SNP Profiles of "TSA 656"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-257-8-25
______CGGTAT___AG______CCTTCCTT___
2. _GC-08-257-8-25
______CGGTAT___AG______CCTTCCTT___
3. _GC-08-257-8-25
______CGGTAT___AG______CCTTCCTT___
4. _GC-08-257-8-25
______CGGTAT___AG______CCCTACTT___
5. _GC-08-257-8-25
______CGGTAT___AG______CCTTCCTT___
6. _GC-08-257-8-25
______CGGTAT___AG______CCCTACTT___
7. _GC-08-257-8-25
______CGGTAT___AG______CCCTACTT___
8. _GC-08-257-8-25
______CGGTAT___AG______CCCTACTT___
9. _GC-08-257-8-25
______CGGTAT___AG______CCTTCCTT___
10. _GC-08-257-8-25
______CGGTAT___AG______CCCTACTT___
11. _8825_1
______CG___AT___________________________
12. _8825_2
______CG___AT___________________________
13. _8825_3
______CG___AT___________________________
14. _8825_6
______CG___AT___________________________
15. _8825_10
______CG___AT___________________________
16. _8825_4
______CG___AT___________________________
17. _8825_7
______CG___AT___________________________
18. _8825_8
______CG___AT___________________________
19. _8825_9
______CG___AT___________________________
20. _8825_9
______CG___AT___________________________
21. _RUQ_1016
CCAC_________TT___CCTT____________GT
22. _RUQ_1016
______________________________TTCC______
23. _RUQ_1016
______CG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-257-8-25
___ACGGCTTTGG______CC___CCAAGGCT
2. _GC-08-257-8-25
___ACGGCTTTGG______CC___CCAAGGCT
3. _GC-08-257-8-25
___ACGGCTTTGG______CC___CCAAGGCT
4. _GC-08-257-8-25
___ACGGCTTTGG______AC___CCAAAGCC
5. _GC-08-257-8-25
___ACGGCTTTGG______CC___CCAAGGCT
6. _GC-08-257-8-25
___ACGGCTTTGG______AC___CCAAAGCC
7. _GC-08-257-8-25
___ACGGCTTTGG______AC___CCAAAGCC
8. _GC-08-257-8-25
___ACGGCTTTGG______AC___CCAAAGCC
9. _GC-08-257-8-25
___ACGGCTTTGG______CC___CCAAGGCT
10. _GC-08-257-8-25
___ACGGCTTTGG______AC___CCAAAGCC
11. _8825_1
___ACGGCT____________CC___CCAA___CT
12. _8825_2
___ACGGCT____________CC___CCAA___CT
13. _8825_3
___ACGGCT____________CC___CCAA___CT
14. _8825_6
___ACGGCT____________CC___CCAA___CT
15. _8825_10
___ACGGCT____________CC___CCAA___CT
16. _8825_4
___ACGGCT____________AC___CCAA___CC
17. _8825_7
___ACGGCT____________AC___CCAA___CC
18. _8825_8
___ACGGCT____________AC___CCAA___CC
19. _8825_9
___ACGGCT____________AC___CCAA___CC
20. _8825_9
___ACGGCT____________AC___CCAA___CC
21. _RUQ_1016
AAAC____________TTAG___GG___AA______
22. _RUQ_1016
___CCGGTT___GG______CC___CCAA___CT
23. _RUQ_1016
___ACGGTT____________CC___CCAA___CT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-257-8-25
______ATAA___GGAACCAG___AGAACGAG
2. _GC-08-257-8-25
______ATAA___GGAACCAG___AGAACGAG
3. _GC-08-257-8-25
______ATAA___GGAACCAG___AGAACGAG
4. _GC-08-257-8-25
______AAAG___GGAACCAG___GGAACGAG
5. _GC-08-257-8-25
______ATAA___GGAACCAG___AG___CGAG
6. _GC-08-257-8-25
______AAAG___GGAACCAG___GGAACGAG
7. _GC-08-257-8-25
______AAAG___GGAACCAG___GGAACGAG
8. _GC-08-257-8-25
