SNP Profiles of TSA-656   View Data

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 Key

 1234567891011121314
_Input profile
AAACCCACAGAGCTCTCTCTGGCTCTTT
1._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
2._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
3._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
4._GC-08-257-8-25
AAACCCACAGAGCTCTCTCTGGCTCTTT
5._TSA_656
AAACCCAC____CTCTGG_CT_
6._TSA_656
AAACCCAC____CTCTGG_CT_
7._TSA_656
AAACCCAC____CTCTGG_CT_
8._TSA_656
AAACCCAC____CTCTGG_CT_
9._TSA_656
AAACCCAC____CTCTGG_CT_
10._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
11._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
12._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
13._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
14._GC-08-257-8-25
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
15._RUQ_1016
ATCCCCCC____CTCTAG_CT_
16._TSA_656
ATCCCCCC____CCCTAG_TT_
17._TSA_656
ATCCCCCC____CCCTAG_TT_
18._TSA_656
ATCCCCCC____CCCTAG_TT_
19._TSA_656
ATCCCCCC____CCCTAG_TT_
20._TSA_656
ATCCCCCC____CCCTAG_TT_
21._RUQ_1016
__CCCC__TT_CC__TTTT_
22._RUQ_1016
___CC__TT_______
 1516171819202122232425262728
_Input profile
AAACAAAGCGCGCGCCAACTGGATAACG
1._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
2._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
3._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
4._GC-08-257-8-25
AAACAAAGCGCGCGCCAACTGGATAACG
5._TSA_656
___AG__CG____ATAA_
6._TSA_656
___AG__CG____ATAA_
7._TSA_656
___AG__CG____ATAA_
8._TSA_656
___AG__CG____ATAA_
9._TSA_656
___AG__CG____ATAA_
10._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
11._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
12._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
13._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
14._GC-08-257-8-25
ATAAAAGGCCCGCGCCAACTGGATAACG
15._RUQ_1016
___GG__CG____ATAA_
16._TSA_656
___GG__CG____ATAA_
17._TSA_656
___GG__CG____ATAA_
18._TSA_656
___GG__CG____ATAA_
19._TSA_656
___GG__CG____ATAA_
20._TSA_656
___GG__CG____ATAA_
21._RUQ_1016
_____CG____GG_AACC
22._RUQ_1016
___GGCT_________
 2930313233343536373839404142
_Input profile
CGATTTGTGGCGACAAGGGTGTAACCAG
1._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
2._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
3._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
4._GC-08-257-8-25
CGATTTGTGGCGACAAGGGTGTAACCAG
5._TSA_656
CGAT___CG_AAGG__AA__
6._TSA_656
CGAT___CG_AAGG__AA__
7._TSA_656
CGAT___CG_AAGG__AA__
8._TSA_656
CGAT___CG_AAGG__AA__
9._TSA_656
CGAT___CG_AAGG__AA__
10._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
11._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
12._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
13._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
14._GC-08-257-8-25
CCATTTGTGGGGCCAAGGGTTTAGCCGG
15._RUQ_1016
CCAT___GG_AAGG__AG__
16._TSA_656
CCAT___GG_AAGG__AG__
17._TSA_656
CCAT___GG_AAGG__AG__
18._TSA_656
CCAT___GG_AAGG__AG__
19._TSA_656
CCAT___GG_AAGG__AG__
20._TSA_656
CCAT___GG_AAGG__AG__
21._RUQ_1016
CC___GGGGCCAAGG__AACC_
22._RUQ_1016
CC____GG_AA____CC_
 4344454647484950515253545556
_Input profile
CCGTATCTAAAGAACTACAGAGGTTTCT
1._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
2._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
3._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
4._GC-08-257-8-25
CCGTATCTAAAGAACTACAGAGGTTTCT
5._TSA_656
___CT_________CT
6._TSA_656
___CT_________CT
7._TSA_656
___CT_________CT
8._TSA_656
___CT_________CT
9._TSA_656
___CT_________CT
10._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
11._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
12._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
13._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
14._GC-08-257-8-25
CGGGTTTTAGAAAACCACAGAGGGTTCT
15._RUQ_1016
___CT_________TT
16._TSA_656
___TT_________CT
17._TSA_656
___TT_________CT
18._TSA_656
___TT_________CT
19._TSA_656
___TT_________CT
20._TSA_656
___TT_________CT
21._RUQ_1016
_GGTT__AA______CTTT
22._RUQ_1016
_____AA________
 5758596061626364656667686970
_Input profile
CTTTCCCTCCACCGGGACAAGTGGAATT
1._GC-08-257-8-25
CTTTCCCTCCACCGGGACAAGTGGAATT
2._GC-08-257-8-25
CTTTCCCTCCACCGGGACAAGTGGAATT
3._GC-08-257-8-25
CTTTCCCTCCACCGGGACAAGTGGAATT
4._GC-08-257-8-25
CTTTCCCTCCACCGGGACAAGTGGAATT
