	GG	TT	GG	CC	GG
4._PA_175_[PER]	AA	_	_	_	CG	_	AA	GG	_	GG	_	_	_	_
5._PA_175_[PER]	AA	_	_	_	CG	_	AA	GG	_	GG	_	_	_	_
6._PA_175_[PER]	AA	_	_	_	CG	_	AA	GG	_	GG	_	_	_	_
7._PA_175_[PER]	AA	_	_	_	CG	_	AA	GG	_	GG	_	_	_	_
8._RUQ_37	AA	_	_	_	CG	_	AA	GG	_	GG	_	_	_	_
9._PA_175_[PER]	AA	_	_	_	CG	_	AA	GG	_	GG	_	_	_	_
10._RUQ_37	_	_	_	GG	CG	CC	AA	GG	_	GG	TT	_	_	GG
11._PA_175_[PER]	AA	_	_	_	CG	_	AA	GG	_	GG	_	_	_	_
12._RUQ_37	_	_	_	_	CG	_	AA	_	_	_	TT	_	_	_
13._-	AA	AA	AC	GG	CG	CC	AA	CC	AA	GG	AA	GG	GG	CC
14._RUQ_37	AA	AA	AC	GG	CG	CC	AA	CC	AA	GG	AA	GG	GG	CC
15._MITC-000016	AA	AA	AC	GG	CG	CC	AA	CC	AA	GG	AA	GG	GG	CC

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
1._NA	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
2._NA	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
3._NA	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC	TT
4._PA_175_[PER]	_	CC	_	_	_	_	_	_	_	_	_	CC	CC	_
5._PA_175_[PER]	_	CC	_	_	_	_	_	_	_	_	_	CC	CC	_
6._PA_175_[PER]	_	CC	_	_	_	_	_	_	_	_	_	CC	CC	_
7._PA_175_[PER]	_	CC	_	_	_	_	_	_	_	_	_	CC	CC	_
8._RUQ_37	_	CC	_	_	_	_	_	_	_	_	_	CC	CC	_
9._PA_175_[PER]	_	CC	_	_	_	_	_	_	_	_	_	CC	CC	_
10._RUQ_37	TT	_	_	GG	_	_	_	_	_	_	CT	CC	_	TT
11._PA_175_[PER]	_	CC	_	_	_	_	_	_	_	_	_	CC	CC	_
12._RUQ_37	_	_	_	GG	_	_	_	_	_	_	_	_	_	_
13._-	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG	GG	AA
14._RUQ_37	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG	GG	AA
15._MITC-000016	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG	GG	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AG	CC	CT	CT	AA	GG	GG	CC	GG	GT	GG	AG	CT	CC
1._NA	AG	CC	CT	CT	AA	GG	GG	CC	GG	GT	GG	AG	CT	CC
2._NA	AG	CC	CT	CT	AA	GG	GG	CC	GG	GT	GG	AG	CT	CC
3._NA	AG	CC	CT	CT	AA	GG	GG	CC	GG	GT	GG	AG	CT	CC
4._PA_175_[PER]	_	CC	_	CT	AA	GG	_	CC	GG	GT	GG	_	_	_
5._PA_175_[PER]	_	CC	_	CT	AA	GG	_	CC	GG	GT	GG	_	_	_
6._PA_175_[PER]	_	CC	_	CT	AA	GG	_	CC	GG	GT	GG	_	_	_
7._PA_175_[PER]	_	CC	_	CT	AA	GG	_	CC	GG	GT	GG	_	_	_
8._RUQ_37	_	CC	_	CT	AA	GG	_	CC	GG	GT	GG	_	_	_
9._PA_175_[PER]	_	CC	_	CT	AA	GG	_	CC	GG	GT	GG	_	_	_
10._RUQ_37	-	CC	CT	CT	AA	_	GG	CC	GG	GT	GG	AG	_	_
11._PA_175_[PER]	_	CC	_	CT	AA	GG	_	CC	GG	GT	-	_	_	_
12._RUQ_37	AG	_	_	_	_	_	_	CC	GG	_	GG	AG	_	_
13._-	AG	GG	AG	AG	AA	GG	GG	CC	GG	AC	CC	AG	_	_
14._RUQ_37	AG	GG	AG	AG	AA	GG	GG	CC	GG	AC	CC	AG	_	_
15._MITC-000016	AG	GG	AG	AG	AA	GG	GG	CC	GG	AC	CC	AG	_	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	GG	CT	CC	AG	AC	AC	AG	AC	CG	CC	AT	AA	TT	TT
1._NA	GG	CT	CC	AG	AC	AC	AG	AC	CG	CC	AT	AA	TT	TT
2._NA	GG	CT	CC	AG	AC	AC	AG	AC	CG	CC	AT	AA	TT	TT
3._NA	GG	CT	CC	AG	AC	AC	AG	AC	CG	CC	AT	AA	TT	TT
4._PA_175_[PER]	GG	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
5._PA_175_[PER]	GG	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
6._PA_175_[PER]	GG	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
7._PA_175_[PER]	GG	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
8._RUQ_37	AA	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
9._PA_175_[PER]	AA	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
10._RUQ_37	_	_	_	_	_	_	_	AC	CG	_	_	AA	TT	_
11._PA_175_[PER]	AA	CT	_	_	_	_	_	AC	CG	_	_	_	TT	TT
12._RUQ_37	AA	_	_	_	_	_	_	AA	CG	_	_	AA	_	_
13._-	_	AG	CC	AG	AC	AC	_	AC	CG	GG	AT	AA	AA	AA
14._RUQ_37	_	AG	CC	AG	AC	AC	_	AC	CG	GG	AT	AA	AA	AA
15._MITC-000016	_	AG	CC	AG	AC	AC	_	AC	CG	GG	AT	AA	AA	AA

