SNP Profiles of TSA-664   View Data

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 1234567891011121314
_Input profile
CCCTAAAATTTTTTTTAGTTCTCTAAAC
1._GC-08-175-4-18
CCCTAAAATTTTTTTTAGTTCTCTAAAC
2._GC-08-175-4-18
CCCTAAAATTTTTTTTAGTTCTCTAAAC
3._GC-08-175-4-18
CCCTAAAATTTTTTTTAGTTCTCTAAAC
4._GC-08-174-4-17
CCCTAAAATTTTTTTTAGTTCTCTAAAC
5._GC-08-174-4-17
CCCTAAAATTTTTTTTAGTTCTCTAAAC
6._GC-04-034-2-16
CCCTGGAGCTCTTTCTAGTTCTTTATAA
7._GC-08-175-4-18
CCCTGGAGCTCTTTCTAGTTCTTTATAA
8._GC-08-174-4-17
CCCTGGAGCTCTTTCTAGTTCTTTATAA
9._GC-04-034-2-16
CCCTGGAGCTCTTTCTAGTTCTTTATAA
10._GC-04-034-2-16
CCCTGGAGCTCTTTCTAGTTCTTTATAA
11._GC-04-034-2-16
CCCTGGAGCTCTTTCTAGTTCTTTATAA
12._GC-04-034-2-16
CCCTGGAGCTCTTTCTAGTTCTTTATAA
13._GC-08-174-4-17
CCCTGGAGCTCTTTCTAGTTCTTTATAA
14._GC-08-174-4-17
CCTTGGAGCTCTTTCTAGTTCTTTATAA
15._TSA_644
CCCT____TTCTAG_CT___
16._TSA_644
CCCT____TTCTAG_CT___
17._TSA_644
CCCT____TTCTAG_CT___
18._TSA_644
CCCT____TTCTAG_CT___
19._TSA_644
CCCT____TTCTAG_CT___
20._TSA_644
CCCT_____CTAG_CT___
 1516171819202122232425262728
_Input profile
AAAGCCCGCGCCAACTGGAAATGGCGAT
1._GC-08-175-4-18
AAAGCCCGCGCCAACTGGAAATGGCGAT
2._GC-08-175-4-18
AAAGCCCGCGCCAACTGGAAATGGCGAT
3._GC-08-175-4-18
AAAGCCCGCGCCAACTGGAAATGGCGAT
4._GC-08-174-4-17
AAAGCCCGCGCCAACTGGAAATGGCGAT
5._GC-08-174-4-17
AAAGCCCGCGCCAACTGGAAATGGCGAT
6._GC-04-034-2-16
AAAGCGCCCGCCAACTGGATAACGCCAT
7._GC-08-175-4-18
AAAGCGCCCGCCAACTGGATAACGCCAT
8._GC-08-174-4-17
AAAGCGCCCGCCAACTGGATAACGCCAT
9._GC-04-034-2-16
AAAGCGCCCGCCAACTGGATAACGCCAT
10._GC-04-034-2-16
AAAGCGCCCGCCAACTGGATAACGCCAT
11._GC-04-034-2-16
AAAGCGCCCGCCAACTGGATAACGCCAT
12._GC-04-034-2-16
AAAGCGCCCGCCAACTGGATAACGCCAT
13._GC-08-174-4-17
AAAGCGCCCGCCAACTGGATAACGCCAT
14._GC-08-174-4-17
AAAGCGCCCGCCAACTGGATAACGCCAT
15._TSA_644
_AG__CG____ATAA_CCAT
16._TSA_644
_AG__CG____ATAA_CCAT
17._TSA_644
_AG__CG____ATAA_CCAT
18._TSA_644
_AG__CG____ATAA_CCAT
19._TSA_644
_AG__CG____ATAA_CCAT
20._TSA_644
_AG__CG____ATAA_CC_
 2930313233343536373839404142
_Input profile
CTGTGGCGCCAAGTGTTTAGCCAGCGGG
1._GC-08-175-4-18
CTGTGGCGCCAAGTGTTTAGCCAGCGGG
2._GC-08-175-4-18
CTGTGGCGCCAAGTGTTTAGCCAGCGGG
3._GC-08-175-4-18
CTGTGGCGCCAAGTGTTTAGCCAGCGGG
4._GC-08-174-4-17
CTGTGGCGCCAAGTGTTTAGCCAGCGGG
5._GC-08-174-4-17
CTGTGGCGCCAAGTGTTTAGCCAGCGGG
6._GC-04-034-2-16
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
7._GC-08-175-4-18
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
8._GC-08-174-4-17
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
9._GC-04-034-2-16
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
10._GC-04-034-2-16
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
11._GC-04-034-2-16
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
12._GC-04-034-2-16
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
13._GC-08-174-4-17
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
14._GC-08-174-4-17
TTTTGGGGCCAAGGGTTTAGCCGGCGGG
15._TSA_644
___GG_AAGG__AG____
16._TSA_644
___GG_AAGG__AG____
17._TSA_644
___GG_AAGG__AG____
18._TSA_644
___GG_AAGG__AG____
19._TSA_644
___GG_AAGG__AG____
20._TSA_644
___GG__GG__AG____
 4344454647484950515253545556
_Input profile
TTCTAAAGAACCACAGAAGTTTCTTTGG
1._GC-08-175-4-18
TTCTAAAGAACCACAGAAGTTTCTTTGG
2._GC-08-175-4-18
TTCTAAAGAACCACAGAAGTTTCTTTGG
3._GC-08-175-4-18
TTCTAAAGAACCACAGAAGTTTCTTTGG
4._GC-08-174-4-17
TTCTAAAGAACCACAGAAGTTTCTTTGG
5._GC-08-174-4-17
TTCTAAAGAACCACAGAAGTTTCTTTGG
6._GC-04-034-2-16
TTTTAGAGAACCACAGAAGGTTCCTTGG
7._GC-08-175-4-18
TTTTAGAGAACCACAGAAGGTTCCTTGG
8._GC-08-174-4-17
TTTTAGAGAACCACAGAAGGTTCCTTGG
9._GC-04-034-2-16