______AAAG___GGAACCAG___GGAACGAG
9. _GC-08-257-8-25
______ATAA___GGAACCAG___AGAACGAG
10. _GC-08-257-8-25
______AAAG___GGAACCAG___GGAACGAG
11. _8825_1
__________________AA_________AG______AG
12. _8825_2
__________________AA_________AG______AG
13. _8825_3
__________________AA_________AG______AG
14. _8825_6
__________________AA_________AG______AG
15. _8825_10
__________________AA_________AG______AG
16. _8825_4
__________________AA_________GG______AG
17. _8825_7
__________________AA_________GG______AG
18. _8825_8
__________________AA_________GG______AG
19. _8825_9
__________________AA_________GG______AG
20. _8825_9
__________________AA_________GG______AG
21. _RUQ_1016
TTAA___AAAA____________CC____________
22. _RUQ_1016
_________AA___GGAA_______________CCAG
23. _RUQ_1016
__________________AA_________AG______AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-257-8-25
___AA___AACC___AGGTGGGG___CCCCAG
2. _GC-08-257-8-25
___AA___AACC___AGGTGGGG___CCCCAG
3. _GC-08-257-8-25
___AA___AACC___AGGTGGGG___CCCCAG
4. _GC-08-257-8-25
___AC___ACCC___AGGTAGCG___ACCCAA
5. _GC-08-257-8-25
___AA___AACC___AGGTGGGG___CCCCAG
6. _GC-08-257-8-25
___AC___ACCC___AGGTAGCG___ACCCAA
7. _GC-08-257-8-25
___AC___ACCC___AGGTAGCG___ACCCAA
8. _GC-08-257-8-25
___AC___ACCC___AGGTAGCG___ACCCAA
9. _GC-08-257-8-25
___AA___AACC___AGGTGGGG___CCCCAG
10. _GC-08-257-8-25
___AC___ACCC___AGGTAGCG___ACCCAA
11. _8825_1
_________AACC______GT___GG___CC______
12. _8825_2
_________AACC______GT___GG___CC______
13. _8825_3
_________AACC______GT___GG___CC______
14. _8825_6
_________AACC______GT___GG___CC______
15. _8825_10
_________AACC______GT___GG___CC______
16. _8825_4
_________ACCC______GT___CG___AC______
17. _8825_7
_________ACCC______GT___CG___AC______
18. _8825_8
_________ACCC______GT___CG___AC______
19. _8825_9
_________ACCC______GT___CG___AC______
20. _8825_9
_________ACCC______GT___CG___AC______
21. _RUQ_1016
AA___CCAA___AG_________GGATCCCC___
22. _RUQ_1016
_________AACC______GG___GG___CCCC___
23. _RUQ_1016
_________AACC______GG___GG___CC______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-257-8-25
CT_________AAAA___AACTCTGGAG___TT
2. _GC-08-257-8-25
CT_________AAAA___AACTCTGGAG___TT
3. _GC-08-257-8-25
CT_________AAAA___AACTCTGGAG___TT
4. _GC-08-257-8-25
TT_________AGAA___AATTCTGGAA___GT
5. _GC-08-257-8-25
CT_________AAAA___AACTCTGGAG___TT
6. _GC-08-257-8-25
TT_________AGAA___AATTCTGGAA___GT
7. _GC-08-257-8-25
TT_________AGAA___AATTCTGGAA___GT
8. _GC-08-257-8-25
TT_________AGAA___AATTCTGGAA___GT
9. _GC-08-257-8-25
CT_________AAAA___AACTCTGGAG___TT
10. _GC-08-257-8-25
TT_________AGAA___AATTCTGGAA___GT
11. _8825_1
CT_________AA_______________GG_________
12. _8825_2
CT_________AA_______________GG_________
13. _8825_3
CT_________AA_______________GG_________
14. _8825_6
CT_________AA_______________GG_________
15. _8825_10
CT_________AA_______________GG_________