	85	86	87	88	89	90	91	92	93
_Input profile	CC	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
1._NA	CC	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
2._NA	CC	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
3._NA	CC	TT	AA	CT	CC	TT	TT	AA	GG	X_X	X_X	X_X	X_X	X_X
4._PA_175_[PER]	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
5._PA_175_[PER]	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
6._PA_175_[PER]	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
7._PA_175_[PER]	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
8._RUQ_37	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
9._PA_175_[PER]	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
10._RUQ_37	_	_	AA	CC	CC	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
11._PA_175_[PER]	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X	X_X
12._RUQ_37	CC	_	_	CT	_	TT	_	_	_	X_X	X_X	X_X	X_X	X_X
13._-	_	AA	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X
14._RUQ_37	_	AA	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X
15._MITC-000016	_	AA	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X	X_X

Input profile: PA_175_[PER] NA

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

1._PA_175_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

2._PA_175_[PER] NA

identical
93 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

3._PA_175_[PER] NA

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

4._PA_175_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8127 5

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

5._PA_175_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8127 8

Dapeng Zhang, 2016

6._PA_175_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8127 9

Dapeng Zhang, 2016

7._PA_175_[PER]

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8127 12

Dapeng Zhang, 2016

8._PA_175_[PER] RUQ_37

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

9._PA_175_[PER]

97.5 %
40 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D 738

Dapeng Zhang, 2016

10._PA_175_[PER] RUQ_37

96.4 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._PA_175_[PER]

95.1 %
41 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 5B F473 T6

Dapeng Zhang, 2014

12._PA_175_[PER] RUQ_37

85.7 %
21 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

13._PA_175_[PER] -

50.6 %
79 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 27, Tree: 5

Notes: MCCS_Structure_refs_above_0.9membership

14._PA_175_[PER] RUQ_37

50.6 %
79 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

15._PA_175_[PER] MITC-000016

50.6 %
79 shared markers

View View all Clone Any

USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP751	38	TcSNP1484	39	TcSNP602	40	TcSNP561
41	TcSNP894	42	TcSNP1063	43	TcSNP1126	44	TcSNP1270	45	TcSNP606
46	TcSNP329	47	TcSNP689	48	TcSNP944	49	TcSNP1242	50	TcSNP1383
51	TcSNP547	52	TcSNP776	53	TcSNP1309	54	TcSNP151	55	TcSNP1520
56	TcSNP799	57	TcSNP899	58	TcSNP226	59	TcSNP1439	60	TcSNP1442
61	TcSNP193	62	TcSNP25	63	TcSNP364	64	TcSNP144	65	TcSNP230
66	TcSNP560	67	TcSNP723	68	TcSNP731	69	TcSNP701	70	TcSNP1041
71	TcSNP645	72	TcSNP917	73	Tcm003s01336581	74	Tcm003s07402719	75	Tcm001s00947643
76	Tcm006s26664133	77	Tcm002s20575712	78	TcSNP529	79	TcSNP1458	80	TcSNP60
81	TcSNP430	82	TcSNP823	83	TcSNP619	84	TcSNP994	85	TcSNP1144
86	TcSNP1156	87	TcSNP469	88	TcSNP999	89	TcSNP242	90	TcSNP1253
91	TcSNP1414	92	TcSNP154	93	TcSNP240