TTTTAGAGAACCACAGAAGGTTCCTTGG
10._GC-04-034-2-16
TTTTAGAGAACCACAGAAGGTTCCTTGG
11._GC-04-034-2-16
TTTTAGAGAACCACAGAAGGTTCCTTGG
12._GC-04-034-2-16
TTTTAGAGAACCACAGAAGGTTCCTTGG
13._GC-08-174-4-17
TTTTAGAGAACC_AGAAGGTTCCTTGG
14._GC-08-174-4-17
TTTTAGAGAACCACAGAAGGTTCCTTGG
15._TSA_644
_TT________TTCC__
16._TSA_644
_TT________TTCC__
17._TSA_644
_TT________TTCC__
18._TSA_644
_TT________TTCC__
19._TSA_644
_TT________TTCC__
20._TSA_644
_TT________TT___
 5758596061626364656667686970
_Input profile
CCCCCCCCCCGGCCAGGGGTAATTCCAA
1._GC-08-175-4-18
CCCCCCCCCCGGCCAGGGGTAATTCCAA
2._GC-08-175-4-18
CCCCCCCCCCGGCCAGGGGTAATTCCAA
3._GC-08-175-4-18
CCCCCCCCCCGGCCAGGGGTAATTCCAA
4._GC-08-174-4-17
CCCCCCCCCCGGCCAGGGGTAATTCCAA
5._GC-08-174-4-17
CCCCCCCCCCGGCCAGGGGTAATTCCAA
6._GC-04-034-2-16
CCCCTTACCGGGACAGGGGGAGTTCCAA
7._GC-08-175-4-18
CCCCTTACCGGGACAGGGGGAGTTCCAA
8._GC-08-174-4-17
CCCCTTACCGGGACAGGGGGAGTTCCAA
9._GC-04-034-2-16
CCCCTTACCGGGACAGGGGGAGTTCCAA
10._GC-04-034-2-16
CCCCTTACCGGGACAGGGGGAGTTCCAA
11._GC-04-034-2-16
CCCCTTACCGGGACAGGGGGAGTTCCAA
12._GC-04-034-2-16
CCCCTTACCGGGACAGGGGGAGTTCCAA
13._GC-08-174-4-17
CCCCTTACCGGGACAGGGGGAGTTCCAA
14._GC-08-174-4-17
CCCCTTACCGGGACAGGGGGAGTTCCAA
15._TSA_644
CC_TTACCG_ACAGGGGG___AA
16._TSA_644
CC_TTACCG_ACAGGGGG___AA
17._TSA_644
CC_TTACCG_ACAGGGGG___AA
18._TSA_644
CC_TTACCG_ACAGGGGG___AA
19._TSA_644
CC_TTACCG_ACAGGGGG___AA
20._TSA_644
CC_TTACCG_ACAG_GG___AG
 7172737475767778798081828384
_Input profile
CTACAGCCACAAACCGCCAACCTTCTCT
1._GC-08-175-4-18
CTACAGCCACAAACCGCCAACCTTCTCT
2._GC-08-175-4-18
CTACAGCCACAAACCGCCAACCTTCTCT
3._GC-08-175-4-18
CTACAGCCACAAACCGCCAACCTTCTCT
4._GC-08-174-4-17
CTACAGCCACAAACCGCCAACCTTCTCT
5._GC-08-174-4-17
CTACAGCCACAAACCGCCAACCTTCTCT
6._GC-04-034-2-16
CCCCAGCCCCAAACCCCCAACCCTCTCC
7._GC-08-175-4-18
CCCCAGCCCCAAACCCCCAACCCTCTCC
8._GC-08-174-4-17
CCCCAGCCCCAAACCCCCAACCCTCTCC
9._GC-04-034-2-16
CCCCAGCCCCAAACCCCCAACCCTCTCC
10._GC-04-034-2-16
CCCCAGCCCCAAACCCCCAACCCTCTCC
11._GC-04-034-2-16
CCCCAGCCCCAAACCCCCAACCCTCTCC
12._GC-04-034-2-16
CCCCAGCCCCAAACCCCCAACCCTCTCC
13._GC-08-174-4-17
CCCCAGCCCCAAACCCCCAACCCTCTCC
14._GC-08-174-4-17
CCCCAGCCCCAAACCCCCAACCCTCTCC
15._TSA_644
CC_____ACCC___CTCTCC
16._TSA_644
CC_____ACCC___CTCTCC
17._TSA_644
CC_____ACCC___CTCTCC
18._TSA_644
CC_____ACCC___CTCTCC
19._TSA_644
CC_____ACCC___CTCTCC
20._TSA_644
CC_____ACCC___CTCT_
 8586878889909192      
_Input profile
CTAGCCCCGTCCATAGX_XX_XX_XX_XX_XX_X
1._GC-08-175-4-18
CTAGCCCCGTCCATAGX_XX_XX_XX_XX_XX_X
2._GC-08-175-4-18
CTAGCCCCGTCCATAGX_XX_XX_XX_XX_XX_X
3._GC-08-175-4-18
CTAGCCCCGTCCATAGX_XX_XX_XX_XX_XX_X
4._GC-08-174-4-17
CTAGCCCCGTCCATAGX_XX_XX_XX_XX_XX_X
5._GC-08-174-4-17
CTAGCCCCGTCCATAGX_XX_XX_XX_XX_XX_X
6._GC-04-034-2-16
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
7._GC-08-175-4-18
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
8._GC-08-174-4-17
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
9._GC-04-034-2-16
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
10._GC-04-034-2-16
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
11._GC-04-034-2-16
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
12._GC-04-034-2-16
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
13._GC-08-174-4-17
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
14._GC-08-174-4-17
CTAGCCTTGTCTTTAGX_XX_XX_XX_XX_XX_X
15._TSA_644
_AG_TTGTCT__X_XX_XX_XX_XX_XX_X
16._TSA_644
_AG_TTGTCT__X_XX_XX_XX_XX_XX_X
17._TSA_644
_AG_TTGTCT__X_XX_XX_XX_XX_XX_X
18._TSA_644
_AG_TTGTCT__X_XX_XX_XX_XX_XX_X
19._TSA_644
_AG_TTGTCT__X_XX_XX_XX_XX_XX_X
20._TSA_644
___TTGTCT__X_XX_XX_XX_XX_XX_X