16. _8825_4
TT_________AG_______________GG_________
17. _8825_7
TT_________AG_______________GG_________
18. _8825_8
TT_________AG_______________GG_________
19. _8825_9
TT_________AG_______________GG_________
20. _8825_9
TT_________AG_______________GG_________
21. _RUQ_1016
___TTGGCCAG___CC______TTGGAGCC___
22. _RUQ_1016
CT________________________TTGGAG______
23. _RUQ_1016
CT_________AG_______________GG_________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-257-8-25
GGTT___CC___CCAACCCGTTCGGGCCCG
2. _GC-08-257-8-25
GGTT___CC___CCAACCCGTTCGGGCCCG
3. _GC-08-257-8-25
GGTT___CC___CCAACCCGTTCGGGCCCG
4. _GC-08-257-8-25
GTTT___CC___CGAACGCGCTCC___CTCG
5. _GC-08-257-8-25
GGTT___CC___CCAACCCGTTCGGGCCCG
6. _GC-08-257-8-25
GTTT___CC___CGAACGCGCTCCGGCTCG
7. _GC-08-257-8-25
GTTT___CC___CGAACGCGCTCCGGCTCG
8. _GC-08-257-8-25
GTTT___CC___CGAACGCGCTCCGGCTCG
9. _GC-08-257-8-25
GGTT___CC___CCAACCCGTTCGGGCCCG
10. _GC-08-257-8-25
GTTT___CC___CGAACGCGCTCCGGCTCG
11. _8825_1
_____________________CC___TT______CCCG
12. _8825_2
_____________________CC___TT______CCCG
13. _8825_3
_____________________CC___TT______CCCG
14. _8825_6
_____________________CC___TT______CCCG
15. _8825_10
_____________________CC___TT______CCCG
16. _8825_4
_____________________CG___CT______CTCG
17. _8825_7
_____________________CG___CT______CTCG
18. _8825_8
_____________________CG___CT______CTCG
19. _8825_9
_____________________CG___CT______CTCG
20. _8825_9
_____________________CG___CT______CTCG
21. _RUQ_1016
______TTCCATCT___CC_________GG______
22. _RUQ_1016
___TT___CC_________CCCGTT___GG______
23. _RUQ_1016
_____________________CC___CT______CCCG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-08-257-8-25
CC___ATCTAACC______TTGG___CCGGGG
2. _GC-08-257-8-25
CC___ATCTAACC______TTGG___CCGGGG
3. _GC-08-257-8-25
CC___ATCTAACC______TTGG___CCGGGG
4. _GC-08-257-8-25
CT___ATCTAACT______TTCC___CTAGGT
5. _GC-08-257-8-25
CC___ATCTAACC______TTGG___CCGGGG
6. _GC-08-257-8-25
CT___ATCTAACT______TTCC___CTAGGT
7. _GC-08-257-8-25
CT___ATCTAACT______TTCC___CTAGGT
8. _GC-08-257-8-25
CT___ATCTAACT______TTCC___CTAGGT
9. _GC-08-257-8-25
CC___ATCTAACC______TTGG___CCGGGG
10. _GC-08-257-8-25
CT___ATCTAACT______TTCC___CTAGGT
11. _8825_1
______ATCTAA__________________CCGG___
12. _8825_2
______ATCTAA__________________CCGG___
13. _8825_3
______ATCTAA__________________CCGG___
14. _8825_6
______ATCTAA__________________CCGG___
15. _8825_10
______ATCTAA__________________CCGG___
16. _8825_4
______ATCTAA__________________CTAG___
17. _8825_7
______ATCTAA__________________CTAG___
18. _8825_8
______ATCTAA__________________CTAG___
19. _8825_9
______ATCTAA__________________CTAG___
20. _8825_9
______ATCTAA__________________CTAG___
21. _RUQ_1016
___GG______AACCCTAA______CC___GG___
22. _RUQ_1016
____________AACC_______________CC___GG
23. _RUQ_1016
______ATCTAA__________________CTGG___
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-08-257-8-25
