SNP Profiles of TSA-656   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAACCCACAGAGCTCTCTCTGGCTCTTT
1._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
2._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
3._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
4._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
5._TSA_656
AAACCCAC____CTCTGG_CT_
6._TSA_656
AAACCCAC____CTCTGG_CT_
7._TSA_656
AAACCCAC____CTCTGG_CT_
8._TSA_656
AAACCCAC____CTCTGG_CT_
9._TSA_656
AAACCCAC____CTCTGG_CT_
10._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
11._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
12._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
13._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
14._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
15._RUQ_1016
ATCCCCCC____CTCTAG_CT_
16._TSA_656
ATCCCCCC____CCCTAG_TT_
17._TSA_656
ATCCCCCC____CCCTAG_TT_
18._TSA_656
ATCCCCCC____CCCTAG_TT_
19._TSA_656
ATCCCCCC____CCCTAG_TT_
20._TSA_656
ATCCCCCC____CCCTAG_TT_
21._RUQ_1016
__CCCC__TT_CC__TTTT_
22._RUQ_1016
___CC__TT_______
 1516171819202122232425262728
_Input profile
AAACAAAGCGCGCGCCAACTGGATAACG
1._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
2._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
3._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
4._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
5._TSA_656
___AG__CG____ATAA_
6._TSA_656
___AG__CG____ATAA_
7._TSA_656
___AG__CG____ATAA_
8._TSA_656
___AG__CG____ATAA_
9._TSA_656
___AG__CG____ATAA_
10._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
11._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
12._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
13._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
14._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
15._RUQ_1016
___GG__CG____ATAA_
16._TSA_656
___GG__CG____ATAA_
17._TSA_656
___GG__CG____ATAA_
18._TSA_656
___GG__CG____ATAA_
19._TSA_656
___GG__CG____ATAA_
20._TSA_656
___GG__CG____ATAA_
21._RUQ_1016
_____CG____GG_AACC
22._RUQ_1016
___GGCT_________
 2930313233343536373839404142
_Input profile
CGATTTGTGGCGACAAGGGTGTAACCAG
1._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
2._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
3._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
4._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
5._TSA_656
CGAT___CG_AAGG__AA__
6._TSA_656
CGAT___CG_AAGG__AA__
7._TSA_656
CGAT___CG_AAGG__AA__
8._TSA_656
CGAT___CG_AAGG__AA__
9._TSA_656
CGAT___CG_AAGG__AA__
10._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
11._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
12._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
13._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
14._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
15._RUQ_1016
CCAT___GG_AAGG__AG__
16._TSA_656
CCAT___GG_AAGG__AG__
17._TSA_656
CCAT___GG_AAGG__AG__
18._TSA_656
CCAT___GG_AAGG__AG__
19._TSA_656
CCAT___GG_AAGG__AG__
20._TSA_656
CCAT___GG_AAGG__AG__
21._RUQ_1016
CC___GGGGCCAAGG__AACC_
22._RUQ_1016
CC____GG_AA____CC_
 4344454647484950515253545556
_Input profile
CCGTATCTAAAGAACTACAGAGGTTTCT
1._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
2._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
3._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
4._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
5._TSA_656
___CT_________CT
6._TSA_656
___CT_________CT
7._TSA_656
___CT_________CT
8._TSA_656
___CT_________CT
9._TSA_656
___CT_________CT
10._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
11._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
12._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
13._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
14._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
15._RUQ_1016
___CT_________TT
16._TSA_656
___TT_________CT
17._TSA_656
___TT_________CT
18._TSA_656
___TT_________CT
19._TSA_656
___TT_________CT
20._TSA_656
___TT_________CT
21._RUQ_1016
_GGTT__AA______CTTT
22._RUQ_1016
_____AA________
 5758596061626364656667686970
_Input profile
CTTTGGCCCTCCACCGGGACAAGTGGAA
1._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
2._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
3._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
4._GC-08-257-8-25
CTTT_CCCTCCACCGGGACAAGTGGAA