Input profile: TSA_644 GC-08-175-4-18

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._TSA_644 GC-08-175-4-18

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

2._TSA_644 GC-08-175-4-18

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._TSA_644 GC-08-175-4-18

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._TSA_644 GC-08-174-4-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._TSA_644 GC-08-174-4-17

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._TSA_644 GC-04-034-2-16

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP3
 Mars, 2018

7._TSA_644 GC-08-175-4-18

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._TSA_644 GC-08-174-4-17

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._TSA_644 GC-04-034-2-16

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._TSA_644 GC-04-034-2-16

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

11._TSA_644 GC-04-034-2-16

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._TSA_644 GC-04-034-2-16

77.7 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

13._TSA_644 GC-08-174-4-17

77.5 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

14._TSA_644 GC-08-174-4-17

77.2 %
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

15._TSA_644

72.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 7 > FP
 Dapeng Zhang, 2016

16._TSA_644

72.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 4 > FP
 Dapeng Zhang, 2016

17._TSA_644

72.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 3 > FP
 Dapeng Zhang, 2016

18._TSA_644

72.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 2 > FP
 Dapeng Zhang, 2016

19._TSA_644

72.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4216 6
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._TSA_644

67.7 %
31 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: La Montaña Lot 8, Row 1 13_15
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1350 2TcSNP534 3TcSNP42 4TcSNP418 5TcSNP702
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP860
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240