5._TSA_656
CT_CC_CCACCG_ACAAGTGG__
6._TSA_656
CT_CC_CCACCG_ACAAGTGG__
7._TSA_656
CT_CC_CCACCG_ACAAGTGG__
8._TSA_656
CT_CC_CCACCG_ACAAGTGG__
9._TSA_656
CT_CC_CCACCG_ACAAGTGG__
10._GC-08-257-8-25
CCTTCCCCCTCCCGGGACAAGTGGAGCT
11._GC-08-257-8-25
CCTTCCCCCTCCCGGGACAAGTGGAGCT
12._GC-08-257-8-25
CCTTCCCCCTCCCGGGACAAGTGGAGCT
13._GC-08-257-8-25
CCTTCCCCCTCCCGGGACAAGTGGAGCT
14._GC-08-257-8-25
CCTTCCCCCTCCCGGGACAAGTGGAGCT
15._RUQ_1016
CC_CC_TTCCCG_ACAAGGGG__
16._TSA_656
CC_CC_CTCCCG_ACAAGTGG__
17._TSA_656
CC_CC_CTCCCG_ACAAGTGG__
18._TSA_656
CC_CC_CTCCCG_ACAAGTGG__
19._TSA_656
CC_CC_CTCCCG_ACAAGTGG__
20._TSA_656
CC_CC_CTCCCG_ACAAGTGG__
21._RUQ_1016
_TTCCCCTTCC_GGCCAAGGGGAG_
22._RUQ_1016
________ACAA_GGAG_
 7172737475767778798081828384
_Input profile
CCAGCTACAGCCACAGACCCCCAACCTT
1._GC-08-257-8-25
CCAGCTACAGCCACAGACCCCCAACCTT
2._GC-08-257-8-25
CCAGCTACAGCCACAGACCCCCAACCTT
3._GC-08-257-8-25
CCAGCTACAGCCACAGACCCCCAACCTT
4._GC-08-257-8-25
CCAGCTACAGCCACAGACCCCCAACCTT
5._TSA_656
_AGCT_____ACCC___TT
6._TSA_656
_AGCT_____ACCC___TT
7._TSA_656
_AGCT_____ACCC___TT
8._TSA_656
_AGCT_____ACCC___TT
9._TSA_656
_AGCT_____ACCC___TT
10._GC-08-257-8-25
GGAACCACAGCCACAAAACGCCAACCCT
11._GC-08-257-8-25
GGAACCACAGCCACAAAACGCCAACCCT
12._GC-08-257-8-25
GGAACCACAGCCACAAAACGCCAACCCT
13._GC-08-257-8-25
GGAACCACAGCCACAAAACGCCAACCCT
14._GC-08-257-8-25
GGAACCACAGCCACAAAACGCC_CCCT
15._RUQ_1016
_AGCC_____AACG___CT
16._TSA_656
_AACC_____AACG___CT
17._TSA_656
_AACC_____AACG___CT
18._TSA_656
_AACC_____AACG___CT
19._TSA_656
_AACC_____AACG___CT
20._TSA_656
_AACC_____AACG___CT
21._RUQ_1016
________AACG__CCCT
22._RUQ_1016
_AG______AACG__CC_
 85868788899091929394    
_Input profile
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
1._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
2._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
3._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
4._GC-08-257-8-25
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
5._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
6._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
7._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
8._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
9._TSA_656
CTCT_AG_CCGTCT__X_XX_XX_XX_X
10._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
11._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
12._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
13._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
14._GC-08-257-8-25
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
15._RUQ_1016
CTCC_AG_CTGTCT__X_XX_XX_XX_X
16._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
17._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
18._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
19._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
20._TSA_656
CTCC_AG_CTGTCT__X_XX_XX_XX_X
21._RUQ_1016
___AGCCCTGT___X_XX_XX_XX_X
22._RUQ_1016
_CC__CC_GT___X_XX_XX_XX_X

Input profile: TSA_656 GC-08-257-8-25

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

2._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

3._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

4._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 8
 Dapeng Zhang, 2016

6._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

7._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

8._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 7
 Dapeng Zhang, 2016

9._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 4
 Dapeng Zhang, 2016

10._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

11._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

13._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

14._TSA_656 GC-08-257-8-25

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

15._TSA_656 RUQ_1016

75 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 10
 Dapeng Zhang, 2016

17._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 6
 Dapeng Zhang, 2016

18._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 3
 Dapeng Zhang, 2016

19._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 2
 Dapeng Zhang, 2016

20._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

21._TSA_656 RUQ_1016

69 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._TSA_656 RUQ_1016

67.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240