ATCTGG___TTCCCTCCCTGT_________AC
2. _GC-08-257-8-25
ATCTGG___TTCCCTCCCTGT_________AC
3. _GC-08-257-8-25
ATCTGG___TTCCCTCCCTGT_________AC
4. _GC-08-257-8-25
AACTGG___ATCTCTCTCTGT_________AC
5. _GC-08-257-8-25
ATCTGG___TTCCCTCCCTGT_________AC
6. _GC-08-257-8-25
AACTGG___ATCTCTCTCTGT_________AC
7. _GC-08-257-8-25
AACTGG___ATCTCTCTCTGT_________AC
8. _GC-08-257-8-25
AACTGG___ATCTCTCTCTGT_________AC
9. _GC-08-257-8-25
ATCTGG___TTCCCTCCCTGT_________AC
10. _GC-08-257-8-25
AACTGG___ATCTCTCTCTGT_________AC
11. _8825_1
AT____________CC______CT_______________
12. _8825_2
AT____________CC______CT_______________
13. _8825_3
AT____________CC______CT_______________
14. _8825_6
AT____________CC______CT_______________
15. _8825_10
AT____________CC______CT_______________
16. _8825_4
AA____________CT______CT_______________
17. _8825_7
AA____________CT______CT_______________
18. _8825_8
AA____________CT______CT_______________
19. _8825_9
AA____________CT______CT_______________
20. _8825_9
AA____________CT______CT_______________
21. _RUQ_1016
_________CC___CC____________GGAACC___
22. _RUQ_1016
______GG___TT___________________________
23. _RUQ_1016
AT____________CC______CT_______________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-08-257-8-25
GTTT______TTCCAG______CTCCCTCGAG
2. _GC-08-257-8-25
GTTT______TTCCAG______CTCCCTCGAG
3. _GC-08-257-8-25
GTTT______TTCCAG______CTCCCTCGAG
4. _GC-08-257-8-25
GTCT______TTACAG______CTCTCCCCAA
5. _GC-08-257-8-25
GTTT______TTCCAG______CTCCCTCGAG
6. _GC-08-257-8-25
GTCT______TTACAG______CTCTCCCCAA
7. _GC-08-257-8-25
GTCT______TTACAG______CTCTCCCCAA
8. _GC-08-257-8-25
GTCT______TTACAG______CTCTCCCCAA
9. _GC-08-257-8-25
GTTT______TTCCAG______CTCCCTCGAG
10. _GC-08-257-8-25
GTCT______TTACAG______CTCTCCCCAA
11. _8825_1
GTTT_________CC_________CT___CTCGAG
12. _8825_2
GTTT_________CC_________CT___CTCGAG
13. _8825_3
GTTT_________CC_________CT___CTCGAG
14. _8825_6
GTTT_________CC_________CT___CTCGAG
15. _8825_10
GTTT_________CC_________CT___CTCGAG
16. _8825_4
GTCT_________AC_________CT___CCCCAA
17. _8825_7
GTCT_________AC_________CT___CCCCAA
18. _8825_8
GTCT_________AC_________CT___CCCCAA
19. _8825_9
GTCT_________AC_________CT___CCCCAA
20. _8825_9
GTCT_________AC_________CT___CCCCAA
21. _RUQ_1016
GT___GGAT_________AAAG_________CG___
22. _RUQ_1016
GT_________CT_______________CCTTCGAA
23. _RUQ_1016
GTCT_________CC_________CT___TTCGAG
 127 128 129 130 131 132 133 134       
1. _GC-08-257-8-25
CC______CCAAACAGACX_XX_XX_XX_XX_XX_X
2. _GC-08-257-8-25
CC______CCAAACAGACX_XX_XX_XX_XX_XX_X
3. _GC-08-257-8-25
CC______CCAAACAGACX_XX_XX_XX_XX_XX_X
4. _GC-08-257-8-25
CT______CCAGACAGACX_XX_XX_XX_XX_XX_X
5. _GC-08-257-8-25
CC______CCAAACAGACX_XX_XX_XX_XX_XX_X
6. _GC-08-257-8-25
CT______CCAGACAGACX_XX_XX_XX_XX_XX_X
7. _GC-08-257-8-25
CT______CCAGACAGACX_XX_XX_XX_XX_XX_X