5._TSA_656
CT__CC_CCACCG_ACAAGTGG_
6._TSA_656
CT__CC_CCACCG_ACAAGTGG_
7._TSA_656
CT__CC_CCACCG_ACAAGTGG_
8._TSA_656
CT__CC_CCACCG_ACAAGTGG_
9._TSA_656
CT__CC_CCACCG_ACAAGTGG_
10._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
11._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
12._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
13._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
14._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
15._RUQ_1016
CC__CC_TTCCCG_ACAAGGGG_
16._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
17._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
18._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
19._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
20._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
21._RUQ_1016
_TTGGCCCCTTCC_GGCCAAGGGGAG
22._RUQ_1016
__GG______ACAA_GGAG
 7172737475767778798081828384
_Input profile
TTCCAGCTACAGCCACAGACCCCCAACC
1._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
2._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
3._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
4._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCAACC
5._TSA_656
__AGCT_____ACCC___
6._TSA_656
__AGCT_____ACCC___
7._TSA_656
__AGCT_____ACCC___
8._TSA_656
__AGCT_____ACCC___
9._TSA_656
__AGCT_____ACCC___
10._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
11._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
12._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
13._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCAACC
14._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCC_CC
15._RUQ_1016
__AGCC_____AACG___
16._TSA_656
__AACC_____AACG___
17._TSA_656
__AACC_____AACG___
18._TSA_656
__AACC_____AACG___
19._TSA_656
__AACC_____AACG___
20._TSA_656
__AACC_____AACG___
21._RUQ_1016
_________AACG__CC
22._RUQ_1016
__AG______AACG__CC
 8586878889909192939495   
_Input profile
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
1._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
2._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
3._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
4._GC-08-257-8-25
TTCTCTCTAGCTCCGTCTTTAGX_XX_XX_X
5._TSA_656
TTCTCT_AG_CCGTCT__X_XX_XX_X
6._TSA_656
TTCTCT_AG_CCGTCT__X_XX_XX_X
7._TSA_656
TTCTCT_AG_CCGTCT__X_XX_XX_X
8._TSA_656
TTCTCT_AG_CCGTCT__X_XX_XX_X
9._TSA_656
TTCTCT_AG_CCGTCT__X_XX_XX_X
10._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
11._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
12._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
13._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
14._GC-08-257-8-25
CTCTCCCCAGCCCTGTCTTTGGX_XX_XX_X
15._RUQ_1016
CTCTCC_AG_CTGTCT__X_XX_XX_X
16._TSA_656
CTCTCC_AG_CTGTCT__X_XX_XX_X
17._TSA_656
CTCTCC_AG_CTGTCT__X_XX_XX_X
18._TSA_656
CTCTCC_AG_CTGTCT__X_XX_XX_X
19._TSA_656
CTCTCC_AG_CTGTCT__X_XX_XX_X
20._TSA_656
CTCTCC_AG_CTGTCT__X_XX_XX_X
21._RUQ_1016
CT___AGCCCTGT___X_XX_XX_X
22._RUQ_1016
__CC__CC_GT___X_XX_XX_X

Input profile: TSA_656 GC-08-257-8-25

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._TSA_656 GC-08-257-8-25

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._TSA_656 GC-08-257-8-25

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._TSA_656 GC-08-257-8-25

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 8
 Dapeng Zhang, 2016

6._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

7._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

8._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 7
 Dapeng Zhang, 2016

9._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 4
 Dapeng Zhang, 2016

10._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._TSA_656 GC-08-257-8-25

76.8 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._TSA_656 RUQ_1016

75 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 10
 Dapeng Zhang, 2016

17._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 6
 Dapeng Zhang, 2016

18._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 3
 Dapeng Zhang, 2016

19._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 2
 Dapeng Zhang, 2016

20._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._TSA_656 RUQ_1016

69.8 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._TSA_656 RUQ_1016

69 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240