SNP Profiles of TSA-656   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
1._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
2._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
3._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
4._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
5._TSA_656
ATCCCCCC____CCCTAG_TT_
6._TSA_656
ATCCCCCC____CCCTAG_TT_
7._TSA_656
ATCCCCCC____CCCTAG_TT_
8._TSA_656
ATCCCCCC____CCCTAG_TT_
9._TSA_656
ATCCCCCC____CCCTAG_TT_
10._RUQ_1016
___CC__TT_______
11._RUQ_1016
ATCCCCCC____CTCTAG_CT_
12._RUQ_1016
__CCCC__TT_CC__TTTT_
13._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
14._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
15._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
16._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
17._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
18._TSA_656
AAACCCAC____CTCTGG_CT_
19._TSA_656
AAACCCAC____CTCTGG_CT_
20._TSA_656
AAACCCAC____CTCTGG_CT_
21._TSA_656
AAACCCAC____CTCTGG_CT_
22._TSA_656
AAACCCAC____CTCTGG_CT_
 1516171819202122232425262728
_Input profile
ATAAAAGGCCCGCGCCAACTGGATAACG
1._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
2._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
3._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
4._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
5._TSA_656
___GG__CG____ATAA_
6._TSA_656
___GG__CG____ATAA_
7._TSA_656
___GG__CG____ATAA_
8._TSA_656
___GG__CG____ATAA_
9._TSA_656
___GG__CG____ATAA_
10._RUQ_1016
___GGCT_________
11._RUQ_1016
___GG__CG____ATAA_
12._RUQ_1016
_____CG____GG_AACC
13._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
14._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
15._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
16._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
17._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
18._TSA_656
___AG__CG____ATAA_
19._TSA_656
___AG__CG____ATAA_
20._TSA_656
___AG__CG____ATAA_
21._TSA_656
___AG__CG____ATAA_
22._TSA_656
___AG__CG____ATAA_
 2930313233343536373839404142
_Input profile
CCATTTGTGGGGCCAAGGGTTTAGCCGG
1._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
2._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
3._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
4._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
5._TSA_656
CCAT___GG_AAGG__AG__
6._TSA_656
CCAT___GG_AAGG__AG__
7._TSA_656
CCAT___GG_AAGG__AG__
8._TSA_656
CCAT___GG_AAGG__AG__
9._TSA_656
CCAT___GG_AAGG__AG__
10._RUQ_1016
CC____GG_AA____CC_
11._RUQ_1016
CCAT___GG_AAGG__AG__
12._RUQ_1016
CC___GGGGCCAAGG__AACC_
13._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
14._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
15._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
16._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
17._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
18._TSA_656
CGAT___CG_AAGG__AA__
19._TSA_656
CGAT___CG_AAGG__AA__
20._TSA_656
CGAT___CG_AAGG__AA__
21._TSA_656
CGAT___CG_AAGG__AA__
22._TSA_656
CGAT___CG_AAGG__AA__
 4344454647484950515253545556
_Input profile
CGGGTTTTAGAAAACCACAGAGGGTTCT
1._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
2._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
3._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
4._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
5._TSA_656
___TT_________CT
6._TSA_656
___TT_________CT
7._TSA_656
___TT_________CT
8._TSA_656
___TT_________CT
9._TSA_656
___TT_________CT
10._RUQ_1016
_____AA________
11._RUQ_1016
___CT_________TT
12._RUQ_1016
_GGTT__AA______CTTT
13._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
14._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
15._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
16._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
17._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
18._TSA_656
___CT_________CT
19._TSA_656
___CT_________CT
20._TSA_656
___CT_________CT
21._TSA_656
___CT_________CT
22._TSA_656
___CT_________CT
 5758596061626364656667686970
_Input profile
CCTTGGCCCCCTCCCGGGACAAGTGGAG
1._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
2._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
3._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
4._GC-08-257-8-25
CCTTGGCCCCCTCCCGGGACAAGTGGAG
5._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
6._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
7._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
8._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
9._TSA_656
CC__CC_CTCCCG_ACAAGTGG_
10._RUQ_1016
__GG______ACAA_GGAG
11._RUQ_1016
CC__CC_TTCCCG_ACAAGGGG_
12._RUQ_1016
_TTGGCCCCTTCC_GGCCAAGGGGAG
13._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
14._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
15._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
16._GC-08-257-8-25
CTTTGGCCCTCCACCGGGACAAGTGGAA
17._GC-08-257-8-25
CTTT_CCCTCCACCGGGACAAGTGGAA
18._TSA_656
CT__CC_CCACCG_ACAAGTGG_
19._TSA_656
CT__CC_CCACCG_ACAAGTGG_
20._TSA_656
CT__CC_CCACCG_ACAAGTGG_
21._TSA_656
CT__CC_CCACCG_ACAAGTGG_
22._TSA_656
CT__CC_CCACCG_ACAAGTGG_
 7172737475767778798081828384
_Input profile
CTGGAACCACAGCCACAAAACGCCCCCT
1._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCCCCT
2._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCCCCT
3._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCCCCT
4._GC-08-257-8-25
CTGGAACCACAGCCACAAAACGCCCCCT
5._TSA_656
__AACC_____AACG__CT
6._TSA_656
__AACC_____AACG__CT
7._TSA_656
__AACC_____AACG__CT
8._TSA_656
__AACC_____AACG__CT
9._TSA_656
__AACC_____AACG__CT
10._RUQ_1016
__AG______AACG_CC_
11._RUQ_1016
__AGCC_____AACG__CT
12._RUQ_1016
_________AACG_CCCT
13._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCCCTT
14._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCCCTT
15._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCCCTT
16._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCCCTT
17._GC-08-257-8-25
TTCCAGCTACAGCCACAGACCCCCCCTT
18._TSA_656
__AGCT_____ACCC__TT
19._TSA_656
__AGCT_____ACCC__TT
20._TSA_656
__AGCT_____ACCC__TT
21._TSA_656
__AGCT_____ACCC__TT
22._TSA_656
__AGCT_____ACCC__TT
 85868788899091929394    
_Input profile
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
1._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
2._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
3._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
4._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
5._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
6._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
7._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
8._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
9._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
10._RUQ_1016
_CC__CC_GT___X_XX_XX_XX_X
11._RUQ_1016
CTCC_AG_CTGTCT__X_XX_XX_XX_X
12._RUQ_1016
___AGCCCTGT___X_XX_XX_XX_X
13._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
14._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
15._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
16._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
17._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
18._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
19._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
20._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
21._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
22._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X

Input profile: TSA_656 GC-08-257-8-25

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 10
 Dapeng Zhang, 2016

6._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 6
 Dapeng Zhang, 2016

7._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 3
 Dapeng Zhang, 2016

8._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 2
 Dapeng Zhang, 2016

9._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._TSA_656 RUQ_1016

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

11._TSA_656 RUQ_1016

91.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._TSA_656 RUQ_1016

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._TSA_656 GC-08-257-8-25

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 8
 Dapeng Zhang, 2016

19._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

20._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

21._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 7
 Dapeng Zhang, 2016

22._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 4
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240