8. _GC-08-257-8-25
CT______CCAGACAGACX_XX_XX_XX_XX_XX_X
9. _GC-08-257-8-25
CC______CCAAACAGACX_XX_XX_XX_XX_XX_X
10. _GC-08-257-8-25
CT______CCAGACAGACX_XX_XX_XX_XX_XX_X
11. _8825_1
CC_____________________X_XX_XX_XX_XX_XX_X
12. _8825_2
CC_____________________X_XX_XX_XX_XX_XX_X
13. _8825_3
CC_____________________X_XX_XX_XX_XX_XX_X
14. _8825_6
CC_____________________X_XX_XX_XX_XX_XX_X
15. _8825_10
CC_____________________X_XX_XX_XX_XX_XX_X
16. _8825_4
CT_____________________X_XX_XX_XX_XX_XX_X
17. _8825_7
CT_____________________X_XX_XX_XX_XX_XX_X
18. _8825_8
CT_____________________X_XX_XX_XX_XX_XX_X
19. _8825_9
CT_____________________X_XX_XX_XX_XX_XX_X
20. _8825_9
CT_____________________X_XX_XX_XX_XX_XX_X
21. _RUQ_1016
___CTAA_______________X_XX_XX_XX_XX_XX_X
22. _RUQ_1016
________________________X_XX_XX_XX_XX_XX_X
23. _RUQ_1016
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._TSA_656 GC-08-257-8-25
Location: Tree: 1
Notes: 1
 Mars, 2018
2._TSA_656 GC-08-257-8-25
Location: Tree: 2
Notes: 2
 Mars, 2018
3._TSA_656 GC-08-257-8-25
Location: Tree: 3
Notes: 3
 Mars, 2018
4._TSA_656 GC-08-257-8-25
Location: Tree: 4
Notes: 4
 Mars, 2018
5._TSA_656 GC-08-257-8-25
Location: Tree: 6
Notes: 6
 Mars, 2018
6._TSA_656 GC-08-257-8-25
Location: Tree: 7
Notes: 7
 Mars, 2018
7._TSA_656 GC-08-257-8-25
Location: Tree: 8
Notes: 8
 Mars, 2018
8._TSA_656 GC-08-257-8-25
Location: Tree: 9
Notes: 9
 Mars, 2018
9._TSA_656 GC-08-257-8-25
Location: Tree: 10
Notes: 10
 Mars, 2018
10._TSA_656 GC-08-257-8-25
Location: Tree: 9
Notes: 9
 Mars, 2018
11._TSA_656
Location: 8825 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
12._TSA_656
Location: 8825 2
 Dapeng Zhang, 2016
13._TSA_656
Location: 8825 3
 Dapeng Zhang, 2016
14._TSA_656
Location: 8825 6
 Dapeng Zhang, 2016
15._TSA_656
Location: 8825 10
 Dapeng Zhang, 2016
16._TSA_656
Location: 8825 4
 Dapeng Zhang, 2016
17._TSA_656
Location: 8825 7
 Dapeng Zhang, 2016
18._TSA_656
Location: 8825 8
 Dapeng Zhang, 2016
19._TSA_656
Location: 8825 9
 Dapeng Zhang, 2016
20._TSA_656
Location: 8825 9
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

21._TSA_656 RUQ 1016
 Lambert Motilal, 2023
22._TSA_656 RUQ 1016
 Dapeng Zhang, 2014
23._TSA_656 RUQ 1016
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP606 57TcSNP619 58TcSNP640 59TcSNP642 60TcSNP644
61TcSNP645 62TcSNP653 63TcSNP660 64TcSNP689 65TcSNP701
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP860 78TcSNP872 79TcSNP878 80TcSNP891
81TcSNP894 82TcSNP899 83TcSNP917 84TcSNP929 85TcSNP944
86TcSNP945 87TcSNP953 88TcSNP994 89TcSNP998 90TcSNP999
91TcSNP1010 92TcSNP1019 93TcSNP1034 94TcSNP1041 95TcSNP1053
96TcSNP1060 97TcSNP1062 98TcSNP1063 99TcSNP1075 100TcSNP1096
101TcSNP1111 102TcSNP1112 103TcSNP1126 104TcSNP1144 105TcSNP1149
106TcSNP1156 107TcSNP1165 108TcSNP1175 109TcSNP1205 110TcSNP1230
111TcSNP1237 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133